ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl39d06 |
|---|---|
| Clone Library Name | barley_pub |
>REL_HUMAN (Q04864) C-Rel proto-oncogene protein (C-Rel protein)| Length = 619 Score = 34.3 bits (77), Expect = 0.14 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%) Frame = +2 Query: 101 LPSSSWTSLAD*SPNSPQIPPLS----REIPNLAHGRRPWCRAP 220 LPSSSW+S+A +P S PLS R +P+ + G P+ R P Sbjct: 407 LPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNSQGIPPFLRIP 450
>SGS4_DROME (Q00725) Salivary glue protein Sgs-4 precursor| Length = 297 Score = 33.5 bits (75), Expect = 0.25 Identities = 23/80 (28%), Positives = 28/80 (35%) Frame = +2 Query: 5 DTHPPQVRWMPCCC*AQAFNCLARNCVPKYRRLPSSSWTSLAD*SPNSPQIPPLSREIPN 184 +T PP+ P C + C PK P + T P PP R P Sbjct: 39 ETEPPRCETEPPRCETEPPRC--ETTTPKCETTPPTCRTE----PPTCKTEPPTCRTEPP 92 Query: 185 LAHGRRPWCRAPTPTCLTWP 244 + P CR PTC T P Sbjct: 93 TCKTKPPTCRTEPPTCRTEP 112 Score = 31.2 bits (69), Expect = 1.2 Identities = 23/79 (29%), Positives = 27/79 (34%) Frame = +2 Query: 8 THPPQVRWMPCCC*AQAFNCLARNCVPKYRRLPSSSWTSLAD*SPNSPQIPPLSREIPNL 187 T PP + P C + C R P + P + T P PP R P Sbjct: 89 TEPPTCKTKPPTCRTEPPTC--RTEPPTCKTKPPTCKTE----PPTCKTEPPTCRTEPPT 142 Query: 188 AHGRRPWCRAPTPTCLTWP 244 P CR PTC T P Sbjct: 143 CKTEPPTCRTEPPTCKTEP 161 Score = 29.6 bits (65), Expect = 3.5 Identities = 22/79 (27%), Positives = 27/79 (34%) Frame = +2 Query: 8 THPPQVRWMPCCC*AQAFNCLARNCVPKYRRLPSSSWTSLAD*SPNSPQIPPLSREIPNL 187 T PP+ P C + C P+ P T+ +P PP R P Sbjct: 26 TEPPRCETEPPRCETEPPRCETEP--PRCETEPPRCETT----TPKCETTPPTCRTEPPT 79 Query: 188 AHGRRPWCRAPTPTCLTWP 244 P CR PTC T P Sbjct: 80 CKTEPPTCRTEPPTCKTKP 98 Score = 28.9 bits (63), Expect = 6.0 Identities = 22/79 (27%), Positives = 26/79 (32%) Frame = +2 Query: 8 THPPQVRWMPCCC*AQAFNCLARNCVPKYRRLPSSSWTSLAD*SPNSPQIPPLSREIPNL 187 T PP R P C + C P + P + T P PP R P Sbjct: 103 TEPPTCRTEPPTCKTKPPTCKTEP--PTCKTEPPTCRTE----PPTCKTEPPTCRTEPPT 156 Query: 188 AHGRRPWCRAPTPTCLTWP 244 P C+ PTC T P Sbjct: 157 CKTEPPTCKTEPPTCKTEP 175
>RS14_RAT (P13471) 40S ribosomal protein S14| Length = 150 Score = 32.0 bits (71), Expect = 0.71 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>RS14_MOUSE (P62264) 40S ribosomal protein S14| Length = 150 Score = 32.0 bits (71), Expect = 0.71 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>RS14_HUMAN (P62263) 40S ribosomal protein S14| Length = 150 Score = 32.0 bits (71), Expect = 0.71 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>RS14_CRIGR (P62265) 40S ribosomal protein S14| Length = 150 Score = 32.0 bits (71), Expect = 0.71 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>HIS42_SILPO (Q5LR59) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2 (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 2) Length = 247 Score = 31.6 bits (70), Expect = 0.93 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -3 Query: 112 GRREAPIFWHTVPGETVEGLGSAATR--HPPDL 20 GR +AP+ WH P ETV G SA H DL Sbjct: 20 GRLDAPMLWHVDPFETVSGWASAGAEWMHLTDL 52
>RS14_KLULA (P27069) 40S ribosomal protein S14 (RP59)| Length = 137 Score = 31.2 bits (69), Expect = 1.2 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +RS TP P + +R AR G +GRI S S R GGRR Sbjct: 87 GGTRSKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 133
>KGUA_ACIAD (Q6F7H0) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 207 Score = 30.8 bits (68), Expect = 1.6 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -2 Query: 197 SREQDSGFREKGEGFGENWGFNQRAKSRRKKGGADILAHSSWR 69 S+ +D+GF E E FG +G +Q ++ G D+L W+ Sbjct: 61 SQVEDNGFIEYAEVFGNYYGTSQATVKQQLAKGHDVLLEIDWQ 103
>RS14_CHLRE (P46295) 40S ribosomal protein S14| Length = 153 Score = 30.4 bits (67), Expect = 2.1 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +R+ TP P S +R AR G +GRI + S R GGRR Sbjct: 103 GGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDSTRRKGGRR 149
