ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl39e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464583.1| Oryza sativa (japonica cultivar-group), mRNA 450 e-123
2dbj|AK111584.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 8e-55
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 182 7e-43
4dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic D... 182 7e-43
5ref|XM_464582.1| Oryza sativa (japonica cultivar-group), mRNA 174 2e-40
6gb|DQ122786.1| Medicago sativa clone H47 coatomer protein comple... 168 1e-38
7ref|NM_112468.2| Arabidopsis thaliana protein transporter AT3G15... 123 6e-25
8ref|NM_180262.1| Arabidopsis thaliana protein transporter AT3G15... 123 6e-25
9ref|NM_180261.1| Arabidopsis thaliana protein transporter AT3G15... 123 6e-25
10gb|AY120786.1| Arabidopsis thaliana putative coatomer complex su... 123 6e-25
11dbj|AB012247.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 123 6e-25
12gb|BT001201.1| Arabidopsis thaliana putative coatomer complex su... 123 6e-25
13ref|NM_104114.1| Arabidopsis thaliana protein transporter AT1G52... 113 5e-22
14ref|NM_106648.2| Arabidopsis thaliana protein transporter AT1G79... 113 5e-22
15gb|AY090955.1| Arabidopsis thaliana putative coatomer protein co... 113 5e-22
16gb|AC037424.10|AC037424 Arabidopsis thaliana chromosome 1 BAC F1... 113 5e-22
17gb|AC011717.6|AC011717 Arabidopsis thaliana chromosome 1 BAC F19... 101 2e-18
18gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18... 101 2e-18
19dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
20dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
21ref|XM_516784.1| PREDICTED: Pan troglodytes similar to coatomer ... 54 4e-04
22gb|BC000326.2| Homo sapiens coatomer protein complex, subunit be... 54 4e-04
23ref|NM_004766.1| Homo sapiens coatomer protein complex, subunit ... 54 4e-04
24emb|X70476.1|HSCTMRSU H.sapiens subunit of coatomer complex 54 4e-04
25emb|CR860632.1| Pongo pygmaeus mRNA; cDNA DKFZp459D1624 (from cl... 54 4e-04
26dbj|AK128561.1| Homo sapiens cDNA FLJ46720 fis, clone TRACH30185... 54 4e-04
27gb|AC024933.34| Homo sapiens 3 BAC RP11-219D15 (Roswell Park Can... 54 4e-04
28ref|XM_534283.2| PREDICTED: Canis familiaris similar to coatomer... 52 0.002
29ref|NM_015827.1| Mus musculus coatomer protein complex, subunit ... 46 0.10
30gb|AC117214.3| Mus musculus BAC clone RP23-307B15 from chromosom... 46 0.10
31emb|X72756.1|BTBETPCOP B.taurus bt betaprime cop mRNA 46 0.10
32dbj|AK153352.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 46 0.10
33dbj|AB169906.1| Macaca fascicularis brain cDNA, clone: QtrA-1258... 46 0.10
34dbj|AK088064.1| Mus musculus 2 days neonate thymus thymic cells ... 46 0.10
35ref|NM_174281.2| Bos taurus coatomer protein complex, subunit be... 46 0.10
36gb|BC006675.1| Mus musculus coatomer protein complex, subunit be... 46 0.10
37gb|AC140449.3| Mus musculus BAC clone RP24-116C1 from 9, complet... 46 0.10
38gb|BC010842.1| Mus musculus cDNA clone IMAGE:3485707, containing... 46 0.10
39emb|AJ271782.1|XLA271782 Xenopus laevis partial id3 gene, enhancer 44 0.41
40gb|AC117819.11| Mus musculus chromosome 1, clone RP24-576P17, co... 42 1.6
41gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.6
42gb|AC148006.4| Mus musculus BAC clone RP23-298P21 from chromosom... 42 1.6
43gb|AC116744.8| Mus musculus chromosome 19, clone RP23-79B16, com... 42 1.6
44gb|AC163268.4| Mus musculus chromosome 1, clone RP24-63C6, compl... 42 1.6
45ref|NM_100447.2| Arabidopsis thaliana transferase, transferring ... 40 6.4
46gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, co... 40 6.4
47ref|XM_423797.1| PREDICTED: Gallus gallus similar to sodium bica... 40 6.4
48ref|XM_423758.1| PREDICTED: Gallus gallus similar to sodium bica... 40 6.4
49gb|AE006401.1| Lactococcus lactis subsp. lactis IL1403 section 1... 40 6.4
50gb|AC145952.3| Pan troglodytes BAC clone RP43-18D16 from 7, comp... 40 6.4
51gb|AY808633.1| Schistosoma japonicum SJCHGC04487 protein mRNA, p... 40 6.4
52gb|AC156273.7| Mus musculus 10 BAC RP24-275P22 (Roswell Park Can... 40 6.4
53gb|AC131177.9| Mus musculus chromosome 1, clone RP23-374I10, com... 40 6.4
54gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 genom... 40 6.4 
>ref|XM_464583.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2733

 Score =  450 bits (227), Expect = e-123
 Identities = 299/323 (92%)
 Strand = Plus / Plus

                                                                       
Query: 149 atgccgctccggttggatatcaagaggaagctcgcgcagaggtcggagagggtcaagtcc 208
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgccgctcaggttggatatcaagaggaagctcgcgcagaggtcggagagggtcaagtcc 60

                                                                       
Query: 209 gcggatctgcatccgacagagccatggattttgtcgagtctttactcggggagtgtctgc 268
           | ||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||||
Sbjct: 61  gtggatctgcatccgaccgagccatggattttgtcgagtctgtattcagggagcgtctgc 120

                                                                       
Query: 269 atctggaactaccaaacgcagacaatggtgaaatcatttgaagtcacagagttaccggtt 328
           |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 121 atctggaactaccagacgcagacgatggtgaaatcatttgaagtcacagagttaccagtt 180

