ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl39e06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L08, full insert sequence Length = 3325 Score = 216 bits (109), Expect = 5e-53 Identities = 220/257 (85%) Strand = Plus / Plus Query: 175 cctcatcacctgctatgcaaattaatatagtaagcatagattggctgggtaacagacagg 234 |||| ||||||||||||||| |||| | | |||||||||||| ||||| |||||| | Sbjct: 159 cctcgtcacctgctatgcaagctaatgttgccagcatagattggtcgggtagcagacaag 218 Query: 235 cttccagggttgattcctcatcacacgttgcaccacatgcctatgggcctgctcatagct 294 ||||||| ||||||||||||||||| ||||| || |||||| || |||| ||||||| | Sbjct: 219 cttccagagttgattcctcatcacatgttgctccgcatgcccatcagccttctcatagtt 278 Query: 295 ttgatgctgctggaactgctttggattctgcaccatcttgtagaccatgggagcgtggag 354 | ||||| ||||||||||||||||||||||||| || ||||| |||||||| || |||| Sbjct: 279 tcgatgccactggaactgctttggattctgcaccgtcatgtaggccatgggaacgcggag 338 Query: 355 acttacttcgtcgactggcaacattcaaaccttcaacttgggatgctaagccgaaggctg 414 |||||||||||||||||||||||| || ||| ||||||||| | ||| ||| ||||||| Sbjct: 339 acttacttcgtcgactggcaacatataagcctacaacttgggcttctaggcctaaggctg 398 Query: 415 ctagttcattggcttgt 431 ||||||| ||||||||| Sbjct: 399 ctagttctttggcttgt 415 Score = 99.6 bits (50), Expect = 7e-18 Identities = 53/54 (98%) Strand = Plus / Plus Query: 61 gaggggagatgcgggaggaggtcaggagctcgtcgggggcggcggccgagccgc 114 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 75 gaggggagatgcgggaggaggtgaggagctcgtcgggggcggcggccgagccgc 128
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 186 bits (94), Expect = 4e-44 Identities = 190/222 (85%) Strand = Plus / Minus Query: 175 cctcatcacctgctatgcaaattaatatagtaagcatagattggctgggtaacagacagg 234 |||| ||||||||||||||| |||| | | |||||||||||| ||||| |||||| | Sbjct: 32294209 cctcgtcacctgctatgcaagctaatgttgccagcatagattggtcgggtagcagacaag 32294150 Query: 235 cttccagggttgattcctcatcacacgttgcaccacatgcctatgggcctgctcatagct 294 ||||||| ||||||||||||||||| ||||| || |||||| || |||| ||||||| | Sbjct: 32294149 cttccagagttgattcctcatcacatgttgctccgcatgcccatcagccttctcatagtt 32294090 Query: 295 ttgatgctgctggaactgctttggattctgcaccatcttgtagaccatgggagcgtggag 354 | ||||| ||||||||||||||||||||||||| || ||||| |||||||| || |||| Sbjct: 32294089 tcgatgccactggaactgctttggattctgcaccgtcatgtaggccatgggaacgcggag 32294030 Query: 355 acttacttcgtcgactggcaacattcaaaccttcaacttggg 396 |||||||||||||||||||||||| || ||| ||||||||| Sbjct: 32294029 acttacttcgtcgactggcaacatataagcctacaacttggg 32293988 Score = 99.6 bits (50), Expect = 7e-18 Identities = 53/54 (98%) Strand = Plus / Minus Query: 61 gaggggagatgcgggaggaggtcaggagctcgtcgggggcggcggccgagccgc 114 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32295032 gaggggagatgcgggaggaggtgaggagctcgtcgggggcggcggccgagccgc 32294979 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 tcgtcgtcgccgccgcccacc 152 ||||||||||||||||||||| Sbjct: 30076743 tcgtcgtcgccgccgcccacc 30076723 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 cgtccggtcgtcgtcgccgccgcc 148 |||| ||||||||||||||||||| Sbjct: 34592191 cgtctggtcgtcgtcgccgccgcc 34592168
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence Length = 102751 Score = 186 bits (94), Expect = 4e-44 Identities = 190/222 (85%) Strand = Plus / Minus Query: 175 cctcatcacctgctatgcaaattaatatagtaagcatagattggctgggtaacagacagg 234 |||| ||||||||||||||| |||| | | |||||||||||| ||||| |||||| | Sbjct: 27976 cctcgtcacctgctatgcaagctaatgttgccagcatagattggtcgggtagcagacaag 27917 Query: 235 cttccagggttgattcctcatcacacgttgcaccacatgcctatgggcctgctcatagct 294 ||||||| ||||||||||||||||| ||||| || |||||| || |||| ||||||| | Sbjct: 27916 cttccagagttgattcctcatcacatgttgctccgcatgcccatcagccttctcatagtt 