No.
Definition
Score (bits)
E Value
1 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
137
4e-29
2 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
137
4e-29
3 gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome...
137
4e-29
4 emb|AL392085.12| Human DNA sequence from clone RP11-225L6 on chr...
46
0.10
5 gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl...
42
1.6
6 ref|NM_185185.1| Oryza sativa (japonica cultivar-group), mRNA
40
6.3
7 ref|XM_366229.1| Magnaporthe grisea 70-15 hypothetical protein (...
40
6.3
8 gb|BC054369.1| Mus musculus mitogen-activated protein kinase kin...
40
6.3
9 ref|XM_598189.2| PREDICTED: Bos taurus similar to Mitogen-activa...
40
6.3
10 gb|AC140267.2| Mus musculus BAC clone RP24-303O5 from chromosome...
40
6.3
11 gb|AC161199.4| Mus musculus chromosome 15, clone RP23-383D13, co...
40
6.3
12 emb|AL954201.1| Pan troglodytes chromosome 22 clone PTB-118B22 m...
40
6.3
13 emb|AL954200.2| Pan troglodytes chromosome 22 clone PTB-419O23 m...
40
6.3
14 ref|XM_844692.1| PREDICTED: Canis familiaris similar to Mitogen-...
40
6.3
15 ref|XM_538366.2| PREDICTED: Canis familiaris similar to Mitogen-...
40
6.3
16 emb|BX842646.1| Bdellovibrio bacteriovorus complete genome, stra...
40
6.3
17 gb|AC010664.7| Drosophila melanogaster 3L BAC RP98-2G4 (Roswell ...
40
6.3
18 gb|AC104247.5| Homo sapiens chromosome 8, clone RP11-1077K19, co...
40
6.3
19 gb|AC112727.4| Drosophila melanogaster 3L BAC RP98-15L14 (Roswel...
40
6.3
20 gb|AC109632.4| Homo sapiens chromosome 8, clone RP11-46A19, comp...
40
6.3
21 dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ...
40
6.3
22 gb|BC041110.1| Mus musculus mitogen-activated protein kinase kin...
40
6.3
23 gb|BC027054.1| Mus musculus mitogen-activated protein kinase kin...
40
6.3
24 gb|AC148702.1| Macaca mulatta Major Histocompatibility Complex B...
40
6.3
25 dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partia...
40
6.3
26 gb|AC068121.8| Homo sapiens BAC clone RP11-181P21 from 2, comple...
40
6.3
27 gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genom...
40
6.3
28 gb|AE003483.4| Drosophila melanogaster chromosome 3L, section 17...
40
6.3
29 dbj|AP001712.1| Homo sapiens genomic DNA, chromosome 21q, sectio...
40
6.3
30 gb|AC116406.13| Mus musculus chromosome 3, clone RP23-427K12, co...
40
6.3
31 ref|NM_025609.2| Mus musculus mitogen-activated protein kinase k...
40
6.3
32 gb|AF034767.1|AF034767 Pseudomonas putida DMS 0638 flagellin gen...
40
6.3
33 dbj|AB088136.1| Mus musculus tab1 mRNA for TAK1 binding protein-...
40
6.3
34 dbj|AP000256.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2...
40
6.3
35 dbj|AP000174.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2...
40
6.3
36 dbj|AP003788.1| Homo sapiens genomic DNA, chromosome 8q23, clone...
40
6.3
37 dbj|AP000098.1| Homo sapiens genomic DNA of 21q22.1, GART and AM...
