>MK04_RAT (Q63454) Mitogen-activated protein kinase 4 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 4) (ERK-4) (MAP
           kinase isoform p63) (p63-MAPK) (MNK2) (Fragment)
          Length = 274

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 276 YGPAHSFDAAGTALDSAPSCRPWERGDLLRRLATFKPSTWDAK 404
           +  AH  +     LD+ P  R  ++ +LLR + +F  STW+ K
Sbjct: 203 FAGAHELEQMQLILDTIPVVREEDKEELLRVMPSFVSSTWEVK 245

>MK04_MOUSE (Q6P5G0) Mitogen-activated protein kinase 4 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 4) (ERK-4)
          Length = 583

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 276 YGPAHSFDAAGTALDSAPSCRPWERGDLLRRLATFKPSTWDAK 404
           +  AH  +     LD+ P  R  ++ +LLR + +F  STW+ K
Sbjct: 229 FAGAHELEQMQLILDTIPVVREEDKEELLRVMPSFVSSTWEVK 271

>RFA1_PONPY (Q5R7Q4) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (p70)
          Length = 616

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +3

Query: 165 FAGASSPAMQINIVSIDWLGNRQASRVDSSSHVA----PHAYGPAHSFDAAGTALD 320
           F G+  P + I    +   G R  S + SS+ +A    P AY     FDA G ALD
Sbjct: 368 FDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALD 423

>RFA1_HUMAN (P27694) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (Single-stranded
           DNA-binding protein) (p70)
          Length = 616

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +3

Query: 165 FAGASSPAMQINIVSIDWLGNRQASRVDSSSHVA----PHAYGPAHSFDAAGTALD 320
           F G+  P + I    +   G R  S + SS+ +A    P AY     FDA G ALD
Sbjct: 368 FDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALD 423

>MK04_HUMAN (P31152) Mitogen-activated protein kinase 4 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 4) (ERK-4) (MAP
           kinase isoform p63) (p63-MAPK)
          Length = 557

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 276 YGPAHSFDAAGTALDSAPSCRPWERGDLLRRLATFKPSTWDAK 404
           +  AH  +     L++ P  R  ++ +LLR + +F  STW+ K
Sbjct: 229 FAGAHELEQMQLILETIPVIREEDKDELLRVMPSFVSSTWEVK 271

>BASP_MOUSE (Q91XV3) Brain acid soluble protein 1 (BASP1 protein) (Neuronal|
           axonal membrane protein NAP-22) (22 kDa neuronal
           tissue-enriched acidic protein)
          Length = 225

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 33/139 (23%), Positives = 45/139 (32%)
 Frame = +3

Query: 27  EGGARGATASERGEMREEVRSSSGAAAEPQXXXXXXXXXXXXXXXXFAGASSPAMQINIV 206
           E  A  A A++    + E   S GAA E                    G +  A + +  
Sbjct: 70  EKEADKAAAAKEEAPKAEPEKSEGAAEEQPEPAPAPEQEAAAPGPAAGGEAPKAGEASAE 129

Query: 207 SIDWLGNRQASRVDSSSHVAPHAYGPAHSFDAAGTALDSAPSCRPWERGDLLRRLATFKP 386
           S            ++    AP A GP    DAA  A DS PS             A+  P
Sbjct: 130 STGAADGAAPEEGEAKKTEAPAAAGPEAKSDAAPAASDSKPSSAEPAPSSKETPAASEAP 189

Query: 387 STWDAKPKAASSLACSQEA 443
           S+    P  A+  A   +A
Sbjct: 190 SSAAKAPAPAAPAAAEPQA 208

>APPA_BACSU (P42061) Oligopeptide-binding protein appA precursor|
          Length = 543

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = -3

Query: 333 KMVQNPKQFQQHQSYEQAHRHVVQRVMRNQPWKPVCYPAN 214
           K++++ K     + Y + +  + Q++  +QP+  + YP N
Sbjct: 475 KLMKDAKSISDRKQYSKEYEQIYQKIAEDQPYTFLYYPNN 514


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,737,314
Number of Sequences: 219361
Number of extensions: 740409
Number of successful extensions: 2401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2396
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)