                                                                       
Query: 329 cgttcggctaaaattattgcacgaaagcaatgggtcgttgctggtgccgatgatatgttt 388
           || ||  ||||| |||| ||||| || |||||| | ||||||||||||||||||||||| 
Sbjct: 181 cggtcatctaaatttatcgcacggaaacaatggatagttgctggtgccgatgatatgttc 240

                                                                       
Query: 389 atccgtgtgtacaattacaatacaatggataaggtcaaggtatttgaagctcatactgat 448
           || |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 241 atacgtgtgtacaattacaatacgatggataaggtcaaggtttttgaagctcatacggat 300

                                  
Query: 449 tacatcaggtgtgtggctgttca 471
           |||||||||||||||||||||||
Sbjct: 301 tacatcaggtgtgtggctgttca 323
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>dbj|AK111584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089O14, full
           insert sequence
          Length = 3391

 Score =  222 bits (112), Expect = 8e-55
 Identities = 280/336 (83%)
 Strand = Plus / Plus

                                                                       
Query: 140 gccgccacaatgccgctccggttggatatcaagaggaagctcgcgcagaggtcggagagg 199
           |||||||| ||||||||| ||||||| |||||||||||| | |||||  |||||||||||
Sbjct: 171 gccgccaccatgccgctcaggttggagatcaagaggaagtttgcgcaacggtcggagagg 230

                                                                       
Query: 200 gtcaagtccgcggatctgcatccgacagagccatggattttgtcgagtctttactcgggg 259
           |||||||| | ||||||||| || || |||||||||||  |||||||||||||||| |||
Sbjct: 231 gtcaagtcggtggatctgcaccccacggagccatggatcctgtcgagtctttactccggg 290

                                                                       
Query: 260 agtgtctgcatctggaactaccaaacgcagacaatggtgaaatcatttgaagtcacagag 319
           || || ||||||||| |||| ||  |||||||||||||||| |||||||||||  |||| 
Sbjct: 291 agcgtgtgcatctgggactatcagtcgcagacaatggtgaagtcatttgaagtttcagaa 350

                                                                       
Query: 320 ttaccggttcgttcggctaaaattattgcacgaaagcaatgggtcgttgctggtgccgat 379
           || || || || || || ||| ||||| |||| || |||||||| || |||||||| || 
Sbjct: 351 ttgccagtgcggtcagcaaaatttatttcacggaaacaatgggttgtagctggtgcagac 410

                                                                       
Query: 380 gatatgtttatccgtgtgtacaattacaatacaatggataaggtcaaggtatttgaagct 439
           |||||||| || ||||| ||||| ||||| || ||||| || || ||||| ||||| |||
Sbjct: 411 gatatgttcattcgtgtctacaactacaacacgatggacaaagttaaggtttttgaggct 470

                                               
Query: 440 catactgattacatcaggtgtgtggctgttcatcca 475
           ||||||||||| || || ||||| || || ||||||
Sbjct: 471 catactgattatattagatgtgttgcagtccatcca 506
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  182 bits (92), Expect = 7e-43
 Identities = 125/136 (91%)
 Strand = Plus / Minus

                                                                           
Query: 336     ctaaaattattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtg 395
               ||||| |||| ||||| || |||||| | ||||||||||||||||||||||| || ||||
Sbjct: 6139514 ctaaatttatcgcacggaaacaatggatagttgctggtgccgatgatatgttcatacgtg 6139455

                                                                           
Query: 396     tgtacaattacaatacaatggataaggtcaaggtatttgaagctcatactgattacatca 455
               |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 6139454 tgtacaattacaatacgatggataaggtcaaggtttttgaagctcatacggattacatca 6139395

                               
Query: 456     ggtgtgtggctgttca 471
               ||||||||||||||||
Sbjct: 6139394 ggtgtgtggctgttca 6139379



 Score =  174 bits (88), Expect = 2e-40
 Identities = 109/116 (93%)
 Strand = Plus / Minus

                                                                           
Query: 356     caatgggtcgttgctggtgccgatgatatgtttatccgtgtgtacaattacaatacaatg 415
               |||||||| |||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct: 6126804 caatgggtagttgctggtgccgacgatatgttcatacgtgtgtacaattacaatacgatg 6126745

                                                                       
Query: 416     gataaggtcaaggtatttgaagctcatactgattacatcaggtgtgtggctgttca 471
               |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 6126744 gataaggtcaaggtttttgaagctcatacggattacatcaggtgtgtggctgttca 6126689



 Score =  113 bits (57), Expect = 5e-22
 Identities = 63/65 (96%)
 Strand = Plus / Minus

                                                                           
Query: 171     agaggaagctcgcgcagaggtcggagagggtcaagtccgcggatctgcatccgacagagc 230
               ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 6140426 agaggaagctcgcgcagaggtcggagagggtcaagtccgtggatctgcatccgaccgagc 6140367

                    
Query: 231     catgg 235
               |||||
Sbjct: 6140366 catgg 6140362



 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                           
Query: 171     agaggaagctcgcgcagaggtcggagagggtcaagtccgcggatctgcatccgacagagc 230
               |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct: 6127729 agaggaagctcgcgcagaggtcggagagggccaagtccgtggatctgcatccgaccgagc 6127670

                    
Query: 231     catgg 235
               |||||
Sbjct: 6127669 catgg 6127665



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                       
Query: 234     ggattttgtcgagtctttactcggggagtgtctgcatctggaactaccaaacgcag 289
               |||||||||||||||| || || ||||| |||||||||||||||||||| ||||||
Sbjct: 6140251 ggattttgtcgagtctgtattcagggagcgtctgcatctggaactaccagacgcag 6140196



