ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl39e11 |
|---|---|
| Clone Library Name | barley_pub |
>IF38_ARATH (O49160) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) (p105) Length = 900 Score = 101 bits (252), Expect = 7e-22 Identities = 48/85 (56%), Positives = 61/85 (71%) Frame = +3 Query: 174 EAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 353 E + D NRYL DD DT++ RV++ KDKR +EM T DQM+NAMKINDW+S Sbjct: 22 EVNEVQNDDVNNRYLQSGSEDDDDTDTKRVVKPAKDKRFEEMTYTVDQMKNAMKINDWVS 81 Query: 354 LQESFDKLNKQLEKVVRVNESTKIP 428 LQE+FDK+NKQLEKV+R+ E+ K P Sbjct: 82 LQENFDKVNKQLEKVMRITEAVKPP 106
>IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) Length = 935 Score = 99.8 bits (247), Expect = 3e-21 Identities = 53/93 (56%), Positives = 69/93 (74%), Gaps = 3/93 (3%) Frame = +3 Query: 159 DSEKSEAGDGGRDVS-KNRYLHREDSDDSDTES--HRVIRSLKDKRNDEMKATADQMRNA 329 D E S+ D + K++YL ++DDSD + RV++S KDKR DEM +T DQ++NA Sbjct: 23 DDEPSDTEPAPTDPNGKSKYLAGGNADDSDDDDGQKRVVKSAKDKRFDEMASTVDQIKNA 82 Query: 330 MKINDWLSLQESFDKLNKQLEKVVRVNESTKIP 428 +KINDW+SLQESFDK+NKQLEKV+RV ES KIP Sbjct: 83 IKINDWVSLQESFDKINKQLEKVMRVIESQKIP 115
>IF38_SCHPO (O14164) Probable eukaryotic translation initiation factor 3 93 kDa| subunit (eIF3 p93) Length = 918 Score = 52.8 bits (125), Expect = 4e-07 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Frame = +3 Query: 165 EKSEAGDGGRDVSKNRYLHREDSDDS--DTESHRVIRSLKDKRNDEMKATADQMRNAMKI 338 EK EA G ++L E S++S + E RV++S KDKR +E + + ++NAM Sbjct: 142 EKEEAKPAGL-----KFLRGESSEESSDEEEGRRVVKSAKDKRYEEFISCMETIKNAMSS 196 Query: 339 NDWLSLQESFDKLNKQLEK 395 N+W+ + FD LNK +K Sbjct: 197 NNWIVVSNEFDHLNKVSQK 215
>IF38_HUMAN (Q99613) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) Length = 913 Score = 45.8 bits (107), Expect = 5e-05 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 6/96 (6%) Frame = +3 Query: 159 DSEKSEAGDG------GRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQM 320 +SE S +G+ G + K L ED +D+ RV+RS KDKR +E+ + Sbjct: 12 ESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTK----RVVRSAKDKRFEELTNLIRTI 67 Query: 321 RNAMKINDWLSLQESFDKLNKQLEKVVRVNESTKIP 428 RNAMKI D E F+ L K K + + +P Sbjct: 68 RNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVP 103
>IF38_YEAST (P32497) Eukaryotic translation initiation factor 3 93 kDa subunit| (eIF3 p93) (Nuclear transport protein NIP1) Length = 812 Score = 45.1 bits (105), Expect = 8e-05 Identities = 22/86 (25%), Positives = 43/86 (50%) Frame = +3 Query: 162 SEKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKIN 341 SE + G G K+ D + + + +V++S K+K DEM+ +++ A + Sbjct: 78 SEFRKQGGGSNKFLKSSNYDSSDEESDEEDGKKVVKSAKEKLLDEMQDVYNKISQAENSD 137 Query: 342 DWLSLQESFDKLNKQLEKVVRVNEST 419 DWL++ FD +++ L + + N T Sbjct: 138 DWLTISNEFDLISRLLVRAQQQNWGT 163