40
6.3
>gb|DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 137 bits (69), Expect = 4e-29
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 141 tctgttctccgagcgttaatggatcagtggcagaactcaccgccgacgtggggacagtcc 200
||||||||||| ||||| |||||||||||||||||| | ||||| |||||||| |||||
Sbjct: 12091750 tctgttctccgcgcgttgatggatcagtggcagaacgcgccgccaacgtgggggcagtct 12091809
Query: 201 gacgatccctgcggtgattcgccatgggacggagtgatatgcagcaacaacagggtgatc 260
||||| || ||| | |||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct: 12091810 gacgacccatgcagcgattcgccatgggatggagtggtatgcagcaacaacagagtgatc 12091869
Query: 261 tccat 265
|||||
Sbjct: 12091870 tccat 12091874
Score = 77.8 bits (39), Expect = 3e-11
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 276 accatgggcatcaagggagttctggctgctgacatcggccagttgaccgagctgcaatcc 335
||||||||||||||||||||||| ||||||||||| || || |||||||||| ||||||
Sbjct: 12091971 accatgggcatcaagggagttctagctgctgacatagggcaactgaccgagcttcaatcc 12092030
Query: 336 ctg 338
|||
Sbjct: 12092031 ctg 12092033
Score = 67.9 bits (34), Expect = 3e-08
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 413 gattctggcagggtgcagctttcatggcaacatccctgatgagctagggagtct 466
||||||||| || ||||| || |||||||||||||| |||||||||||||||||
Sbjct: 12092290 gattctggccggttgcagtttccatggcaacatcccggatgagctagggagtct 12092343
Score = 60.0 bits (30), Expect = 7e-06
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 85 tgctgctctgggtgtgcgtgcgagcaagccatggagtcacggacagccaggaca 138
||||||||| ||||||||| ||||||||||||| || ||||| ||||||||||
Sbjct: 12091417 tgctgctctcggtgtgcgtccgagcaagccatgccgtgacggatagccaggaca 12091470
Score = 48.1 bits (24), Expect = 0.026
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 354 aaggaccttggaggtgtgctcactccgacaatcggtaacttgaagcagcttgcaaccttg 413
||||| ||||| || ||||||||||| | ||||| ||||||||||||||| | ||||||
Sbjct: 12092153 aaggatcttggcggcgtgctcactccaaacatcggaaacttgaagcagcttaccaccttg 12092212
Score = 40.1 bits (20), Expect = 6.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 84 ttgctgctctgggtgtgcgt 103
||||||||||||||||||||
Sbjct: 35411217 ttgctgctctgggtgtgcgt 35411198
>dbj|AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 137 bits (69), Expect = 4e-29
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 141 tctgttctccgagcgttaatggatcagtggcagaactcaccgccgacgtggggacagtcc 200
||||||||||| ||||| |||||||||||||||||| | ||||| |||||||| |||||
Sbjct: 12088513 tctgttctccgcgcgttgatggatcagtggcagaacgcgccgccaacgtgggggcagtct 12088572
Query: 201 gacgatccctgcggtgattcgccatgggacggagtgatatgcagcaacaacagggtgatc 260
||||| || ||| | |||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct: 12088573 gacgacccatgcagcgattcgccatgggatggagtggtatgcagcaacaacagagtgatc 12088632
Query: 261 tccat 265
|||||
Sbjct: 12088633 tccat 12088637
Score = 77.8 bits (39), Expect = 3e-11
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 276 accatgggcatcaagggagttctggctgctgacatcggccagttgaccgagctgcaatcc 335
||||||||||||||||||||||| ||||||||||| || || |||||||||| ||||||
Sbjct: 12088734 accatgggcatcaagggagttctagctgctgacatagggcaactgaccgagcttcaatcc 12088793
Query: 336 ctg 338
|||
Sbjct: 12088794 ctg 12088796
Score = 67.9 bits (34), Expect = 3e-08
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 413 gattctggcagggtgcagctttcatggcaacatccctgatgagctagggagtct 466
||||||||| || ||||| || |||||||||||||| |||||||||||||||||
Sbjct: 12089053 gattctggccggttgcagtttccatggcaacatcccggatgagctagggagtct 12089106
Score = 60.0 bits (30), Expect = 7e-06
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 85 tgctgctctgggtgtgcgtgcgagcaagccatggagtcacggacagccaggaca 138
