ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl39d09 |
|---|---|
| Clone Library Name | barley_pub |
>XPB1_ARATH (Q38861) DNA repair helicase XPB1 (EC 3.6.1.-) (XPB homolog 1)| (ERCC3 homolog 1) (RAD25 homolog 1) (AtXPB1) (Protein araXPB) Length = 767 Score = 152 bits (384), Expect = 4e-37 Identities = 73/78 (93%), Positives = 74/78 (94%) Frame = +3 Query: 243 EVKKRDFTKLELKPDHVNRPPWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHE 422 E KKRDFTKLELKPDH NRP WACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHE Sbjct: 46 EEKKRDFTKLELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHE 105 Query: 423 IHLTPHSLYAAVSVGLET 476 +LTPHSLYAAVSVGLET Sbjct: 106 YNLTPHSLYAAVSVGLET 123
>XPB2_ARATH (Q9FUG4) DNA repair helicase XPB2 (EC 3.6.1.-) (XPB homolog 2)| (ERCC3 homolog 2) (RAD25 homolog 2) (AtXPB2) Length = 766 Score = 147 bits (372), Expect = 1e-35 Identities = 70/78 (89%), Positives = 73/78 (93%) Frame = +3 Query: 243 EVKKRDFTKLELKPDHVNRPPWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHE 422 E K+RDFT LELKPDH NRP WACADG+IFLETFSPLYKQAYDFLIAIAEPVCRPESMHE Sbjct: 46 EEKRRDFTDLELKPDHGNRPLWACADGKIFLETFSPLYKQAYDFLIAIAEPVCRPESMHE 105 Query: 423 IHLTPHSLYAAVSVGLET 476 +LTPHSLYAAVSVGLET Sbjct: 106 YNLTPHSLYAAVSVGLET 123
>ERCC3_DROME (Q02870) DNA excision repair protein haywire (EC 3.6.1.-)| (ATP-dependent DNA helicase hay) (ERCC-3 homolog protein) Length = 798 Score = 105 bits (262), Expect = 6e-23 Identities = 48/80 (60%), Positives = 65/80 (81%), Gaps = 1/80 (1%) Frame = +3 Query: 240 NEVKKRDF-TKLELKPDHVNRPPWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESM 416 +E +D+ ++++L+PDH NRP W +G +FLE+FSP+YK A+DFLIAI+EPVCRPE + Sbjct: 64 DEYGAKDYRSQMQLRPDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHI 123 Query: 417 HEIHLTPHSLYAAVSVGLET 476 HE LT +SLYAAVSVGL+T Sbjct: 124 HEYKLTAYSLYAAVSVGLQT 143
>ERCC3_MACFA (Q60HG1) TFIIH basal transcription factor complex helicase XPB| subunit (EC 3.6.1.-) (Basic transcription factor 2 89 kDa subunit) (BTF2-p89) (TFIIH 89 kDa subunit) (DNA-repair protein complementing XP-B cells) (Xeroderma pigmentosum group B-c Length = 782 Score = 100 bits (248), Expect = 3e-21 Identities = 46/71 (64%), Positives = 55/71 (77%) Frame = +3 Query: 267 KLELKPDHVNRPPWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEIHLTPHSL 446 ++ LK DH +RP W DG IFLE FSP+YK A DFL+AIAEPVCRP +HE LT +SL Sbjct: 64 QMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSL 123 Query: 447 YAAVSVGLETT 479 YAAVSVGL+T+ Sbjct: 124 YAAVSVGLQTS 134
>ERCC3_HUMAN (P19447) TFIIH basal transcription factor complex helicase XPB| subunit (EC 3.6.1.-) (Basic transcription factor 2 89 kDa subunit) (BTF2-p89) (TFIIH 89 kDa subunit) (DNA-repair protein complementing XP-B cells) (Xeroderma pigmentosum group B c Length = 782 Score = 100 bits (248), Expect = 3e-21 Identities = 46/71 (64%), Positives = 55/71 (77%) Frame = +3 Query: 267 KLELKPDHVNRPPWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEIHLTPHSL 446 ++ LK DH +RP W DG IFLE FSP+YK A DFL+AIAEPVCRP +HE LT +SL Sbjct: 64 QMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSL 123 Query: 447 YAAVSVGLETT 479 YAAVSVGL+T+ Sbjct: 124 YAAVSVGLQTS 134