>IF38_CAEEL (O02328) Probable eukaryotic translation initiation factor 3| subunit 8 (eIF3 p110) (eIF3c) Length = 898 Score = 40.0 bits (92), Expect = 0.003 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Frame = +3 Query: 159 DSEKSEAGDGGRDVSKNRYLHREDSDD----SDTESHRVIRSLKDKRNDEMKATADQMRN 326 DS+ S + D D N+ D D + + RV+R+ KDK+ DE+K Q R+ Sbjct: 12 DSDTSSSEDEVEDQKVNKSAKFRDDLDFMAGPEEDEKRVVRAQKDKKFDELKGIIKQNRD 71 Query: 327 AMKINDWLSLQESFDKLNKQLEK 395 A D L FD L K +K Sbjct: 72 AKSNKDLNRLLTGFDSLAKAYDK 94
>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3| Length = 981 Score = 32.0 bits (71), Expect = 0.70 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%) Frame = -2 Query: 186 HHQLLIFHYRSLVL-----TQSRPPPPQSHCLPVPKN 91 HHQLL+ + + + S+ PPP HC+P+P + Sbjct: 319 HHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNH 355
>DPO3A_LACLA (Q9CI70) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1060 Score = 31.6 bits (70), Expect = 0.91 Identities = 18/72 (25%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Frame = +3 Query: 195 DVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKIND--WLSLQESF 368 DV+ ++R+ S + + +I +RNDE++ D++ A++ + WL+L++ Sbjct: 946 DVTLFPEIYRQFSGELEQGKFYLISGKVTERNDELQLVTDRISPALETDRKLWLNLRD-- 1003 Query: 369 DKLNKQLEKVVR 404 DK N+++ +++R Sbjct: 1004 DKYNQKISQILR 1015
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 31.2 bits (69), Expect = 1.2 Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 11/81 (13%) Frame = -2 Query: 297 SHHCACPSTSESHDGSQYQSRHCP----------LYANSGSWTHHD-PHHQLLIFHYRSL 151 SH + PST+ + D Q H P SG W P +F L Sbjct: 8 SHRLSLPSTTTTRDHHHQQHHHHPPPPPSRTHFTTITTSGRWLQRQFPVLTTTVFFSLFL 67 Query: 150 VLTQSRPPPPQSHCLPVPKNE 88 P PPQ H P P + Sbjct: 68 SFPPHPPRPPQDHHRPTPARD 88
>GSBN_DROME (P09083) Protein gooseberry-neuro (Protein gooseberry proximal)| (BSH4) Length = 449 Score = 31.2 bits (69), Expect = 1.2 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +3 Query: 183 DGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQM 320 DG +D + N L DSD SDTES I + +R TA+Q+ Sbjct: 149 DGRKDYTINGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQL 194
>ZN37A_HUMAN (P17032) Zinc finger protein 37A (Zinc finger protein KOX21)| Length = 561 Score = 30.8 bits (68), Expect = 1.6 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Frame = -2 Query: 204 WTHHDPHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP-------KNEMPWLLFVCFPS 55 W H DP + L YR ++L +C+P P K E PW+L FPS Sbjct: 22 WQHLDPAQRTL---YRDVMLENYSHLVSVGYCIPKPEVILKLEKGEEPWILEEKFPS 75
>TSSC1_PONPY (Q5RE10) Protein TSSC1| Length = 414 Score = 30.4 bits (67), Expect = 2.0 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +3 Query: 198 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 353 +S + H D DD SD E HR K+ D + AT ++ +++ DW S Sbjct: 332 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDWSS 384