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                     
Query: 287     cagacaatggtgaaatcatttgaagtcacagagttacc 324
               ||||| ||||||||||||||||||||||||||||||||
Sbjct: 6139638 cagacgatggtgaaatcatttgaagtcacagagttacc 6139601



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                     
Query: 287     cagacaatggtgaaatcatttgaagtcacagagttacc 324
               ||||| ||||||||||||||||||||||||||||||||
Sbjct: 6126945 cagacgatggtgaaatcatttgaagtcacagagttacc 6126908



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                       
Query: 234     ggattttgtcgagtctttactcggggagtgtctgcatctggaactaccaaacgcag 289
               |||||||||||||||| || || ||||| || ||||||||||||||||| ||||||
Sbjct: 6127555 ggattttgtcgagtctgtattcagggagcgtttgcatctggaactaccagacgcag 6127500
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>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1006_A02
          Length = 175153

 Score =  182 bits (92), Expect = 7e-43
 Identities = 125/136 (91%)
 Strand = Plus / Minus

                                                                          
Query: 336    ctaaaattattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtg 395
              ||||| |||| ||||| || |||||| | ||||||||||||||||||||||| || ||||
Sbjct: 104996 ctaaatttatcgcacggaaacaatggatagttgctggtgccgatgatatgttcatacgtg 104937

                                                                          
Query: 396    tgtacaattacaatacaatggataaggtcaaggtatttgaagctcatactgattacatca 455
              |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 104936 tgtacaattacaatacgatggataaggtcaaggtttttgaagctcatacggattacatca 104877

                              
Query: 456    ggtgtgtggctgttca 471
              ||||||||||||||||
Sbjct: 104876 ggtgtgtggctgttca 104861



 Score =  174 bits (88), Expect = 2e-40
 Identities = 109/116 (93%)
 Strand = Plus / Minus

                                                                         
Query: 356   caatgggtcgttgctggtgccgatgatatgtttatccgtgtgtacaattacaatacaatg 415
             |||||||| |||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct: 92286 caatgggtagttgctggtgccgacgatatgttcatacgtgtgtacaattacaatacgatg 92227

                                                                     
Query: 416   gataaggtcaaggtatttgaagctcatactgattacatcaggtgtgtggctgttca 471
             |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 92226 gataaggtcaaggtttttgaagctcatacggattacatcaggtgtgtggctgttca 92171



 Score =  113 bits (57), Expect = 5e-22
 Identities = 63/65 (96%)
 Strand = Plus / Minus

                                                                          
Query: 171    agaggaagctcgcgcagaggtcggagagggtcaagtccgcggatctgcatccgacagagc 230
              ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 105908 agaggaagctcgcgcagaggtcggagagggtcaagtccgtggatctgcatccgaccgagc 105849

                   
Query: 231    catgg 235
              |||||
Sbjct: 105848 catgg 105844



 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                         
Query: 171   agaggaagctcgcgcagaggtcggagagggtcaagtccgcggatctgcatccgacagagc 230
             |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct: 93211 agaggaagctcgcgcagaggtcggagagggccaagtccgtggatctgcatccgaccgagc 93152

                  
Query: 231   catgg 235
             |||||
Sbjct: 93151 catgg 93147



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                      
Query: 234    ggattttgtcgagtctttactcggggagtgtctgcatctggaactaccaaacgcag 289
              |||||||||||||||| || || ||||| |||||||||||||||||||| ||||||
Sbjct: 105733 ggattttgtcgagtctgtattcagggagcgtctgcatctggaactaccagacgcag 105678



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                    
Query: 287    cagacaatggtgaaatcatttgaagtcacagagttacc 324
              ||||| ||||||||||||||||||||||||||||||||
Sbjct: 105120 cagacgatggtgaaatcatttgaagtcacagagttacc 105083



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                   
Query: 287   cagacaatggtgaaatcatttgaagtcacagagttacc 324
             ||||| ||||||||||||||||||||||||||||||||
Sbjct: 92427 cagacgatggtgaaatcatttgaagtcacagagttacc 92390



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 234   ggattttgtcgagtctttactcggggagtgtctgcatctggaactaccaaacgcag 289
             |||||||||||||||| || || ||||| || ||||||||||||||||| ||||||
Sbjct: 93037 ggattttgtcgagtctgtattcagggagcgtttgcatctggaactaccagacgcag 92982
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>ref|XM_464582.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2628

 Score =  174 bits (88), Expect = 2e-40
 Identities = 109/116 (93%)
 Strand = Plus / Plus

                                                                       
Query: 356 caatgggtcgttgctggtgccgatgatatgtttatccgtgtgtacaattacaatacaatg 415
           |||||||| |||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct: 169 caatgggtagttgctggtgccgacgatatgttcatacgtgtgtacaattacaatacgatg 228

                                                                   
Query: 416 gataaggtcaaggtatttgaagctcatactgattacatcaggtgtgtggctgttca 471
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 229 gataaggtcaaggtttttgaagctcatacggattacatcaggtgtgtggctgttca 284



 Score =  165 bits (83), Expect = 2e-37
 Identities = 110/119 (92%)
 Strand = Plus / Plus

                                                                       
Query: 171 agaggaagctcgcgcagaggtcggagagggtcaagtccgcggatctgcatccgacagagc 230
           |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct: 21  agaggaagctcgcgcagaggtcggagagggccaagtccgtggatctgcatccgaccgagc 80

                                                                      
Query: 231 catggattttgtcgagtctttactcggggagtgtctgcatctggaactaccaaacgcag 289
           ||||||||||||||||||| || || ||||| || ||||||||||||||||| ||||||
Sbjct: 81  catggattttgtcgagtctgtattcagggagcgtttgcatctggaactaccagacgcag 139
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>gb|DQ122786.1| Medicago sativa clone H47 coatomer protein complex subunit beta 2
           mRNA, partial cds
          Length = 545