27857 Query: 295 ttgatgctgctggaactgctttggattctgcaccatcttgtagaccatgggagcgtggag 354 | ||||| ||||||||||||||||||||||||| || ||||| |||||||| || |||| Sbjct: 27856 tcgatgccactggaactgctttggattctgcaccgtcatgtaggccatgggaacgcggag 27797 Query: 355 acttacttcgtcgactggcaacattcaaaccttcaacttggg 396 |||||||||||||||||||||||| || ||| ||||||||| Sbjct: 27796 acttacttcgtcgactggcaacatataagcctacaacttggg 27755 Score = 99.6 bits (50), Expect = 7e-18 Identities = 53/54 (98%) Strand = Plus / Minus Query: 61 gaggggagatgcgggaggaggtcaggagctcgtcgggggcggcggccgagccgc 114 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 28799 gaggggagatgcgggaggaggtgaggagctcgtcgggggcggcggccgagccgc 28746
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 186 bits (94), Expect = 4e-44 Identities = 190/222 (85%) Strand = Plus / Minus Query: 175 cctcatcacctgctatgcaaattaatatagtaagcatagattggctgggtaacagacagg 234 |||| ||||||||||||||| |||| | | |||||||||||| ||||| |||||| | Sbjct: 32384719 cctcgtcacctgctatgcaagctaatgttgccagcatagattggtcgggtagcagacaag 32384660 Query: 235 cttccagggttgattcctcatcacacgttgcaccacatgcctatgggcctgctcatagct 294 ||||||| ||||||||||||||||| ||||| || |||||| || |||| ||||||| | Sbjct: 32384659 cttccagagttgattcctcatcacatgttgctccgcatgcccatcagccttctcatagtt 32384600 Query: 295 ttgatgctgctggaactgctttggattctgcaccatcttgtagaccatgggagcgtggag 354 | ||||| ||||||||||||||||||||||||| || ||||| |||||||| || |||| Sbjct: 32384599 tcgatgccactggaactgctttggattctgcaccgtcatgtaggccatgggaacgcggag 32384540 Query: 355 acttacttcgtcgactggcaacattcaaaccttcaacttggg 396 |||||||||||||||||||||||| || ||| ||||||||| Sbjct: 32384539 acttacttcgtcgactggcaacatataagcctacaacttggg 32384498 Score = 99.6 bits (50), Expect = 7e-18 Identities = 53/54 (98%) Strand = Plus / Minus Query: 61 gaggggagatgcgggaggaggtcaggagctcgtcgggggcggcggccgagccgc 114 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32385542 gaggggagatgcgggaggaggtgaggagctcgtcgggggcggcggccgagccgc 32385489 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 tcgtcgtcgccgccgcccacc 152 ||||||||||||||||||||| Sbjct: 30168315 tcgtcgtcgccgccgcccacc 30168295 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 cgtccggtcgtcgtcgccgccgcc 148 |||| ||||||||||||||||||| Sbjct: 34682263 cgtctggtcgtcgtcgccgccgcc 34682240
>ref|XM_476650.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3250 Score = 117 bits (59), Expect = 3e-23 Identities = 105/119 (88%), Gaps = 1/119 (0%) Strand = Plus / Plus Query: 326 accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 385 ||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||| | Sbjct: 323 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 382 Query: 386 ttcaacttgggatgctaagccgaaggctgctagttcattggcttgttctc-aagaggct 443 |||||| |||| | ||||||| ||||||||||||||| |||||||| ||| |||||||| Sbjct: 383 ttcaacatgggcttctaagccaaaggctgctagttcactggcttgtgctcgaagaggct 441
>dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M17, full insert sequence Length = 3250 Score = 117 bits (59), Expect = 3e-23 Identities = 105/119 (88%), Gaps = 1/119 (0%) Strand = Plus / Plus Query: 326 accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 385 ||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||| | Sbjct: 323 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 382 Query: 386 ttcaacttgggatgctaagccgaaggctgctagttcattggcttgttctc-aagaggct 443 |||||| |||| | ||||||| ||||||||||||||| |||||||| ||| |||||||| Sbjct: 383 ttcaacatgggcttctaagccaaaggctgctagttcactggcttgtgctcgaagaggct 441
