>GBRT_MOUSE (Q9JLF1) Gamma-aminobutyric-acid receptor theta subunit precursor|
           (GABA(A) receptor)
          Length = 638

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 21/69 (30%), Positives = 26/69 (37%)
 Frame = +3

Query: 207 SRRSLGSTAPPSAAARLVTMASDQHPLDSFXXXXXXXXXXXXXPGSDSKQQEQQRQPDCL 386
           S+ SLGS    S  A+L T  S    L                  SD     +Q  P+C 
Sbjct: 413 SQESLGSLVFTSEQAQLATSES----LSLLSSASSQTQLATGESLSDLPSTSEQTVPECT 468

Query: 387 LHLHVVLTN 413
           +H H  LTN
Sbjct: 469 IHFHGFLTN 477

>LORI_HUMAN (P23490) Loricrin|
          Length = 316

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 254 AGGSTRWRGGSQRAAGKAACWSTGGG 177
           +GGS ++ GG   + G + C+S+GGG
Sbjct: 84  SGGSVKYSGGGGSSGGGSGCFSSGGG 109

>HNF3G_BOVIN (Q3Y598) Hepatocyte nuclear factor 3-gamma (HNF-3G) (Forkhead box|
           protein A3)
          Length = 351

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = +3

Query: 135 GRGPPFVHLRGREMPASG*PTCGLSRRSLGSTAPPSAAARLVTMASDQHP 284
           G GP  VH  G+EMP          RR L    PP +   L+TMA  Q P
Sbjct: 95  GPGPGLVH--GKEMPKG-------YRRPLAHAKPPYSYISLITMAIQQAP 135

>Y4FR_RHISN (P55456) Hypothetical 60.5 kDa protein y4fR|
          Length = 546

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 274 SDAIVTRRAAALGGAVDPSERRERPHVGQPEAGISRPRRWTNGG 143
           ++A  +  +++ G  V      ERP  G+P+  +SR R W   G
Sbjct: 38  TEAEASAASSSQGQIVAAPTAEERPWEGRPQEAVSRTRAWREAG 81

>MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein) (86 kDa|
           protein)
          Length = 537

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 142 DRHSSTSAGERCPPPVDQHAAFPAARWDP-PRH 237
           + H+     E  PPP ++HA  PAA   P P H
Sbjct: 50  EEHAPPPKEEHAPPPKEEHAPAPAAETPPAPEH 82

>HNF3G_HUMAN (P55318) Hepatocyte nuclear factor 3-gamma (HNF-3G) (Forkhead box|
           protein A3) (Fork head-related protein FKH H3)
          Length = 350

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = +3

Query: 96  LGPFISSAAARRKGRGPPFVHLRGREMPASG*PTCGLSRRSLGSTAPPSAAARLVTMASD 275
           LG    S+++     GP  VH  G+EMP          RR L    PP +   L+TMA  
Sbjct: 81  LGVSGGSSSSGYGAPGPGLVH--GKEMPKG-------YRRPLAHAKPPYSYISLITMAIQ 131

Query: 276 QHP 284
           Q P
Sbjct: 132 QAP 134

>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)|
          Length = 3164

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +1

Query: 118  PPLDGREGDRHSSTSAGERCPPPVDQHAAFPAARWDPPRHLVL 246
            P L     +  SS+ AG   PPP  Q  A P     PP +L L
Sbjct: 2828 PVLGRNPAEPTSSSPAGPSPPPPAVQPVAPPPTSGPPPTYLTL 2870

>NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
            (N-methyl D-aspartate receptor subtype 2C) (NR2C)
            (NMDAR2C)
          Length = 1237

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 172  RCPPPVDQHAAFPAARWDPPRHLV 243
            R PPP   H+ +    W+PP H V
Sbjct: 1170 RHPPPCTSHSPWLIGTWEPPAHRV 1193

>BRMS1_MOUSE (Q99N20) Breast cancer metastasis-suppressor 1 homolog|
          Length = 246

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 277 WSDAIVTRRAAALGGAVDPSERRERPHVGQP 185
           W D + +R ++  G A+ PS+R++ P V  P
Sbjct: 181 WDDKLHSRSSSKAGDAMPPSKRKKAPLVSGP 211


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,174,168
Number of Sequences: 219361
Number of extensions: 721285
Number of successful extensions: 2510
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2507
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)