 Score =  168 bits (85), Expect = 1e-38
 Identities = 205/245 (83%)
 Strand = Plus / Plus

                                                                       
Query: 230 ccatggattttgtcgagtctttactcggggagtgtctgcatctggaactaccaaacgcag 289
           |||||||||||| | ||| | ||||| || | |||||| ||||||||||||||| | |||
Sbjct: 223 ccatggattttggcaagtttatactctggaactgtctgtatctggaactaccaatctcag 282

                                                                       
Query: 290 acaatggtgaaatcatttgaagtcacagagttaccggttcgttcggctaaaattattgca 349
           || ||||  ||||| ||||| ||||| |||||||| ||| | || || ||  || |||||
Sbjct: 283 accatggccaaatcttttgaggtcaccgagttaccagttagatcagcgaagtttgttgca 342

                                                                       
Query: 350 cgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtgtgtacaattacaat 409
           || || || ||||| |||||||| || |||||||||||||| ||||| || |||||||| 
Sbjct: 343 cgcaaacagtgggttgttgctggagcagatgatatgtttattcgtgtatataattacaac 402

                                                                       
Query: 410 acaatggataaggtcaaggtatttgaagctcatactgattacatcaggtgtgtggctgtt 469
           || |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| |||
Sbjct: 403 acgatggataaggtcaaagtatttgaagcacatacagattacattaggtgtgtggcagtt 462

                
Query: 470 catcc 474
           |||||
Sbjct: 463 catcc 467
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>ref|NM_112468.2| Arabidopsis thaliana protein transporter AT3G15980 transcript
           variant AT3G15980.2 mRNA, complete cds
          Length = 3067

 Score =  123 bits (62), Expect = 6e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                       
Query: 353 aagcaatgggtcgttgctggtgccgatgatatgtttatccgtgtgtacaattacaataca 412
           ||||||||||| || ||||| || ||||||||||  |||||||| |||||||||||||||
Sbjct: 337 aagcaatgggttgtggctggagcggatgatatgtacatccgtgtatacaattacaataca 396

                                                                       
Query: 413 atggataaggtcaaggtatttgaagctcatactgattacatcaggtgtgtggctgttcat 472
           ||||| |||||||| |||||||| |||||| | |||||||| |||||||| ||||| |||
Sbjct: 397 atggacaaggtcaaagtatttgaggctcattcggattacattaggtgtgtagctgtccat 456

             
Query: 473 cc 474
           ||
Sbjct: 457 cc 458
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>ref|NM_180262.1| Arabidopsis thaliana protein transporter AT3G15980 transcript
           variant AT3G15980.3 mRNA, complete cds
          Length = 2986

 Score =  123 bits (62), Expect = 6e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                       
Query: 353 aagcaatgggtcgttgctggtgccgatgatatgtttatccgtgtgtacaattacaataca 412
           ||||||||||| || ||||| || ||||||||||  |||||||| |||||||||||||||
Sbjct: 337 aagcaatgggttgtggctggagcggatgatatgtacatccgtgtatacaattacaataca 396

                                                                       
Query: 413 atggataaggtcaaggtatttgaagctcatactgattacatcaggtgtgtggctgttcat 472
           ||||| |||||||| |||||||| |||||| | |||||||| |||||||| ||||| |||
Sbjct: 397 atggacaaggtcaaagtatttgaggctcattcggattacattaggtgtgtagctgtccat 456

             
Query: 473 cc 474
           ||
Sbjct: 457 cc 458
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>ref|NM_180261.1| Arabidopsis thaliana protein transporter AT3G15980 transcript
           variant AT3G15980.1 mRNA, complete cds
          Length = 3104

 Score =  123 bits (62), Expect = 6e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                       
Query: 353 aagcaatgggtcgttgctggtgccgatgatatgtttatccgtgtgtacaattacaataca 412
           ||||||||||| || ||||| || ||||||||||  |||||||| |||||||||||||||
Sbjct: 337 aagcaatgggttgtggctggagcggatgatatgtacatccgtgtatacaattacaataca 396

                                                                       
Query: 413 atggataaggtcaaggtatttgaagctcatactgattacatcaggtgtgtggctgttcat 472
           ||||| |||||||| |||||||| |||||| | |||||||| |||||||| ||||| |||
Sbjct: 397 atggacaaggtcaaagtatttgaggctcattcggattacattaggtgtgtagctgtccat 456

             
Query: 473 cc 474
           ||
Sbjct: 457 cc 458
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>gb|AY120786.1| Arabidopsis thaliana putative coatomer complex subunit (At3g15980)
           mRNA, complete cds
          Length = 3103

 Score =  123 bits (62), Expect = 6e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                       
Query: 353 aagcaatgggtcgttgctggtgccgatgatatgtttatccgtgtgtacaattacaataca 412
           ||||||||||| || ||||| || ||||||||||  |||||||| |||||||||||||||
Sbjct: 337 aagcaatgggttgtggctggagcggatgatatgtacatccgtgtatacaattacaataca 396

                                                                       
Query: 413 atggataaggtcaaggtatttgaagctcatactgattacatcaggtgtgtggctgttcat 472
           ||||| |||||||| |||||||| |||||| | |||||||| |||||||| ||||| |||
Sbjct: 397 atggacaaggtcaaagtatttgaggctcattcggattacattaggtgtgtagctgtccat 456

             
Query: 473 cc 474
           ||
Sbjct: 457 cc 458
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>dbj|AB012247.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSL1
          Length = 79355

 Score =  123 bits (62), Expect = 6e-25
 Identities = 107/122 (87%)
 Strand = Plus / Minus

                                                                        
Query: 353  aagcaatgggtcgttgctggtgccgatgatatgtttatccgtgtgtacaattacaataca 412
            ||||||||||| || ||||| || ||||||||||  |||||||| |||||||||||||||
Sbjct: 9413 aagcaatgggttgtggctggagcggatgatatgtacatccgtgtatacaattacaataca 9354