>TSSC1_MACFA (Q4R571) Protein TSSC1| Length = 387 Score = 30.4 bits (67), Expect = 2.0 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +3 Query: 198 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 353 +S + H D DD SD E HR K+ D + AT ++ +++ DW S Sbjct: 305 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDWSS 357
>TSSC1_HUMAN (Q53HC9) Protein TSSC1 (Tumor-suppressing subchromosomal| transferable fragment candidate gene 1 protein) (Tumor-suppressing STF cDNA 1 protein) Length = 387 Score = 30.4 bits (67), Expect = 2.0 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +3 Query: 198 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 353 +S + H D DD SD E HR K+ D + AT ++ +++ DW S Sbjct: 305 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDWSS 357
>IWS1_MOUSE (Q8C1D8) IWS1-like protein| Length = 766 Score = 30.4 bits (67), Expect = 2.0 Identities = 19/68 (27%), Positives = 26/68 (38%) Frame = +3 Query: 159 DSEKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKI 338 DSE E + S++ LHR DSD+E H D N+ + N + Sbjct: 68 DSENDEPSNANASDSESEELHRPKDSDSDSEEH-AESPASDSENEPVNQHGSDSENEELL 126 Query: 339 NDWLSLQE 362 N S E Sbjct: 127 NGHASDSE 134
>AMEL_MONDO (Q28462) Amelogenin| Length = 202 Score = 30.4 bits (67), Expect = 2.0 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 10/52 (19%) Frame = -2 Query: 222 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 97 Y G W HH P H L H+ ++ Q +P PPQ +PVP Sbjct: 39 YEPMGGWLHHQIIPVLSQQHSPSHSLPPQHHIPIMAAQ-QPAPPQQPVMPVP 89
>RIC8A_BRARE (Q642H7) Synembryn-A (Protein Ric-8A)| Length = 548 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Frame = +3 Query: 186 GGRDVSKNRYLHREDSDDSDTESHRV----IRSLKDKRNDEMKATADQMRNAMKINDWLS 353 GGRD H + +DSDTE +R I + + +E + M + K + + Sbjct: 440 GGRDPG-----HYSEDEDSDTEEYREAKPHINPVTGRVEEEQPNPMEGMTDEQKEYEAMK 494 Query: 354 LQESFDKLNKQ 386 L FDKL+++ Sbjct: 495 LVNMFDKLSRE 505
>PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog of| polyhomeotic 3) (Early development regulatory protein 3) Length = 983 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = -2 Query: 300 SSHHCACPST-SESHDGSQYQSRHCPLYANSGSWTHHDPHHQLLIFHYRSLVLTQS-RPP 127 S H P++ S S + + PL++ +HH Q + + L S + P Sbjct: 287 SIHQLIAPASYSPIQPHSLIKHQQIPLHSPPSKVSHHQLILQQQQQQIQPITLQNSTQDP 346 Query: 126 PPQSHCLPVPKNEMP 82 PP HC+P+ + +P Sbjct: 347 PPSQHCIPLQNHGLP 361
>RAD50_RAT (Q9JIL8) DNA repair protein RAD50 (EC 3.6.-.-)| Length = 1312 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/56 (21%), Positives = 30/56 (53%) Frame = +3 Query: 246 TESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLSLQESFDKLNKQLEKVVRVNE 413 T+ IR +K + +DE+ + N ++ DWL + ++N+ +++ ++N+ Sbjct: 546 TDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSK--EINQTRDRLAKLNK 599
