>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3|
          Length = 981

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = -2

Query: 355 RVPHHQLLISRYHSLVL-----TRSRPHPPQSHCLPVPKN 251
           +V HHQLL+ +    +      + S+  PP  HC+P+P +
Sbjct: 316 KVSHHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNH 355

>MCM7_XENLA (Q91876) DNA replication licensing factor MCM7 (CDC47 homolog)|
           (x.MCM7)
          Length = 720

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +1

Query: 145 NSPFSAGSEPHPLHGRDSSLKTVEGNLQAAAAMASRF 255
           N+  S  +  +P +GR +  KTVE N+Q  AA+ SRF
Sbjct: 478 NARCSILAAANPAYGRYNPKKTVEQNIQLPAALLSRF 514

>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3|
          Length = 1333

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 340  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 239
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2|
          Length = 1333

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 340  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 239
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1|
          Length = 1333

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 340  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 239
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>SYH_PORPU (P51348) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 430

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +2

Query: 206 RQLKVIYKQQQPWRLVFGD----RETVTLRRMWTRSSQNKGVIARNQKL 340
           +QLK  +K++    L+ GD    +ET+T++ M+T+  +N  +I    K+
Sbjct: 366 KQLKQAHKKRAIACLILGDNEIQQETITIKWMYTQEQENMSIIEFKNKI 414

>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 16/48 (33%)
 Frame = -2

Query: 349 PHHQLLISRY------HSLVLTRSRPHPPQS----------HCLPVPK 254
           PH  L +S+       HSL++TR  PH P S          +CLP+P+
Sbjct: 227 PHLNLSVSKLESWGPVHSLLITRGLPHLPSSEKQQVSFHIPNCLPLPE 274

>HEMA_CVMA5 (P31615) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3|
           glycoprotein)
          Length = 428

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 257 QKRDAMAAAACKLPSTVFKLESRPWSG*GSDPAENGE 147
           ++ D M AAAC+LP   F+  S  +SG G+  A +G+
Sbjct: 309 RQSDNMTAAACQLPYCFFRNTSANYSG-GTHDAHHGD 344

>PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog of|
           polyhomeotic 3) (Early development regulatory protein 3)
          Length = 983

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -2

Query: 355 RVPHHQLLISRYHS----LVLTRSRPHPPQS-HCLPVPKNETP 242
           +V HHQL++ +       + L  S   PP S HC+P+  +  P
Sbjct: 319 KVSHHQLILQQQQQQIQPITLQNSTQDPPPSQHCIPLQNHGLP 361

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 24.3 bits (51), Expect(2) = 6.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 86  HPRPLSAAERAAAPVYSAAPILRSP 160
           HP P + A+    P+YS +P ++ P
Sbjct: 177 HPPPPTYAQPPPTPIYSPSPQVQPP 201



 Score = 21.9 bits (45), Expect(2) = 6.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 61  TPPVPQHPPS 90
           TPP  QHPPS
Sbjct: 156 TPPRGQHPPS 165

>ZN161_HUMAN (Q14119) Zinc finger protein 161 (Putative transcription factor|
           DB1)
          Length = 516

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 361 AHRVPHHQLLISRYHSLVLTRSRPHPP-QSHCLPVPKNETP 242
           AH   HHQ   ++   L L  S   PP Q   LP+P  + P
Sbjct: 12  AHEASHHQQQAAQNSLLPLLSSAVEPPDQKPLLPIPITQKP 52

>PALH_NEUCR (Q7RY98) pH-response regulator protein palH/rim-21|
          Length = 778

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 313 GSDSEKSEAGDGGRDG 360
           GSDS+ +E+G GG+DG
Sbjct: 411 GSDSQDTESGGGGKDG 426


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.305    0.125    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,448,172
Number of Sequences: 219361
Number of extensions: 685212
Number of successful extensions: 1276
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)