                                                                        
Query: 413  atggataaggtcaaggtatttgaagctcatactgattacatcaggtgtgtggctgttcat 472
            ||||| |||||||| |||||||| |||||| | |||||||| |||||||| ||||| |||
Sbjct: 9353 atggacaaggtcaaagtatttgaggctcattcggattacattaggtgtgtagctgtccat 9294

              
Query: 473  cc 474
            ||
Sbjct: 9293 cc 9292
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>gb|BT001201.1| Arabidopsis thaliana putative coatomer complex subunit (At3g15980)
           mRNA, complete cds
          Length = 2789

 Score =  123 bits (62), Expect = 6e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                       
Query: 353 aagcaatgggtcgttgctggtgccgatgatatgtttatccgtgtgtacaattacaataca 412
           ||||||||||| || ||||| || ||||||||||  |||||||| |||||||||||||||
Sbjct: 205 aagcaatgggttgtggctggagcggatgatatgtacatccgtgtatacaattacaataca 264

                                                                       
Query: 413 atggataaggtcaaggtatttgaagctcatactgattacatcaggtgtgtggctgttcat 472
           ||||| |||||||| |||||||| |||||| | |||||||| |||||||| ||||| |||
Sbjct: 265 atggacaaggtcaaagtatttgaggctcattcggattacattaggtgtgtagctgtccat 324

             
Query: 473 cc 474
           ||
Sbjct: 325 cc 326
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>ref|NM_104114.1| Arabidopsis thaliana protein transporter AT1G52360 mRNA, complete
           cds
          Length = 2781

 Score =  113 bits (57), Expect = 5e-22
 Identities = 111/129 (86%)
 Strand = Plus / Plus

                                                                       
Query: 347 gcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtgtgtacaattac 406
           ||||||||||||||||| || || || || |||||||||| ||||||||| |||||||||
Sbjct: 199 gcacgaaagcaatgggttgtcgcaggagctgatgatatgtatatccgtgtatacaattac 258

                                                                       
Query: 407 aatacaatggataaggtcaaggtatttgaagctcatactgattacatcaggtgtgtggct 466
           || || ||||| ||||| || || ||||| |||||| | || ||||| ||||||||||||
Sbjct: 259 aacaccatggacaaggttaaagtgtttgaggctcattcagactacattaggtgtgtggct 318

                    
Query: 467 gttcatcca 475
           |||||||||
Sbjct: 319 gttcatcca 327
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>ref|NM_106648.2| Arabidopsis thaliana protein transporter AT1G79990 mRNA, complete
           cds
          Length = 3179

 Score =  113 bits (57), Expect = 5e-22
 Identities = 171/209 (81%)
 Strand = Plus / Plus

                                                                       
Query: 266 tgcatctggaactaccaaacgcagacaatggtgaaatcatttgaagtcacagagttaccg 325
           ||||||||||| ||||| || ||||||||||| ||||| || || || || || || || 
Sbjct: 245 tgcatctggaattaccagacccagacaatggtaaaatctttcgacgtgactgaattgcct 304

                                                                       
Query: 326 gttcgttcggctaaaattattgcacgaaagcaatgggtcgttgctggtgccgatgatatg 385
           ||||| || || ||  | |||||||| ||||| ||||| || ||||| || ||||| |||
Sbjct: 305 gttcggtcagcaaagttcattgcacggaagcagtgggttgtagctggagctgatgacatg 364

                                                                       
Query: 386 tttatccgtgtgtacaattacaatacaatggataaggtcaaggtatttgaagctcatact 445
           ||||| ||||| ||||| ||||| || ||||||||| |||| |||||||| |||||| ||
Sbjct: 365 tttattcgtgtctacaactacaacactatggataagatcaaagtatttgaggctcatgct 424

                                        
Query: 446 gattacatcaggtgtgtggctgttcatcc 474
           ||||||||  | ||||| |||||||||||
Sbjct: 425 gattacattcgctgtgttgctgttcatcc 453
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>gb|AY090955.1| Arabidopsis thaliana putative coatomer protein complex, subunit
           beta 2 (beta prime) (At1g79990) mRNA, complete cds
          Length = 3162

 Score =  113 bits (57), Expect = 5e-22
 Identities = 171/209 (81%)
 Strand = Plus / Plus

                                                                       
Query: 266 tgcatctggaactaccaaacgcagacaatggtgaaatcatttgaagtcacagagttaccg 325
           ||||||||||| ||||| || ||||||||||| ||||| || || || || || || || 
Sbjct: 245 tgcatctggaattaccagacccagacaatggtaaaatctttcgacgtgactgaattgcct 304

                                                                       
Query: 326 gttcgttcggctaaaattattgcacgaaagcaatgggtcgttgctggtgccgatgatatg 385
           ||||| || || ||  | |||||||| ||||| ||||| || ||||| || ||||| |||
Sbjct: 305 gttcggtcagcaaagttcattgcacggaagcagtgggttgtagctggagctgatgacatg 364

                                                                       
Query: 386 tttatccgtgtgtacaattacaatacaatggataaggtcaaggtatttgaagctcatact 445
           ||||| ||||| ||||| ||||| || ||||||||| |||| |||||||| |||||| ||
Sbjct: 365 tttattcgtgtctacaactacaacactatggataagatcaaagtatttgaggctcatgct 424

                                        
Query: 446 gattacatcaggtgtgtggctgttcatcc 474
           ||||||||  | ||||| |||||||||||
Sbjct: 425 gattacattcgctgtgttgctgttcatcc 453
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>gb|AC037424.10|AC037424 Arabidopsis thaliana chromosome 1 BAC F19K6 genomic sequence, complete
             sequence
          Length = 75948