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 326 accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 385 ||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||| | Sbjct: 2671434 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 2671375 Query: 386 ttcaacttgggatgctaagccgaagg 411 |||||| |||| | ||||||| |||| Sbjct: 2671374 ttcaacatgggcttctaagccaaagg 2671349 Score = 40.1 bits (20), Expect = 6.0 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 409 aggctgctagttcattggcttgttctc-aagaggct 443 |||||||||||||| |||||||| ||| |||||||| Sbjct: 2670669 aggctgctagttcactggcttgtgctcgaagaggct 2670634
>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1027_G06 Length = 121885 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 326 accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 385 ||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||| | Sbjct: 97152 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 97093 Query: 386 ttcaacttgggatgctaagccgaagg 411 |||||| |||| | ||||||| |||| Sbjct: 97092 ttcaacatgggcttctaagccaaagg 97067 Score = 40.1 bits (20), Expect = 6.0 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 409 aggctgctagttcattggcttgttctc-aagaggct 443 |||||||||||||| |||||||| ||| |||||||| Sbjct: 96387 aggctgctagttcactggcttgtgctcgaagaggct 96352
>gb|AC015688.11| Homo sapiens chromosome 17, clone RP11-19P22, complete sequence Length = 152351 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 278 tgggcctgctcatagctttgatgctgctgg 307 ||||||||||||| |||||| ||||||||| Sbjct: 77109 tgggcctgctcatggctttgttgctgctgg 77138
>ref|XM_475198.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1806 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 agctcgtcgggggcggcggcc 107 ||||||||||||||||||||| Sbjct: 131 agctcgtcgggggcggcggcc 151
>ref|XM_469663.1| Oryza sativa (japonica cultivar-group), mRNA Length = 513 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 tcgtcgtcgccgccgcccacc 152 ||||||||||||||||||||| Sbjct: 251 tcgtcgtcgccgccgcccacc 231
>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10, complete sequence Length = 156772 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 119 cgccgtcgtccggtcgtcgtcgccg 143 ||||||||||| ||||||||||||| Sbjct: 53918 cgccgtcgtcccgtcgtcgtcgccg 53894
>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21, complete sequence Length = 151267 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 agctcgtcgggggcggcggcc 107 ||||||||||||||||||||| Sbjct: 91058 agctcgtcgggggcggcggcc 91038
>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete sequence Length = 163972 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 tcgtcgtcgccgccgcccacc 152 ||||||||||||||||||||| Sbjct: 147152 tcgtcgtcgccgccgcccacc 147172
>emb|AL022327.17|HS355C18 Human DNA sequence from clone RP3-355C18 on chromosome 22q13.3 Contains the KIAA0027 gene, ESTs, STSs, GSSs and seven putative CpG islands, complete sequence Length = 101270 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 accccaggagagggaggagcg 38 ||||||||||||||||||||| Sbjct: 59034 accccaggagagggaggagcg 59054
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 tcgtcgtcgccgccgcccacc 152 ||||||||||||||||||||| Sbjct: 30858 tcgtcgtcgccgccgcccacc 30878
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 100 cggcggccgagccgcaggtcgccgt 124 |||||||| |||||||||||||||| Sbjct: 3529191 cggcggccaagccgcaggtcgccgt 3529167
>gb|AC069549.5| Homo sapiens chromosome 10 clone RP11-575A19, complete sequence Length = 170554 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 ttggctgggtaacagacaggc 235 ||||||||||||||||||||| Sbjct: 156191 ttggctgggtaacagacaggc 156211