>RAD50_MOUSE (P70388) DNA repair protein RAD50 (EC 3.6.-.-) (mRad50)| Length = 1312 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/56 (21%), Positives = 30/56 (53%) Frame = +3 Query: 246 TESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLSLQESFDKLNKQLEKVVRVNE 413 T+ IR +K + +DE+ + N ++ DWL + ++N+ +++ ++N+ Sbjct: 546 TDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSK--EINQTRDRLAKLNK 599
>YGZ2_YEAST (P53066) Hypothetical ANK repeat-containing protein YGL242C| Length = 181 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/51 (27%), Positives = 29/51 (56%) Frame = +3 Query: 288 NDEMKATADQMRNAMKINDWLSLQESFDKLNKQLEKVVRVNESTKIPIGTS 440 N E + ++Q+ +A + N+ L+ FD L+ EK+ ++ +K P+G + Sbjct: 2 NTEGASLSEQLLDAARRNNLDLLETVFDSLDNDPEKIAKLINESKEPLGNT 52
>RAD50_HUMAN (Q92878) DNA repair protein RAD50 (EC 3.6.-.-) (hRAD50)| Length = 1312 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/63 (22%), Positives = 33/63 (52%) Frame = +3 Query: 225 EDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLSLQESFDKLNKQLEKVVR 404 +D D D + IR +K + +DE+ + N ++ DWL + ++N+ +++ + Sbjct: 543 KDKADKDEQ----IRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSK--EINQTRDRLAK 596 Query: 405 VNE 413 +N+ Sbjct: 597 LNK 599
>ERF1_DILMA (Q5CD96) Eukaryotic peptide chain release factor subunit 1 (eRF1)| (Eukaryotic release factor 1) Length = 436 Score = 29.3 bits (64), Expect = 4.5 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Frame = +3 Query: 165 EKSEAGDGGRDVSKNRY---LHREDS-DDSDTESHRVIRSLKDKRNDEMKATADQMRNAM 332 +K E + R V R +H+ D+ S T +I + KD+ N MK D++ A Sbjct: 3 DKDEDAEYERSVEMFRLKKLIHKLDNLKGSGTSMISLIINYKDQINPFMKMLVDEVGKAS 62 Query: 333 KINDWLSLQESFDKLNKQLEKVVRVNES 416 I ++ Q D L +EK+ N++ Sbjct: 63 NIKSRVTRQNVTDALTSTMEKLKLYNKT 90
>STP2_CANFA (O77645) Nuclear transition protein 2 (TP-2) (TP2)| Length = 129 Score = 29.3 bits (64), Expect = 4.5 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = -2 Query: 300 SSHHCACP-STSESHDGSQYQSRHCPLYANSGSWTHHDPHHQLLIFHYRSLVLTQSRPPP 124 SSH C S S+S SQ + H +++SG + PH L H + + PP Sbjct: 32 SSHCQTCSQSCSQSRSSSQSPTGH---HSSSGHQSQ-SPHPTLPPRHQKHTRHSHHCPPR 87 Query: 123 PQSHCLPVPKN 91 P +H PKN Sbjct: 88 PTTHSCSYPKN 98
>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (EC 3.6.1.-)| (ATP-dependent helicase xnp-1) (X-linked nuclear protein 1) Length = 1359 Score = 29.3 bits (64), Expect = 4.5 Identities = 21/86 (24%), Positives = 35/86 (40%) Frame = +3 Query: 159 DSEKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKI 338 D ++ E+ S+ R +SD+SD E R K K + + K + + R Sbjct: 68 DDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSS 127 Query: 339 NDWLSLQESFDKLNKQLEKVVRVNES 416 D S +E K K+ +K + S Sbjct: 128 EDEDSDEEREQKSKKKSKKTKKQTSS 153