 Score =  113 bits (57), Expect = 5e-22
 Identities = 111/129 (86%)
 Strand = Plus / Minus

                                                                         
Query: 347   gcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtgtgtacaattac 406
             ||||||||||||||||| || || || || |||||||||| ||||||||| |||||||||
Sbjct: 32678 gcacgaaagcaatgggttgtcgcaggagctgatgatatgtatatccgtgtatacaattac 32619

                                                                         
Query: 407   aatacaatggataaggtcaaggtatttgaagctcatactgattacatcaggtgtgtggct 466
             || || ||||| ||||| || || ||||| |||||| | || ||||| ||||||||||||
Sbjct: 32618 aacaccatggacaaggttaaagtgtttgaggctcattcagactacattaggtgtgtggct 32559

                      
Query: 467   gttcatcca 475
             |||||||||
Sbjct: 32558 gttcatcca 32550
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>gb|AC011717.6|AC011717 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete
             sequence
          Length = 111301

 Score =  101 bits (51), Expect = 2e-18
 Identities = 111/131 (84%)
 Strand = Plus / Minus

                                                                         
Query: 344   attgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtgtgtacaat 403
             |||||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| ||||| 
Sbjct: 17454 attgcacggaagcagtgggttgtagctggagctgatgacatgtttattcgtgtctacaac 17395

                                                                         
Query: 404   tacaatacaatggataaggtcaaggtatttgaagctcatactgattacatcaggtgtgtg 463
             ||||| || ||||||||| |||| |||||||| |||||| ||||||||||  | ||||| 
Sbjct: 17394 tacaacactatggataagatcaaagtatttgaggctcatgctgattacattcgctgtgtt 17335

                        
Query: 464   gctgttcatcc 474
             |||||||||||
Sbjct: 17334 gctgttcatcc 17324
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>gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete
             sequence
          Length = 116905

 Score =  101 bits (51), Expect = 2e-18
 Identities = 111/131 (84%)
 Strand = Plus / Plus

                                                                         
Query: 344   attgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtgtgtacaat 403
             |||||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| ||||| 
Sbjct: 23490 attgcacggaagcagtgggttgtagctggagctgatgacatgtttattcgtgtctacaac 23549

                                                                         
Query: 404   tacaatacaatggataaggtcaaggtatttgaagctcatactgattacatcaggtgtgtg 463
             ||||| || ||||||||| |||| |||||||| |||||| ||||||||||  | ||||| 
Sbjct: 23550 tacaacactatggataagatcaaagtatttgaggctcatgctgattacattcgctgtgtt 23609

                        
Query: 464   gctgttcatcc 474
             |||||||||||
Sbjct: 23610 gctgttcatcc 23620
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 110/134 (82%)
 Strand = Plus / Minus

                                                                           
Query: 342     ttattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtgtgtaca 401
               ||||| |||| || |||||||| || |||||||| || |||||||| || ||||| ||||
Sbjct: 2327066 ttatttcacggaaacaatgggttgtagctggtgcagacgatatgttcattcgtgtctaca 2327007

                                                                           
Query: 402     attacaatacaatggataaggtcaaggtatttgaagctcatactgattacatcaggtgtg 461
               | ||||| || ||||| || || ||||| ||||| |||||||||||||| || || ||||
Sbjct: 2327006 actacaacacgatggacaaagttaaggtttttgaggctcatactgattatattagatgtg 2326947

                             
Query: 462     tggctgttcatcca 475
               | || || ||||||
Sbjct: 2326946 ttgcagtccatcca 2326933



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                           
Query: 171     agaggaagctcgcgcagaggtcggagagggtcaagtccgcggatctgcatccgacagagc 230
               |||||||| | |||||  ||||||||||||||||||| | ||||||||| || || ||||
Sbjct: 2328167 agaggaagtttgcgcaacggtcggagagggtcaagtcggtggatctgcaccccacggagc 2328108

                    
Query: 231     catgg 235
               |||||
Sbjct: 2328107 catgg 2328103



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                       
Query: 240     tgtcgagtctttactcggggagtgtctgcatctggaacta 279
               |||||||||||||||| ||||| || ||||||||| ||||
Sbjct: 2327975 tgtcgagtctttactccgggagcgtgtgcatctgggacta 2327936



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 286     gcagacaatggtgaaatcatttgaagt 312
               ||||||||||||||| |||||||||||
Sbjct: 2327207 gcagacaatggtgaagtcatttgaagt 2327181
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>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0007O20
          Length = 147363

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 110/134 (82%)
 Strand = Plus / Minus

                                                                         
Query: 342   ttattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtgtgtaca 401
             ||||| |||| || |||||||| || |||||||| || |||||||| || ||||| ||||
Sbjct: 48867 ttatttcacggaaacaatgggttgtagctggtgcagacgatatgttcattcgtgtctaca 48808

                                                                         
Query: 402   attacaatacaatggataaggtcaaggtatttgaagctcatactgattacatcaggtgtg 461
             | ||||| || ||||| || || ||||| ||||| |||||||||||||| || || ||||
Sbjct: 48807 actacaacacgatggacaaagttaaggtttttgaggctcatactgattatattagatgtg 48748

                           
Query: 462   tggctgttcatcca 475
             | || || ||||||
Sbjct: 48747 ttgcagtccatcca 48734



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                         
Query: 171   agaggaagctcgcgcagaggtcggagagggtcaagtccgcggatctgcatccgacagagc 230
             |||||||| | |||||  ||||||||||||||||||| | ||||||||| || || ||||
Sbjct: 49968 agaggaagtttgcgcaacggtcggagagggtcaagtcggtggatctgcaccccacggagc 49909