>gb|AC137589.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0072L08, complete sequence Length = 152272 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 gtcgtcgtcgccgccgcccac 151 ||||||||||||||||||||| Sbjct: 73758 gtcgtcgtcgccgccgcccac 73778
>gb|AC144558.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0072L08, sequencing in progress, complete sequence Length = 152272 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 gtcgtcgtcgccgccgcccac 151 ||||||||||||||||||||| Sbjct: 73758 gtcgtcgtcgccgccgcccac 73778
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 ccggtcgtcgtcgccgccgcc 148 ||||||||||||||||||||| Sbjct: 9064357 ccggtcgtcgtcgccgccgcc 9064337
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 gtcgtcgtcgccgccgcccac 151 ||||||||||||||||||||| Sbjct: 21071443 gtcgtcgtcgccgccgcccac 21071463
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 agctcgtcgggggcggcggcc 107 ||||||||||||||||||||| Sbjct: 19169160 agctcgtcgggggcggcggcc 19169140 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 119 cgccgtcgtccggtcgtcgtcgccg 143 ||||||||||| ||||||||||||| Sbjct: 4167439 cgccgtcgtcccgtcgtcgtcgccg 4167415
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 tcgtcgtcgccgccgcccacc 152 ||||||||||||||||||||| Sbjct: 12640654 tcgtcgtcgccgccgcccacc 12640634 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 119 cgccgtcgtccggtcgtcgtcgccgccg 146 ||||||||||| |||||||||| ||||| Sbjct: 4483425 cgccgtcgtccagtcgtcgtcgtcgccg 4483398
>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1134_B09 Length = 105247 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 tcgtcgtcgccgccgcccacc 152 ||||||||||||||||||||| Sbjct: 37713 tcgtcgtcgccgccgcccacc 37693
>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0572D06 Length = 148920 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 tcgtcgtcgccgccgcccacc 152 ||||||||||||||||||||| Sbjct: 145187 tcgtcgtcgccgccgcccacc 145167
>dbj|AK103197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122A02, full insert sequence Length = 1058 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 119 cgccgtcgtccggtcgtcgtcgccg 143 ||||||||||| ||||||||||||| Sbjct: 274 cgccgtcgtcccgtcgtcgtcgccg 298
>dbj|AK100181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030B10, full insert sequence Length = 2205 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 agctcgtcgggggcggcggcc 107 ||||||||||||||||||||| Sbjct: 194 agctcgtcgggggcggcggcc 214
>dbj|AK069649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030B11, full insert sequence Length = 2205 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 agctcgtcgggggcggcggcc 107 ||||||||||||||||||||| Sbjct: 194 agctcgtcgggggcggcggcc 214
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 gtcgtcgtcgccgccgcccac 151 ||||||||||||||||||||| Sbjct: 21381684 gtcgtcgtcgccgccgcccac 21381704
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 ccggtcgtcgtcgccgccgcc 148 ||||||||||||||||||||| Sbjct: 9064242 ccggtcgtcgtcgccgccgcc 9064222
>emb|AL844496.4|CNS08CAT Oryza sativa chromosome 12, . BAC OSJNBb0026N09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135462 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 ccggtcgtcgtcgccgccgcc 148 ||||||||||||||||||||| Sbjct: 133126 ccggtcgtcgtcgccgccgcc 133106
>emb|AL713903.5|CNS07YQ3 Oryza sativa chromosome 12, . BAC OJ1471_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103007 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 ccggtcgtcgtcgccgccgcc 148 ||||||||||||||||||||| Sbjct: 53736 ccggtcgtcgtcgccgccgcc 53756
>ref|NM_185089.1| Oryza sativa (japonica cultivar-group), mRNA Length = 546 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 cgtccggtcgtcgtcgccgccgcc 148 |||| ||||||||||||||||||| Sbjct: 19 cgtctggtcgtcgtcgccgccgcc 42