>RS14B_YEAST (P39516) 40S ribosomal protein S14-B (RP59B)| Length = 137 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +R+ TP P + +R AR G +GRI S S R GGRR Sbjct: 87 GGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 133
>RS14A_YEAST (P06367) 40S ribosomal protein S14-A (RP59A)| Length = 136 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +R+ TP P + +R AR G +GRI S S R GGRR Sbjct: 86 GGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 132
>RS14_PROCL (P48855) 40S ribosomal protein S14| Length = 151 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +++ TP P S +R AR G +GRI S S R GGRR Sbjct: 101 GGNKTKTPGPGGQSALRALARAGMKIGRIEDVTPVPSDSTRRKGGRR 147
>RS14_PODCA (Q08699) 40S ribosomal protein S14| Length = 151 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +R+ TP P S +R AR G +GRI S R GGRR Sbjct: 101 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCTRRKGGRR 147
>RS141_MAIZE (P19950) 40S ribosomal protein S14 (Clone MCH1)| Length = 149 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 99 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRR 145
>RS143_ARATH (P42036) 40S ribosomal protein S14-3| Length = 150 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146
>RS142_MAIZE (P19951) 40S ribosomal protein S14 (Clone MCH2)| Length = 150 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRR 146
>RS142_ARATH (Q9CAX6) 40S ribosomal protein S14-2| Length = 150 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146
>RS141_ARATH (Q9SIH0) 40S ribosomal protein S14-1| Length = 150 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146
>RS14_CAEEL (P48150) 40S ribosomal protein S14| Length = 152 Score = 29.6 bits (65), Expect = 3.5 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +R+ TP P S +R AR G +GRI S R GGRR Sbjct: 102 GGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCTRRKGGRR 148
>RS14_CANAL (Q96W53) 40S ribosomal protein S14| Length = 134 Score = 29.6 bits (65), Expect = 3.5 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +++ TP P S +R AR G +GRI S S R GGRR Sbjct: 84 GGTKTKTPGPGGQSALRALARSGLRIGRIEDVTPVPSDSTRRKGGRR 130
>ATXR3_ARATH (O23372) Probable histone-lysine N-methyltransferase ATXR3 (EC| 2.1.1.43) (Trithorax-related protein 3) (TRX-related protein 3) (Protein SET DOMAIN GROUP 2) Length = 2351 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = -2 Query: 170 EKGEGFGENWGFNQRAKSRRK-KGGADILAHSSWRD 66 EKGE GE+W ++ K+ + KGG + SWRD Sbjct: 174 EKGEIVGESWKKDEPTKADKNWKGGKEEREFRSWRD 209
>RS14_NEUCR (P19115) 40S ribosomal protein S14 (CRP2)| Length = 150 Score = 28.9 bits (63), Expect = 6.0 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRI-----GASISERSPGGRR 104 G + + TP P S +R AR G +GRI S S R GGRR Sbjct: 100 GGNGTRTPGPGAQSALRALARSGMKIGRIEDVTPTPSDSTRRKGGRR 146
>TRAM4_ECOLI (Q00186) Protein traM| Length = 144 Score = 28.5 bits (62), Expect = 7.9 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -2 Query: 212 DTMASSREQDSGFREKGEGFGENWGFNQRAKSRRKKGGA 96 D+ A E + F+E+ EG WG + +AK+ R A Sbjct: 38 DSAAKQEEILAAFKEELEGIAHRWGEDAKAKAERMLNAA 76
>DPOE_CRYNE (Q5K9M7) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2250 Score = 28.5 bits (62), Expect = 7.9 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 176 FREKGEGFGENWGFNQRAKSRRK-KGGADILAHSSWRDS*RPGLSSNKAS 30 FR +G G G +G N R RR+ +GG ++ RP S+N+A+ Sbjct: 7 FRGRGRGSGSGFGSNTRFTGRRRGRGGGGGGGGVAYGIDRRPATSTNQAN 56
>RS14_DROME (P14130) 40S ribosomal protein S14| Length = 151 Score = 28.5 bits (62), Expect = 7.9 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = -3 Query: 229 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 104 G +++ TP P S +R AR +GRI S S R GGRR Sbjct: 101 GGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRRKGGRR 147 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,099,982 Number of Sequences: 219361 Number of extensions: 986837 Number of successful extensions: 3752 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3591 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3739 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