                  
Query: 231   catgg 235
             |||||
Sbjct: 49908 catgg 49904



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 240   tgtcgagtctttactcggggagtgtctgcatctggaacta 279
             |||||||||||||||| ||||| || ||||||||| ||||
Sbjct: 49776 tgtcgagtctttactccgggagcgtgtgcatctgggacta 49737



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 286   gcagacaatggtgaaatcatttgaagt 312
             ||||||||||||||| |||||||||||
Sbjct: 49008 gcagacaatggtgaagtcatttgaagt 48982
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>ref|XM_516784.1| PREDICTED: Pan troglodytes similar to coatomer protein complex,
           subunit beta 2 (beta prime); coatomer binding complex,
           beta prime subunit; betaprime-COP (LOC460734), mRNA
          Length = 2802

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 211 ggatctgcatccgacagagccatggattttgtcgagtctttac 253
           |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct: 144 ggatctgcatcctacagagccatggatgttggcaagtctttac 186
to top
>gb|BC000326.2| Homo sapiens coatomer protein complex, subunit beta 2 (beta prime),
           mRNA (cDNA clone MGC:8486 IMAGE:2821998), complete cds
          Length = 3088

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 211 ggatctgcatccgacagagccatggattttgtcgagtctttac 253
           |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct: 139 ggatctgcatcctacagagccatggatgttggcaagtctttac 181
to top
>ref|NM_004766.1| Homo sapiens coatomer protein complex, subunit beta 2 (beta prime)
           (COPB2), mRNA
          Length = 3067

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 211 ggatctgcatccgacagagccatggattttgtcgagtctttac 253
           |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct: 131 ggatctgcatcctacagagccatggatgttggcaagtctttac 173
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>emb|X70476.1|HSCTMRSU H.sapiens subunit of coatomer complex
          Length = 3067

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 211 ggatctgcatccgacagagccatggattttgtcgagtctttac 253
           |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct: 131 ggatctgcatcctacagagccatggatgttggcaagtctttac 173
to top
>emb|CR860632.1| Pongo pygmaeus mRNA; cDNA DKFZp459D1624 (from clone DKFZp459D1624)
          Length = 3086

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 211 ggatctgcatccgacagagccatggattttgtcgagtctttac 253
           |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct: 140 ggatctgcatcctacagagccatggatgttggcaagtctttac 182
to top
>dbj|AK128561.1| Homo sapiens cDNA FLJ46720 fis, clone TRACH3018519, weakly  similar
           to Coatomer beta' subunit
          Length = 3530

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 211 ggatctgcatccgacagagccatggattttgtcgagtctttac 253
           |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct: 160 ggatctgcatcctacagagccatggatgttggcaagtctttac 202
to top
>gb|AC024933.34| Homo sapiens 3 BAC RP11-219D15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 169659

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 211    ggatctgcatccgacagagccatggattttgtcgagtctttac 253
              |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct: 127842 ggatctgcatcctacagagccatggatgttggcaagtctttac 127800
to top
>ref|XM_534283.2| PREDICTED: Canis familiaris similar to coatomer protein complex,
           subunit beta 2 (beta prime) (LOC477088), mRNA
          Length = 3086

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 83/102 (81%)
 Strand = Plus / Plus

                                                                       
Query: 211 ggatctgcatccgacagagccatggattttgtcgagtctttactcggggagtgtctgcat 270
           |||| ||||||| |||||||||||||| ||| | |||||||||   || ||||| ||| |
Sbjct: 147 ggatttgcatcctacagagccatggatgttggcaagtctttacaatggcagtgtgtgcgt 206

                                                     
Query: 271 ctggaactaccaaacgcagacaatggtgaaatcatttgaagt 312
            |||||  |  |||| |||||| |||||||| ||||||||||
Sbjct: 207 ttggaatcatgaaacacagacattggtgaaaacatttgaagt 248
to top
>ref|NM_015827.1| Mus musculus coatomer protein complex, subunit beta 2 (beta prime)
           (Copb2), mRNA
          Length = 3044

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 211 ggatctgcatccgacagagccatggattttgtcgagtctttac 253
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 154 ggatttgcatcccacagagccatggatgttggctagtctttac 196
to top
>gb|AC117214.3| Mus musculus BAC clone RP23-307B15 from chromosome 9, complete sequence
          Length = 219833

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 211    ggatctgcatccgacagagccatggattttgtcgagtctttac 253
              |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 211991 ggatttgcatcccacagagccatggatgttggctagtctttac 212033
to top
>emb|X72756.1|BTBETPCOP B.taurus bt betaprime cop mRNA
          Length = 2950

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 211 ggatctgcatccgacagagccatggattttgtcgagtctttac 253
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 98  ggatttgcatcctacagagccatggatgttggccagtctttac 140
to top
>dbj|AK153352.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830144P05 product:coatomer
           protein complex, subunit beta 2 (beta prime), full
           insert sequence
          Length = 3044

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 211 ggatctgcatccgacagagccatggattttgtcgagtctttac 253
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 154 ggatttgcatcccacagagccatggatgttggctagtctttac 196
to top
>dbj|AB169906.1| Macaca fascicularis brain cDNA, clone: QtrA-12583, similar to human
           coatomer protein complex, subunit beta 2 (beta
           prime)(COPB2), mRNA, RefSeq: NM_004766.1
          Length = 3114

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 211 ggatctgcatccgacagagccatggattttgtcgagtctttac 253
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 169 ggatttgcatcctacagagccatggatgttggcaagtctttac 211
to top
>dbj|AK088064.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430003B05
           product:coatomer protein complex, subunit beta 2 (beta
           prime), full insert sequence
          Length = 3044

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 211 ggatctgcatccgacagagccatggattttgtcgagtctttac 253
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 154 ggatttgcatcccacagagccatggatgttggctagtctttac 196
to top
>ref|NM_174281.2| Bos taurus coatomer protein complex, subunit beta 2 (beta prime)
           (COPB2), mRNA
          Length = 2950

