Clone Name | bastl39e01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_468998.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2706 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 365 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 424 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 42 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 101 Query: 425 cgaggacggtccggtgttctgcggcctcagctcgg 459 ||||||||| || ||||||||||| |||| ||||| Sbjct: 102 cgaggacggccccgtgttctgcgggctcaactcgg 136
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 365 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 424 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 24304453 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 24304512 Query: 425 cgaggacggtccggtgttctgcggcctcagctcgg 459 ||||||||| || ||||||||||| |||| ||||| Sbjct: 24304513 cgaggacggccccgtgttctgcgggctcaactcgg 24304547
>gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence Length = 171664 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Minus Query: 365 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 424 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 76171 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 76112 Query: 425 cgaggacggtccggtgttctgcggcctcagctcgg 459 ||||||||| || ||||||||||| |||| ||||| Sbjct: 76111 cgaggacggccccgtgttctgcgggctcaactcgg 76077
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 365 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 424 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 24221922 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 24221981 Query: 425 cgaggacggtccggtgttctgcggcctcagctcgg 459 ||||||||| || ||||||||||| |||| ||||| Sbjct: 24221982 cgaggacggccccgtgttctgcgggctcaactcgg 24222016
>dbj|AK101339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034J17, full insert sequence Length = 3772 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 365 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 424 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 718 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 777 Query: 425 cgaggacggtccggtgttctgcggcctcagctcgg 459 ||||||||| || ||||||||||| |||| ||||| Sbjct: 778 cgaggacggccccgtgttctgcgggctcaactcgg 812
>dbj|AB057787.1| Oryza sativa OsCR4 gene, complete cds Length = 3859 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 365 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 424 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 846 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 905 Query: 425 cgaggacggtccggtgttctgcggcctcagctcgg 459 ||||||||| || ||||||||||| |||| ||||| Sbjct: 906 cgaggacggccccgtgttctgcgggctcaactcgg 940
>gb|AY110360.1| Zea mays CL2011_1 mRNA sequence Length = 3324 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 376 gctgggcctatggcctcggctccatgggatccatctcggtgtcctacggcgaggacggtc 435 ||||||||| |||||| ||||||||| ||||| |||||||||| || ||||| |||| Sbjct: 215 gctgggcctgtggccttggctccatgtcgtccattgcggtgtcctatggggaggatggtc 274 Query: 436 cggtgttctgcggcctca 453 |||||||||| ||||||| Sbjct: 275 cggtgttctgtggcctca 292
>gb|U67422.1|ZMU67422 Zea mays CRINKLY4 precursor (cr4) mRNA, complete cds Length = 3346 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 376 gctgggcctatggcctcggctccatgggatccatctcggtgtcctacggcgaggacggtc 435 ||||||||| |||||| ||||||||| ||||| |||||||||| || ||||| |||| Sbjct: 215 gctgggcctgtggccttggctccatgtcgtccattgcggtgtcctatggggaggatggtc 274 Query: 436 cggtgttctgcggcctca 453 |||||||||| ||||||| Sbjct: 275 cggtgttctgtggcctca 292
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 58 ctctacctcgccgcctccgccgc 80 ||||||||||||||||||||||| Sbjct: 2515244 ctctacctcgccgcctccgccgc 2515222
>ref|XM_468447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1719 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 cctcgccgcctccgccgcgct 83 ||||||||||||||||||||| Sbjct: 546 cctcgccgcctccgccgcgct 566
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 cctcgccgcctccgccgcgct 83 ||||||||||||||||||||| Sbjct: 4550220 cctcgccgcctccgccgcgct 4550240
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 cctcgccgcctccgccgcgct 83 ||||||||||||||||||||| Sbjct: 35286777 cctcgccgcctccgccgcgct 35286797
>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1119_A01 Length = 108727 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 cctcgccgcctccgccgcgct 83 ||||||||||||||||||||| Sbjct: 37111 cctcgccgcctccgccgcgct 37131
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 cctcgccgcctccgccgcgct 83 ||||||||||||||||||||| Sbjct: 98827 cctcgccgcctccgccgcgct 98847
>dbj|AK109819.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-A04, full insert sequence Length = 1928 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 cctcgccgcctccgccgcgct 83 ||||||||||||||||||||| Sbjct: 119 cctcgccgcctccgccgcgct 139
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 cctcgccgcctccgccgcgct 83 ||||||||||||||||||||| Sbjct: 4550201 cctcgccgcctccgccgcgct 4550221
>emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa0002O20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 129155 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 cctcgccgcctccgccgcgct 83 ||||||||||||||||||||| Sbjct: 54558 cctcgccgcctccgccgcgct 54538