>RPOD_HAEIN (P43766) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 629 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/62 (25%), Positives = 34/62 (54%) Frame = +3 Query: 228 DSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLSLQESFDKLNKQLEKVVRV 407 D DD + S+ + +D+ ++E ++T+D + I+ ++ +E F +L +Q K + V Sbjct: 192 DEDDEEESSNADVEDNEDEEDNESESTSDSSDSDNSIDPEVA-REKFQQLREQHSKTLAV 250 Query: 408 NE 413 E Sbjct: 251 IE 252
>SMC1_YEAST (P32908) Structural maintenance of chromosome 1 (DA-box protein| SMC1) Length = 1225 Score = 29.3 bits (64), Expect = 4.5 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +3 Query: 222 REDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLSLQES-FDKLNKQLEKV 398 +E+ D + + I SLK K N+EMK+ + +K + +S Q+S D + K EK+ Sbjct: 249 KEELTDKLSALNSEISSLKGKINNEMKSLQRSKSSFVKESAVISKQKSKLDYIFKDKEKL 308 Query: 399 VRVNESTKIP 428 V K+P Sbjct: 309 VSDLRLIKVP 318
>ALM1_SCHPO (Q9UTK5) Abnormal long morphology protein 1 (Sp8)| Length = 1727 Score = 29.3 bits (64), Expect = 4.5 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 4/79 (5%) Frame = +3 Query: 219 HREDSDDSDTESHRVIRSLKDKRND---EMKATADQMRNAMKIN-DWLSLQESFDKLNKQ 386 H E +D + V L+ R D E+ AD K+ D+ E + LNK+ Sbjct: 1037 HLEKENDYKQQLLLVTEDLRKTREDYEKELLRHADARSTLQKLREDYTKALEQVEDLNKE 1096 Query: 387 LEKVVRVNESTKIPIGTSQ 443 + +NES PI + Sbjct: 1097 IALKAGINESQPFPISEKE 1115
>CASB_BOVIN (P02666) Beta-casein precursor| Length = 224 Score = 28.9 bits (63), Expect = 5.9 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = -2 Query: 270 SESHDGSQYQSRHCPLYANSGSWTH--HDPHHQLLIFHYRSLV-LTQSRPPPPQSHCLPV 100 S+S + ++ H PL SW H H P ++F +S++ L+QS+ P +P Sbjct: 137 SQSLTLTDVENLHLPLPLLQ-SWMHQPHQPLPPTVMFPPQSVLSLSQSKVLPVPQKAVPY 195 Query: 99 PKNEMPWLLFVCF 61 P+ +MP F+ + Sbjct: 196 PQRDMPIQAFLLY 208
>AMEL_CAVPO (Q9Z0K9) Amelogenin precursor| Length = 226 Score = 28.9 bits (63), Expect = 5.9 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 10/52 (19%) Frame = -2 Query: 222 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 97 Y + G W HH P H L H+ V +P PQ +PVP Sbjct: 69 YESMGGWVHHQVIPVLSQQHPPSHTTLPPHHHIPVGPAQQPVVPQQPLMPVP 120
>Y564_TREPA (O83575) Hypothetical protein TP0564| Length = 678 Score = 28.9 bits (63), Expect = 5.9 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 8/73 (10%) Frame = -2 Query: 297 SHHCACPSTSESHDGSQYQSRHCPL-------YANSGSWTHHDPHHQLLI-FHYRSLVLT 142 +H CP S H P+ + W H DP H L I H ++ + Sbjct: 125 AHRTVCPPWLLQAVYQHLTSHHVPIRYRDFDAILHRLGWLHEDPRHALYIKEHIPAVRME 184 Query: 141 QSRPPPPQSHCLP 103 S PP H LP Sbjct: 185 NSLYPPGALHTLP 197
>INO80_YEAST (P53115) Putative DNA helicase INO80 (EC 3.6.1.-)| (Inositol-requiering protein 80) Length = 1489 Score = 28.9 bits (63), Expect = 5.9 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 6/95 (6%) Frame = +3 Query: 159 DSEKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAM-- 332 + E+ E + D+ + + E+ DD+D E + KR+ ++ N++ Sbjct: 257 NGEEDEEEEEIEDLDEEDFAAFEEQDDNDDEDFNPDVEKRRKRSSSSSSSTKLSMNSLSL 316 Query: 333 ----KINDWLSLQESFDKLNKQLEKVVRVNESTKI 425 KIN +++ K+ ++L K+ N+ KI Sbjct: 317 ITSKKINKNITINSDRPKIVRELIKMCNKNKHQKI 351