>ref|XM_464325.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1266 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 119 cgccgtcgtccggtcgtcgtcgccgccg 146 ||||||||||| |||||||||| ||||| Sbjct: 1224 cgccgtcgtccagtcgtcgtcgtcgccg 1197
>ref|XM_463623.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1182 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 cggtcgtcgtcgccgccgcc 148 |||||||||||||||||||| Sbjct: 566 cggtcgtcgtcgccgccgcc 585
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 attttccccattccacccca 23 |||||||||||||||||||| Sbjct: 1243980 attttccccattccacccca 1243999
>emb|CR726813.2|CNS0GNR7 Tetraodon nigroviridis full-length cDNA Length = 1453 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ggtcgtcgtcgccgccgccc 149 |||||||||||||||||||| Sbjct: 363 ggtcgtcgtcgccgccgccc 344
>emb|AL139239.18| Human DNA sequence from clone RP11-19C6 on chromosome 10 Contains the 5' end of the CRTAC1 gene for cartilage acidic protein 1 and two CpG islands, complete sequence Length = 161235 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 138 tcgccgccgcccaccccggtggcc 161 ||||||||||||||||| |||||| Sbjct: 160325 tcgccgccgcccaccccagtggcc 160302
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence Length = 164236 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 cgtccggtcgtcgtcgccgccgcc 148 |||| ||||||||||||||||||| Sbjct: 49908 cgtctggtcgtcgtcgccgccgcc 49885
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 cgccgtcgtccggtcgtcgt 138 |||||||||||||||||||| Sbjct: 1504377 cgccgtcgtccggtcgtcgt 1504396
>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence Length = 984602 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 tatgcaaattaatatagtaa 207 |||||||||||||||||||| Sbjct: 924474 tatgcaaattaatatagtaa 924493
>gb|AC087380.3| Homo sapiens chromosome 11, clone RP11-454O22, complete sequence Length = 200723 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 aacattcaaaccttcaactt 393 |||||||||||||||||||| Sbjct: 15992 aacattcaaaccttcaactt 15973
>gb|AF391800.1|AF391800 Homo sapiens aortic aneurysm antigenic protein clone 4 mRNA, partial cds Length = 198 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 ctgggtaacagacaggcttccagg 242 |||| ||||||||||||||||||| Sbjct: 69 ctggttaacagacaggcttccagg 46
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cggtcgtcgtcgccgccgcc 148 |||||||||||||||||||| Sbjct: 40135199 cggtcgtcgtcgccgccgcc 40135180 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/39 (89%), Gaps = 2/39 (5%) Strand = Plus / Plus Query: 110 gccgcaggtcgccgtcgtccggtcgtcgtcgccgccgcc 148 ||||| ||||||||||||| ||||||| |||||||||| Sbjct: 38884500 gccgctggtcgccgtcgtc--gtcgtcgccgccgccgcc 38884536
>gb|AF137396.2|AF137396 Homo sapiens ubiquilin 3, HOR 5'Beta14, HOR5'Beta13, HOR5'Beta12, and HOR5'Beta11 genes, complete cds; HOR 5'Beta10 and HOR5'Beta9 pseudogenes, complete sequence; HOR5'Beta8 and HOR5'Beta7 genes, complete cds; CHR11ORF1 and amphiphysin pseudogenes, complete sequence; HOR5'Beta6 and HOR5'Beta5 genes, complete cds; HOR5'Beta4 pseudogene, complete sequence; HOR 5'Beta3 genes, complete cds; HOR5'Beta2 pseudogene, complete sequence; and HOR 5'Beta1 gene, complete cds Length = 219955 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 aacattcaaaccttcaactt 393 |||||||||||||||||||| Sbjct: 142569 aacattcaaaccttcaactt 142588
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cggtcgtcgtcgccgccgcc 148 |||||||||||||||||||| Sbjct: 78283 cggtcgtcgtcgccgccgcc 78264