>ERCC3_MOUSE (P49135) TFIIH basal transcription factor complex helicase XPB| subunit (EC 3.6.1.-) (Basic transcription factor 2 89 kDa subunit) (BTF2-p89) (TFIIH 89 kDa subunit) (DNA-repair protein complementing XP-B cells) (Xeroderma pigmentosum group B c Length = 783 Score = 99.8 bits (247), Expect = 3e-21 Identities = 46/71 (64%), Positives = 55/71 (77%) Frame = +3 Query: 267 KLELKPDHVNRPPWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEIHLTPHSL 446 ++ LK DH +RP W DG IFLE FSP+YK A DFL+AIAEPVCRP +HE LT +SL Sbjct: 64 QMPLKGDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSL 123 Query: 447 YAAVSVGLETT 479 YAAVSVGL+T+ Sbjct: 124 YAAVSVGLQTS 134
>RAD25_YEAST (Q00578) DNA repair helicase RAD25 (EC 3.6.1.-) (General| transcription and DNA repair factor IIH subunit RAD25) (TFIIH subunit RAD25) Length = 843 Score = 96.3 bits (238), Expect = 4e-20 Identities = 46/77 (59%), Positives = 58/77 (75%), Gaps = 1/77 (1%) Frame = +3 Query: 249 KKRDFTKLELKPDHVNRPPWAC-ADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEI 425 + DF+ L L+PDH +RP W +DGRI LE+FSPL +QA DFL+ IAEP+ RP +HE Sbjct: 114 RSHDFSYLRLRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIHEY 173 Query: 426 HLTPHSLYAAVSVGLET 476 +T +SLYAAVSVGLET Sbjct: 174 KITAYSLYAAVSVGLET 190
>ERCC3_SCHPO (O13768) Probable DNA repair helicase ercc3 (EC 3.6.1.-)| Length = 804 Score = 82.8 bits (203), Expect = 4e-16 Identities = 45/77 (58%), Positives = 54/77 (70%), Gaps = 2/77 (2%) Frame = +3 Query: 252 KRDFTKL-ELKPDHVNRPPWACA-DGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEI 425 + DF+ L LK DH RP W DGRI LE FSPL +QA DFL+ I+EPV RP +HE Sbjct: 73 QNDFSNLLGLKLDHTARPLWINPIDGRIILEAFSPLAEQAIDFLVTISEPVSRPAFIHEY 132 Query: 426 HLTPHSLYAAVSVGLET 476 +T +SLYAAVSVGL+T Sbjct: 133 RITAYSLYAAVSVGLKT 149
>TR19L_HUMAN (Q969Z4) Tumor necrosis factor receptor superfamily member 19L| precursor (Receptor expressed in lymphoid tissues) Length = 430 Score = 28.9 bits (63), Expect = 7.3 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -2 Query: 404 PAYRFGDGNEEIVGLLVKRREGLEEDAAVCARPRRPVH 291 PAYR D NE+ +G+LV+ +E+AA + H Sbjct: 212 PAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYH 249
>TR19L_MOUSE (Q8BX43) Tumor necrosis factor receptor superfamily member 19L| precursor Length = 436 Score = 28.9 bits (63), Expect = 7.3 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -2 Query: 404 PAYRFGDGNEEIVGLLVKRREGLEEDAAVCARPRRPVH 291 PAYR D NE+ +G+LV+ +E+AA + H Sbjct: 219 PAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYH 256 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,416,670 Number of Sequences: 219361 Number of extensions: 845700 Number of successful extensions: 2316 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2277 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2315 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