>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox| protein NK-1) Length = 659 Score = 28.9 bits (63), Expect = 5.9 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%) Frame = -2 Query: 249 QYQSRHCPLYANSGSWTHHDPH-----HQLLIFHYRSLVLTQSRPPPPQSHCLPVP 97 Q+Q P + +S H PH H +FH R+ + + PP P + L P Sbjct: 206 QHQHHQHPAHPHSHQHPHPHPHPHPHPHPSAVFHLRAPSSSSTAPPSPATSPLSPP 261
>IRBP_HUMAN (P10745) Interphotoreceptor retinoid-binding protein precursor| (IRBP) (Interstitial retinol-binding protein) Length = 1247 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/41 (34%), Positives = 25/41 (60%) Frame = -2 Query: 183 HQLLIFHYRSLVLTQSRPPPPQSHCLPVPKNEMPWLLFVCF 61 H+LL+FH ++ + PPPP + +P P+ E+ +L+ F Sbjct: 697 HRLLVFHSPGELVVEEAPPPPPA--VPSPE-ELTYLIEALF 734
>DBP4_GIBZE (Q4IAS1) ATP-dependent RNA helicase DBP4 (EC 3.6.1.-)| Length = 793 Score = 28.9 bits (63), Expect = 5.9 Identities = 16/59 (27%), Positives = 30/59 (50%) Frame = +3 Query: 228 DSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLSLQESFDKLNKQLEKVVR 404 D DD+D + + + R+D++ A ++ KI D L +E F +K+ EK ++ Sbjct: 557 DGDDNDDDEEDFLSVKRVLRDDDLDDEAGAYKSTAKIIDGLGGEEPFVVDSKRREKALK 615
>RRP3_ASPFU (Q4WJE9) ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)| Length = 472 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Frame = +3 Query: 192 RDVSKNRYLHR---EDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMK 335 RDV K + H SD T SH+ + D + +ATA + R A K Sbjct: 2 RDVKKRKIAHEAPEHGSDTESTSSHKSVAQQDDPLETQDEATATESRPAPK 52
>PARP1_BOVIN (P18493) Poly [ADP-ribose] polymerase 1 (EC 2.4.2.30) (PARP-1)| (ADPRT) (NAD(+) ADP-ribosyltransferase 1) (Poly[ADP-ribose] synthetase 1) Length = 1015 Score = 28.9 bits (63), Expect = 5.9 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%) Frame = +3 Query: 282 KRNDEMKATADQMRN-----AMKINDWLSLQESFDKLNKQLEKVVRVN 410 + DE+KAT +++ A K + +S ++ DKLNK++E+V N Sbjct: 404 QNKDEVKATIEKLGGKLTGTANKASLCISTKKEVDKLNKKMEEVKEAN 451
>IF2A_HALSA (Q9HRT8) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 267 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/52 (25%), Positives = 25/52 (48%) Frame = +3 Query: 243 DTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLSLQESFDKLNKQLEKV 398 D + ++ SLKD + + T + +N K + WL+L D + Q ++ Sbjct: 70 DESAQQIDLSLKDVNDHQHSDTIQEWKNEQKADKWLTLAFGEDMADDQFRRI 121
>IF2_PSEHT (Q3IJ53) Translation initiation factor IF-2| Length = 886 Score = 28.9 bits (63), Expect = 5.9 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Frame = +3 Query: 222 REDSDDSDTESHRVIRSLKDKRNDEMKA--TADQMRNAMKINDWLSLQESFDKLNKQLEK 395 RE D +D + R K K+ K A + RN K+ SLQ F K ++ Sbjct: 246 REAEDVADARDEQGTRRAKKKKKAPAKDKFAASKGRNKGKLKAPTSLQHGFTKPTADVKN 305 Query: 396 VVRVNESTKI 425 VR++E+ + Sbjct: 306 EVRISETITV 315
