ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl39f02 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 65.1 bits (157), Expect = 4e-11 Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 9/84 (10%) Frame = +3 Query: 168 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPKLARRGGV---------DEPFAW 320 RG VK V SG +++ G + PPE+ I LS + A LARR V DEP+A+ Sbjct: 21 RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80 Query: 321 ESREFLRKLCVGKEVTFRVDYTAP 392 +REFLRK +GKEV F ++ P Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTP 104 Score = 40.4 bits (93), Expect = 0.001 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Frame = +3 Query: 174 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPKLARRGGVDE----------PFAWE 323 KV V + D +++ K K+I LS + P+L D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 324 SREFLRKLCVGKEVTFRVDYTAP 392 +REFLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 64.7 bits (156), Expect = 5e-11 Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 15/103 (14%) Frame = +3 Query: 129 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPKLAR 290 A A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LAR Sbjct: 2 ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61 Query: 291 RGGV---------DEPFAWESREFLRKLCVGKEVTFRVDYTAP 392 R DEP+A+ +REFLRK +GKEV F ++ P Sbjct: 62 RAAATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTP 104 Score = 39.7 bits (91), Expect = 0.002 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Frame = +3 Query: 174 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPKLAR----------RGGVDEPFAWE 323 KV V + D +++ K K+I LS + P+L R D P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 401 Query: 324 SREFLRKLCVGKEVTFRVDYTAP 392 +REFLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 64.3 bits (155), Expect = 7e-11 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 9/96 (9%) Frame = +3 Query: 132 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPKLARRG----- 296 + +S A RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 9 VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68 Query: 297 ----GVDEPFAWESREFLRKLCVGKEVTFRVDYTAP 392 DEP+A+++REF+RK +GKEV F V+ P Sbjct: 69 DTKDTPDEPWAFQAREFMRKKVIGKEVCFTVENKTP 104 Score = 37.7 bits (86), Expect = 0.007 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 11/81 (13%) Frame = +3 Query: 174 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPKLAR-----------RGGVDEPFAW 320 KV V + D +++ K K+I LS + P+L R D P+ + Sbjct: 347 KVMQVVNADAIVV----KLNSGEYKTIHLSSIRPPRLEGEEKNKDKDKRFRPLYDIPYMF 402 Query: 321 ESREFLRKLCVGKEVTFRVDY 383 E+REFLRK +GK+V VDY Sbjct: 403 EAREFLRKKLIGKKVNVTVDY 423
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 64.3 bits (155), Expect = 7e-11 Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 15/100 (15%) Frame = +3 Query: 138 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPKLARRGG 299 A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 4 AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63 Query: 300 V---------DEPFAWESREFLRKLCVGKEVTFRVDYTAP 392 DEP+A+ +REFLRK +GKEV F ++ P Sbjct: 64 ATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTP 103 Score = 40.0 bits (92), Expect = 0.001 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 10/83 (12%) Frame = +3 Query: 174 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPKLAR----------RGGVDEPFAWE 323 KV V + D +++ K K+I LS + P+L R D P+ +E Sbjct: 345 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 400 Query: 324 SREFLRKLCVGKEVTFRVDYTAP 392 +REFLRK +GK+V+ VDY P Sbjct: 401 AREFLRKKLIGKKVSVTVDYIRP 423
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 63.2 bits (152), Expect = 1e-10 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 9/84 (10%) Frame = +3 Query: 168 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPKLARRGGV---------DEPFAW 320 RG +K V SG +++ G + PPE+ I LS + A LARR DEP+A+ Sbjct: 21 RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80 Query: 321 ESREFLRKLCVGKEVTFRVDYTAP 392 +REFLRK +GKEV F ++ P Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTP 104 Score = 40.4 bits (93), Expect = 0.001 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Frame = +3 Query: 174 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPKLARRGGVDE----------PFAWE 323 KV V + D +++ K K+I LS + P+L D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 324 SREFLRKLCVGKEVTFRVDYTAP 392 +REFLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 29.3 bits (64), Expect = 2.4 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 2/111 (1%) Frame = -1 Query: 343 FLRNSLLSQANGSSTPPRRA-SFGAIRYDRVMDFSGGISALVLPMMRRQSPEVTAFTLPL 167 FL +SLLS A + PP S R R S S+ + P RR T F L Sbjct: 318 FLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLE 377 Query: 166 SH-PEAPVFDAMIAPWDWPAASGLRLPIRDPGEGVWPAG*SLLSRPDPDPN 17 P+ P AP P LP +P + + P+ SLL P P P+ Sbjct: 378 GRGPQTPRRSRPRAPA--PVPQPFSLP--EPSQPILPSVLSLLGLPTPGPS 424