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1078G07 Length = 199457 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/39 (89%), Gaps = 2/39 (5%) Strand = Plus / Plus Query: 110 gccgcaggtcgccgtcgtccggtcgtcgtcgccgccgcc 148 ||||| ||||||||||||| ||||||| |||||||||| Sbjct: 157382 gccgctggtcgccgtcgtc--gtcgtcgccgccgccgcc 157418
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cggtcgtcgtcgccgccgcc 148 |||||||||||||||||||| Sbjct: 977 cggtcgtcgtcgccgccgcc 958
>gb|AC007131.4| Homo sapiens BAC clone RP11-179A20 from 2, complete sequence Length = 160087 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 caaattaatatagtaagcat 211 |||||||||||||||||||| Sbjct: 9470 caaattaatatagtaagcat 9451
>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete sequence Length = 129302 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 cgtccggtcgtcgtcgccgccgcc 148 |||| ||||||||||||||||||| Sbjct: 51142 cgtctggtcgtcgtcgccgccgcc 51165
>gb|AC104389.8| Homo sapiens chromosome 11, clone CTD-2643I7, complete sequence Length = 207343 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 aacattcaaaccttcaactt 393 |||||||||||||||||||| Sbjct: 172596 aacattcaaaccttcaactt 172577
>gb|AC146357.3| Otolemur garnettii clone CH256-396G19, complete sequence Length = 181866 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 attttccccattccacccca 23 |||||||||||||||||||| Sbjct: 137929 attttccccattccacccca 137948
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 gtccggtcgtcgtcgccgccgccc 149 ||||||||| |||||||||||||| Sbjct: 3302897 gtccggtcgccgtcgccgccgccc 3302920
>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696G06 Length = 142571 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/39 (89%), Gaps = 2/39 (5%) Strand = Plus / Plus Query: 110 gccgcaggtcgccgtcgtccggtcgtcgtcgccgccgcc 148 ||||| ||||||||||||| ||||||| |||||||||| Sbjct: 49286 gccgctggtcgccgtcgtc--gtcgtcgccgccgccgcc 49322
>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1297_C09 Length = 163378 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 119 cgccgtcgtccggtcgtcgtcgccgccg 146 ||||||||||| |||||||||| ||||| Sbjct: 18804 cgccgtcgtccagtcgtcgtcgtcgccg 18777
>dbj|AK109894.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E11, full insert sequence Length = 699 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 cgtccggtcgtcgtcgccgccgcc 148 |||| ||||||||||||||||||| Sbjct: 49 cgtctggtcgtcgtcgccgccgcc 72
>dbj|AK103300.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125C09, full insert sequence Length = 933 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/39 (89%), Gaps = 2/39 (5%) Strand = Plus / Plus Query: 110 gccgcaggtcgccgtcgtccggtcgtcgtcgccgccgcc 148 ||||| ||||||||||||| ||||||| |||||||||| Sbjct: 92 gccgctggtcgccgtcgtc--gtcgtcgccgccgccgcc 128
>dbj|AK066552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K05, full insert sequence Length = 1419 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 cggtcgtcgtcgccgccgcc 148 |||||||||||||||||||| Sbjct: 682 cggtcgtcgtcgccgccgcc 701
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 caggagagggaggagcgaga 41 |||||||||||||||||||| Sbjct: 1922609 caggagagggaggagcgaga 1922628 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,611,635 Number of Sequences: 3902068 Number of extensions: 4611635 Number of successful extensions: 106479 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 104767 Number of HSP's gapped (non-prelim): 1737 length of query: 443 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 421 effective length of database: 17,147,199,772 effective search space: 7218971104012 effective search space used: 7218971104012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