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 211 ggatctgcatccgacagagccatggattttgtcgagtctttac 253
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 98  ggatttgcatcctacagagccatggatgttggccagtctttac 140
to top
>gb|BC006675.1| Mus musculus coatomer protein complex, subunit beta 2 (beta prime),
           mRNA (cDNA clone MGC:6378 IMAGE:3499585), complete cds
          Length = 3081

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 211 ggatctgcatccgacagagccatggattttgtcgagtctttac 253
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 140 ggatttgcatcccacagagccatggatgttggctagtctttac 182
to top
>gb|AC140449.3| Mus musculus BAC clone RP24-116C1 from 9, complete sequence
          Length = 222299

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 211    ggatctgcatccgacagagccatggattttgtcgagtctttac 253
              |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 209281 ggatttgcatcccacagagccatggatgttggctagtctttac 209239
to top
>gb|BC010842.1| Mus musculus cDNA clone IMAGE:3485707, containing frame-shift
           errors
          Length = 3062

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 211 ggatctgcatccgacagagccatggattttgtcgagtctttac 253
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 143 ggatttgcatcccacagagccatggatgttggctagtctttac 185
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>emb|AJ271782.1|XLA271782 Xenopus laevis partial id3 gene, enhancer
          Length = 444

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 384 tgtttatccgtgtgtacaattacaatacaa 413
           ||||||| | ||||||||||||||||||||
Sbjct: 184 tgtttatacctgtgtacaattacaatacaa 213
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>gb|AC117819.11| Mus musculus chromosome 1, clone RP24-576P17, complete sequence
          Length = 117693

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 288  agacaatggtgaaatcatttgaagtcaca 316
            |||||||||||||| ||||||||| ||||
Sbjct: 7011 agacaatggtgaaagcatttgaagccaca 7039
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>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
              sequence
          Length = 1507550

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 430    atttgaagctcatactgatta 450
              |||||||||||||||||||||
Sbjct: 684279 atttgaagctcatactgatta 684259
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>gb|AC148006.4| Mus musculus BAC clone RP23-298P21 from chromosome 19, complete sequence
          Length = 209327

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 354    agcaatgggtcgttgctggtg 374
              |||||||||||||||||||||
Sbjct: 100041 agcaatgggtcgttgctggtg 100061
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>gb|AC116744.8| Mus musculus chromosome 19, clone RP23-79B16, complete sequence
          Length = 236661

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 354    agcaatgggtcgttgctggtg 374
              |||||||||||||||||||||
Sbjct: 182965 agcaatgggtcgttgctggtg 182945
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>gb|AC163268.4| Mus musculus chromosome 1, clone RP24-63C6, complete sequence
          Length = 224994

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 288    agacaatggtgaaatcatttgaagtcaca 316
              |||||||||||||| ||||||||| ||||
Sbjct: 108564 agacaatggtgaaagcatttgaagccaca 108536
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>ref|NM_100447.2| Arabidopsis thaliana transferase, transferring glycosyl groups
            AT1G05670 mRNA, complete cds
          Length = 3560

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 443  actgattacatcaggtgtgt 462
            ||||||||||||||||||||
Sbjct: 2183 actgattacatcaggtgtgt 2164
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>gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, complete sequence
          Length = 168683

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   gtctttactcggggagtgtc 265
             ||||||||||||||||||||
Sbjct: 33895 gtctttactcggggagtgtc 33876
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>ref|XM_423797.1| PREDICTED: Gallus gallus similar to sodium bicarbonate transporter 4
            isoform b (LOC426127), mRNA
          Length = 3648

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 161  ttggatatcaagaggaagct 180
            ||||||||||||||||||||
Sbjct: 1459 ttggatatcaagaggaagct 1478
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>ref|XM_423758.1| PREDICTED: Gallus gallus similar to sodium bicarbonate transporter
           4 isoform a (LOC426081), partial mRNA
          Length = 1277

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 161 ttggatatcaagaggaagct 180
           ||||||||||||||||||||
Sbjct: 20  ttggatatcaagaggaagct 39
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>gb|AE006401.1| Lactococcus lactis subsp. lactis IL1403 section 163 of 218 of the
            complete genome
          Length = 11452

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 335  gctaaaattattgcacgaaa 354
            ||||||||||||||||||||
Sbjct: 2201 gctaaaattattgcacgaaa 2182
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>gb|AC145952.3| Pan troglodytes BAC clone RP43-18D16 from 7, complete sequence
          Length = 160354

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 256   ggggagtgtctgcatctggaacta 279
             |||| |||||||||||||||||||
Sbjct: 89729 ggggggtgtctgcatctggaacta 89752
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>gb|AY808633.1| Schistosoma japonicum SJCHGC04487 protein mRNA, partial cds
          Length = 820

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 tggtgaaatcatttgaagtc 313
           ||||||||||||||||||||
Sbjct: 578 tggtgaaatcatttgaagtc 559
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>gb|AC156273.7| Mus musculus 10 BAC RP24-275P22 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 200541

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   tgcatctggaactaccaaac 285
             ||||||||||||||||||||
Sbjct: 95916 tgcatctggaactaccaaac 95897
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>gb|AC131177.9| Mus musculus chromosome 1, clone RP23-374I10, complete sequence
          Length = 189761

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   gtctttactcggggagtgtc 265
             ||||||||||||||||||||
Sbjct: 10783 gtctttactcggggagtgtc 10802
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>gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 genomic sequence, complete
             sequence
          Length = 103223

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   actgattacatcaggtgtgt 462
             ||||||||||||||||||||
Sbjct: 81475 actgattacatcaggtgtgt 81494


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,785,977
Number of Sequences: 3902068
Number of extensions: 2785977
Number of successful extensions: 51399
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51246
Number of HSP's gapped (non-prelim): 152
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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