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +3 Query: 108 AAG--QSQGAIMASNTGASGWLRGKVKAVTSGDCLLIMGS 221 AAG +S+GA + G RG K+ T+GDC GS Sbjct: 66 AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105
>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +3 Query: 105 LAAGQSQGAIMASNTGASGWLRGKVKAV----TSGDCLLIMGSTKAEIPPEKSITLSYLM 272 + AG S+ ++A +TG + W+ + A TS +LI S + EK++ Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291 Query: 273 APKLA 287 P+ A Sbjct: 292 LPRTA 296
>MRT4_NEUCR (Q7S302) mRNA turnover protein 4 homolog| Length = 252 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +3 Query: 219 STKAEIPPEKSITLSYLMAPKLARRGGVDEPFAWESREFLRKLCVGKEVTFRVDY 383 ST E+P E + +S+ + P+L R G +R K+C+G E DY Sbjct: 144 STGGEVPAEHDVPVSHTLEPELRRLG-------MPTRMVKGKVCLGDEAGEGDDY 191
>UNG_PSEPK (Q88N05) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 230 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +3 Query: 279 KLARRGGVDEPFAWESREFLR-KLCVGKEV 365 K A RG D+P+ + REFLR + GKE+ Sbjct: 14 KAALRGEFDQPYMHQLREFLRGEYAAGKEI 43
>CRTE_RHOCA (P17060) Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)| (GGPP synthetase) (Farnesyltranstransferase) Length = 289 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +3 Query: 183 AVTSGDCLLIMG----STKAEIPPEKSITLSYLMAPKLARRGGVDEPFAWES 326 AV +GD LLI G + + P++++ L + RGG+ AWES Sbjct: 106 AVLAGDSLLIRGFEVLADVGAVNPDRALKLISKLGQLSGARGGICAGQAWES 157
>CAR10_HUMAN (Q9BWT7) Caspase recruitment domain-containing protein 10| (CARD-containing MAGUK protein 3) (Carma 3) Length = 1032 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/66 (24%), Positives = 26/66 (39%) Frame = +3 Query: 6 FPPSFGSGSGRERRDQPAGQTXXXXXXXXXXXXLAAGQSQGAIMASNTGASGWLRGKVKA 185 FPPS GS R+R + PA + + +S++ S W GK + Sbjct: 524 FPPSAGSILRRQREEDPAPPKRSFSSMSDITGSVTLKPWSPGLSSSSSSDSVWPLGKPEG 583 Query: 186 VTSGDC 203 + + C Sbjct: 584 LLARGC 589
>YBBP_ECOLI (P77504) Hypothetical protein ybbP| Length = 804 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/57 (31%), Positives = 25/57 (43%) Frame = +3 Query: 201 CLLIMGSTKAEIPPEKSITLSYLMAPKLARRGGVDEPFAWESREFLRKLCVGKEVTF 371 C+L +G+ + S MA A R + P AW R L VGK++TF Sbjct: 28 CVLALGNISDRMEKGLSQQSREFMAGDRALRSSREVPQAWLEEAQKRGLKVGKQLTF 84
>COBQ_MYCTU (P0A532) Cobyric acid synthase| Length = 494 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = +2 Query: 146 HRSFRMAKGQGEGCDFWGLPSHHGEHQGRDPAREVHHSVIPYGPKAGSSW 295 H+ R+ +G+G G G HHG D A E GP G+ W Sbjct: 375 HKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGARD-GPVFGTMW 423
>COBQ_MYCBO (P0A533) Cobyric acid synthase| Length = 494 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = +2 Query: 146 HRSFRMAKGQGEGCDFWGLPSHHGEHQGRDPAREVHHSVIPYGPKAGSSW 295 H+ R+ +G+G G G HHG D A E GP G+ W Sbjct: 375 HKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGARD-GPVFGTMW 423
>MYCB2_MOUSE (Q7TPH6) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc| binding protein 2) (Protein associated with Myc) (Pam/highwire/rpm-1 protein) Length = 4711 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -1 Query: 106 SGLRLPIRDPGEGVWPAG*SLLS-RPDPDPN 17 +GL + ++DP +G+ P G L+ + DP PN Sbjct: 2393 AGLEVKVKDPPKGMIPPGTQLVKPKADPQPN 2423
>PFA5_YARLI (Q6C7D1) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Protein fatty| acyltransferase 5) Length = 334 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +2 Query: 185 CDFWGLPSHHGEHQGRDPAREVHHSVI 265 CD WG+P E Q P R HHS I Sbjct: 113 CDGWGMPKWCSECQTHKPDR-THHSAI 138 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,169,462 Number of Sequences: 219361 Number of extensions: 1218434 Number of successful extensions: 3237 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3166 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3232 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