>YOW5_CAEEL (P30651) Hypothetical protein ZK643.5| Length = 487 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 2/74 (2%) Frame = +3 Query: 159 DSEKSEAGDGGRDVSKNRYLHREDSDDSD--TESHRVIRSLKDKRNDEMKATADQMRNAM 332 D + EAGD + K + E+ DD D + R K R D ++ ++ N Sbjct: 68 DENEDEAGDDELESEKEELDYDEEEDDEDRRERTSRYTSEKKGSRKDSVEGDENKKENGQ 127 Query: 333 KINDWLSLQESFDK 374 + FDK Sbjct: 128 DETKRSGIPSLFDK 141
>TFC3_YEAST (P34111) Transcription factor tau 138 kDa subunit (TFIIIC 138 kDa| subunit) Length = 1160 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 2/82 (2%) Frame = +3 Query: 201 SKNRYLHREDSDDSDTESHRVIR--SLKDKRNDEMKATADQMRNAMKINDWLSLQESFDK 374 S YL D +T +R+ R + K+ TA + D +S+ + FD+ Sbjct: 371 SSEYYLESVDKQKENTGGYRLFRIYDFEGKKKFFRLFTAQNFQKLTNAEDEISVPKGFDE 430 Query: 375 LNKQLEKVVRVNESTKIPIGTS 440 L K + +NE + + + Sbjct: 431 LGKSRTDLKTLNEDNFVALNNT 452
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 5/76 (6%) Frame = -2 Query: 300 SSHHCACPSTSESHDGSQYQSRHCPLYANSG-----SWTHHDPHHQLLIFHYRSLVLTQS 136 SS S S S D ++ P G HH HHQ + + Q Sbjct: 699 SSSESESSSESSSSDSEDSETEMAPKSKKKGHPGREQKKHHHHHHQQM--QQAPAPVPQQ 756 Query: 135 RPPPPQSHCLPVPKNE 88 PPPPQ P P + Sbjct: 757 PPPPPQQPPPPPPPQQ 772
>IF2_IDILO (Q5QTY8) Translation initiation factor IF-2| Length = 896 Score = 28.5 bits (62), Expect = 7.7 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = +3 Query: 225 EDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMK-INDWLSLQESFDKLNKQLEKVV 401 ED+ D D E R K +R DE + K SLQ+ F+K + +E+ V Sbjct: 258 EDAQDFDEERKSRKRGKKRRRKDEESDDTPRREKRRKGARRGSSLQQGFNKPAQPVERDV 317 Query: 402 RVNESTKI 425 ++ E+ + Sbjct: 318 KIGETITV 325
>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 480 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/45 (35%), Positives = 18/45 (40%) Frame = -2 Query: 216 NSGSWTHHDPHHQLLIFHYRSLVLTQSRPPPPQSHCLPVPKNEMP 82 NS HH HH H+ Q PPPPQ P P + P Sbjct: 41 NSHHPQHHHHHHH---HHHPPPPAPQPPPPPPQQQQQPPPAPQPP 82
>SSRP_MYCLE (O32881) SsrA-binding protein| Length = 160 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Frame = -2 Query: 243 QSRHCPLYANSGSWTHHDP-HHQLLIFHYRSL 151 ++ H P Y + GSWT+HDP ++ L+ H R + Sbjct: 64 RNMHIPEYQH-GSWTNHDPRRNRKLLLHRRQI 94
>GAT1_YEAST (P43574) Transcriptional regulatory protein GAT1| Length = 510 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Frame = +3 Query: 225 EDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWL--SLQESFD 371 +D DD D E+H ++ S D ND A+ NA ++L S SFD Sbjct: 152 DDDDDDDVETHSIVHS--DLLNDMDSASQRASHNASGFPNFLDTSCSSSFD 200 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,249,900 Number of Sequences: 219361 Number of extensions: 866857 Number of successful extensions: 4180 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 3765 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4155 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