>gb|AC101948.10| Mus musculus chromosome 15, clone RP24-139K14, complete sequence Length = 182534 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 cctcagtcctctccactccc 56 |||||||||||||||||||| Sbjct: 120786 cctcagtcctctccactccc 120767
>gb|BT013231.1| Lycopersicon esculentum clone 134477R, mRNA sequence Length = 1652 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 ccgccgcgcttgttcctcccaacc 97 |||||||||| ||||||||||||| Sbjct: 677 ccgccgcgctagttcctcccaacc 654
>gb|AC158776.5| Mus musculus chromosome 15, clone RP23-261G10, complete sequence Length = 192769 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 cctcagtcctctccactccc 56 |||||||||||||||||||| Sbjct: 173326 cctcagtcctctccactccc 173307
>ref|XM_747609.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g13320) partial mRNA Length = 1131 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 tatggcctcggctccatggg 403 |||||||||||||||||||| Sbjct: 199 tatggcctcggctccatggg 218
>gb|AC091744.5| Homo sapiens BAC clone RP11-372I24 from 7, complete sequence Length = 23032 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 ctcctctccgcactgccctc 198 |||||||||||||||||||| Sbjct: 10046 ctcctctccgcactgccctc 10027
>gb|AC158567.3| Mus musculus chromosome 15, clone RP24-93F2, complete sequence Length = 188718 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 cctcagtcctctccactccc 56 |||||||||||||||||||| Sbjct: 97946 cctcagtcctctccactccc 97927
>gb|AC090894.10| Homo sapiens chromosome 17, clone RP11-744K17, complete sequence Length = 150680 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 agtcctcagtcctctccactcccc 57 |||||||||||| ||||||||||| Sbjct: 141174 agtcctcagtcccctccactcccc 141197
>emb|BX649606.1| Aspergillus fumigatus BAC pilot project supercontig; segment 2/3 Length = 348551 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 tatggcctcggctccatggg 403 |||||||||||||||||||| Sbjct: 243684 tatggcctcggctccatggg 243665
>gb|BC040673.1| Homo sapiens cDNA clone IMAGE:4817003 Length = 1809 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 agtcctctccactccccctc 60 |||||||||||||||||||| Sbjct: 958 agtcctctccactccccctc 977
>gb|AC027449.6| Homo sapiens chromosome 18, clone RP11-535A5, complete sequence Length = 149660 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 40 cagtcctctccactccccctctacctcg 67 ||||||||||||||||| ||||| |||| Sbjct: 52577 cagtcctctccactccctctctagctcg 52604
>gb|AC026583.10| Homo sapiens chromosome 15, clone RP11-20C17, complete sequence Length = 175472 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 tcctctccgcactgccctccctcg 203 |||||||| ||||||||||||||| Sbjct: 157553 tcctctcctcactgccctccctcg 157576
>gb|U21310.1| Caenorhabditis elegans cosmid F40H6, complete sequence Length = 32481 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tcagtcctctccactccccc 58 |||||||||||||||||||| Sbjct: 25678 tcagtcctctccactccccc 25697
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 cctctacctcgccgcctccgccgc 80 |||| ||||||||||||||||||| Sbjct: 14988242 cctccacctcgccgcctccgccgc 14988219
>gb|AC024361.21| Homo sapiens chromosome 17, clone RP11-388C12, complete sequence Length = 111473 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 agtcctctccactccccctc 60 |||||||||||||||||||| Sbjct: 973 agtcctctccactccccctc 992
>gb|AC124283.11| Homo sapiens chromosome 17, clone RP13-638C3, complete sequence Length = 143744 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 agtcctctccactccccctc 60 |||||||||||||||||||| Sbjct: 140203 agtcctctccactccccctc 140222
>gb|AC011648.12| Homo sapiens chromosome 15, clone RP11-15F13, complete sequence Length = 107336 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 180 tcctctccgcactgccctccctcg 203 |||||||| ||||||||||||||| Sbjct: 98945 tcctctcctcactgccctccctcg 98922
>gb|AC151756.2| Ornithorhynchus anatinus chromosome UNK clone OABb-466P24, complete sequence Length = 156508 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 tcctctccactccccctctacctc 66 ||||||||||||||||||| |||| Sbjct: 89071 tcctctccactccccctctccctc 89048
>dbj|AP005429.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0701F11 Length = 154950 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 cctctacctcgccgcctccgccgc 80 |||| ||||||||||||||||||| Sbjct: 57688 cctccacctcgccgcctccgccgc 57665
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 416 gtcctacggcgaggacggtccggt 439 ||||| |||||||||||||||||| Sbjct: 27812 gtccttcggcgaggacggtccggt 27835
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 416 gtcctacggcgaggacggtccggt 439 ||||| |||||||||||||||||| Sbjct: 27812 gtccttcggcgaggacggtccggt 27835
>gb|AC087575.11| Homo sapiens chromosome 17, clone RP11-305L6, complete sequence Length = 198756 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 agtcctcagtcctctccactcccc 57 |||||||||||| ||||||||||| Sbjct: 47583 agtcctcagtcccctccactcccc 47606 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,486,367 Number of Sequences: 3902068 Number of extensions: 2486367 Number of successful extensions: 54977 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54533 Number of HSP's gapped (non-prelim): 444 length of query: 459 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 437 effective length of database: 17,147,199,772 effective search space: 7493326300364 effective search space used: 7493326300364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)