||||||||| ||||||||| ||||||||||||| || ||||| ||||||||||
Sbjct: 12088180 tgctgctctcggtgtgcgtccgagcaagccatgccgtgacggatagccaggaca 12088233
Score = 48.1 bits (24), Expect = 0.026
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 354 aaggaccttggaggtgtgctcactccgacaatcggtaacttgaagcagcttgcaaccttg 413
||||| ||||| || ||||||||||| | ||||| ||||||||||||||| | ||||||
Sbjct: 12088916 aaggatcttggcggcgtgctcactccaaacatcggaaacttgaagcagcttaccaccttg 12088975
Score = 40.1 bits (20), Expect = 6.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 84 ttgctgctctgggtgtgcgt 103
||||||||||||||||||||
Sbjct: 35501289 ttgctgctctgggtgtgcgt 35501270
>gb|AC137547.2 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20,
complete sequence
Length = 144969
Score = 137 bits (69), Expect = 4e-29
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 141 tctgttctccgagcgttaatggatcagtggcagaactcaccgccgacgtggggacagtcc 200
||||||||||| ||||| |||||||||||||||||| | ||||| |||||||| |||||
Sbjct: 112330 tctgttctccgcgcgttgatggatcagtggcagaacgcgccgccaacgtgggggcagtct 112389
Query: 201 gacgatccctgcggtgattcgccatgggacggagtgatatgcagcaacaacagggtgatc 260
||||| || ||| | |||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct: 112390 gacgacccatgcagcgattcgccatgggatggagtggtatgcagcaacaacagagtgatc 112449
Query: 261 tccat 265
|||||
Sbjct: 112450 tccat 112454
Score = 77.8 bits (39), Expect = 3e-11
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 276 accatgggcatcaagggagttctggctgctgacatcggccagttgaccgagctgcaatcc 335
||||||||||||||||||||||| ||||||||||| || || |||||||||| ||||||
Sbjct: 112551 accatgggcatcaagggagttctagctgctgacatagggcaactgaccgagcttcaatcc 112610
Query: 336 ctg 338
|||
Sbjct: 112611 ctg 112613
Score = 67.9 bits (34), Expect = 3e-08
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 413 gattctggcagggtgcagctttcatggcaacatccctgatgagctagggagtct 466
||||||||| || ||||| || |||||||||||||| |||||||||||||||||
Sbjct: 112870 gattctggccggttgcagtttccatggcaacatcccggatgagctagggagtct 112923
Score = 60.0 bits (30), Expect = 7e-06
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 85 tgctgctctgggtgtgcgtgcgagcaagccatggagtcacggacagccaggaca 138
||||||||| ||||||||| ||||||||||||| || ||||| ||||||||||
Sbjct: 111997 tgctgctctcggtgtgcgtccgagcaagccatgccgtgacggatagccaggaca 112050
Score = 48.1 bits (24), Expect = 0.026
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 354 aaggaccttggaggtgtgctcactccgacaatcggtaacttgaagcagcttgcaaccttg 413
||||| ||||| || ||||||||||| | ||||| ||||||||||||||| | ||||||
Sbjct: 112733 aaggatcttggcggcgtgctcactccaaacatcggaaacttgaagcagcttaccaccttg 112792
>dbj|AP000174.1 | Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
Q78C10-f32E9, segment 1/21, complete sequence
Length = 100000
Score = 40.1 bits (20), Expect = 6.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 ccttgctgctctgggtgtgc 101
||||||||||||||||||||
Sbjct: 14847 ccttgctgctctgggtgtgc 14866
>dbj|AP000098.1 | Homo sapiens genomic DNA of 21q22.1, GART and AML related,
Q78C10-149C3 region, segment 1/20
Length = 100000
Score = 40.1 bits (20), Expect = 6.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 ccttgctgctctgggtgtgc 101
||||||||||||||||||||
Sbjct: 14847 ccttgctgctctgggtgtgc 14866
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,377,058
Number of Sequences: 3902068
Number of extensions: 3377058
Number of successful extensions: 55167
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54969
Number of HSP's gapped (non-prelim): 198
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)