ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl39d05 |
|---|---|
| Clone Library Name | barley_pub |
>GLR35_ARATH (Q9SW97) Glutamate receptor 3.5 precursor (Ligand-gated ion channel| 3.5) (Ionotropic glutamate receptor GLR6) Length = 953 Score = 146 bits (369), Expect = 2e-35 Identities = 69/96 (71%), Positives = 83/96 (86%) Frame = +1 Query: 145 PSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIE 324 PS V VGALFTYDS IGRAA+LA A++D+NAD+++L GT+L+++ QDTNCSGFVGT+ Sbjct: 45 PSSVNVGALFTYDSFIGRAAKLAFVAAIEDINADQSILRGTKLNIVFQDTNCSGFVGTMG 104 Query: 325 ALELMENNVVAVIGPQSSGIGHVISHVVNELHVPLL 432 AL+LMEN VVA IGPQSSGIGH+ISHV NELHVP L Sbjct: 105 ALQLMENKVVAAIGPQSSGIGHIISHVANELHVPFL 140
>GLR34_ARATH (Q8GXJ4) Glutamate receptor 3.4 precursor (Ligand-gated ion channel| 3.4) (AtGLR4) Length = 959 Score = 142 bits (357), Expect = 5e-34 Identities = 69/97 (71%), Positives = 84/97 (86%) Frame = +1 Query: 142 RPSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTI 321 RPS V VGALFTYDS IGRAA+ A++ A+DDVNAD++VL G +L++I QD+NCSGF+GT+ Sbjct: 57 RPSSVNVGALFTYDSFIGRAAKPAVKAAMDDVNADQSVLKGIKLNIIFQDSNCSGFIGTM 116 Query: 322 EALELMENNVVAVIGPQSSGIGHVISHVVNELHVPLL 432 AL+LMEN VVA IGPQSSGI H+IS+V NELHVPLL Sbjct: 117 GALQLMENKVVAAIGPQSSGIAHMISYVANELHVPLL 153
>GLR33_ARATH (Q9C8E7) Glutamate receptor 3.3 precursor (Ligand-gated ion channel| 3.3) Length = 933 Score = 114 bits (284), Expect = 1e-25 Identities = 50/97 (51%), Positives = 76/97 (78%) Frame = +1 Query: 142 RPSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTI 321 +P V +G++F++DSVIG+ A++AI+ AV DVN++ +L+GT+ S+ Q++NCSGF+G + Sbjct: 25 KPKVVKIGSIFSFDSVIGKVAKIAIDEAVKDVNSNPDILSGTKFSVSMQNSNCSGFMGMV 84 Query: 322 EALELMENNVVAVIGPQSSGIGHVISHVVNELHVPLL 432 EAL ME ++V +IGPQ S + H+ISH+ NEL VPLL Sbjct: 85 EALRFMEKDIVGIIGPQCSVVAHMISHMANELRVPLL 121
>GLR37_ARATH (Q9SDQ4) Glutamate receptor 3.7 precursor (Ligand-gated ion channel| 3.7) (Ionotropic glutamate receptor GLR5) Length = 921 Score = 99.8 bits (247), Expect = 3e-21 Identities = 49/97 (50%), Positives = 67/97 (69%) Frame = +1 Query: 142 RPSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTI 321 RP V +GA+F +DSVIGRAA++A+E AV DVN D++ L T L L+ +D+ C+ F G+ Sbjct: 27 RPQLVNIGAVFAFDSVIGRAAKVALEAAVSDVNNDKSFLKETELRLLMEDSACNVFRGSF 86 Query: 322 EALELMENNVVAVIGPQSSGIGHVISHVVNELHVPLL 432 A EL+E VVA+IGP SS + H IS + LH PL+ Sbjct: 87 GAFELLEKEVVAMIGPISSSVAHTISDIAKGLHFPLV 123
>GLR36_ARATH (Q84W41) Glutamate receptor 3.6 precursor (Ligand-gated ion channel| 3.6) Length = 903 Score = 92.4 bits (228), Expect = 4e-19 Identities = 42/97 (43%), Positives = 67/97 (69%) Frame = +1 Query: 142 RPSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTI 321 RP V +G++FT++S+IG+ ++A++ AV+DVNA ++L T L +I DT +GF+ + Sbjct: 26 RPQVVNIGSVFTFNSLIGKVIKVAMDAAVEDVNASPSILNTTTLRIIMHDTKYNGFMSIM 85 Query: 322 EALELMENNVVAVIGPQSSGIGHVISHVVNELHVPLL 432 E L+ ME+ VA+IGPQ S V++HV EL +P+L Sbjct: 86 EPLQFMESETVAIIGPQRSTTARVVAHVATELKIPIL 122
>GLR31_ARATH (Q7XJL2) Glutamate receptor 3.1 precursor (Ligand-gated ion channel| 3.1) (AtGLR2) Length = 921 Score = 92.0 bits (227), Expect = 5e-19 Identities = 43/97 (44%), Positives = 67/97 (69%) Frame = +1 Query: 142 RPSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTI 321 RP + VGA+F +++ G A +A + A +DVN+D + L G++L ++ D SGF+ + Sbjct: 26 RPPVIKVGAIFGLNTMYGETANIAFKAAEEDVNSDPSFLGGSKLRILMNDAKRSGFLSIM 85 Query: 322 EALELMENNVVAVIGPQSSGIGHVISHVVNELHVPLL 432 AL+ ME +VVA+IGPQ+S + HV+SH+ NEL VP+L Sbjct: 86 GALQFMETDVVAIIGPQTSIMAHVLSHLANELTVPML 122
>GLR32_ARATH (Q93YT1) Glutamate receptor 3.2 precursor (Ligand-gated ion channel| 3.2) (AtGluR2) Length = 912 Score = 87.4 bits (215), Expect = 1e-17 Identities = 42/99 (42%), Positives = 66/99 (66%) Frame = +1 Query: 136 GPRPSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVG 315 G RP V VGA+F+ ++ G +A++ A +DVN+D + L G++L + D +GF+ Sbjct: 24 GLRPRYVDVGAIFSLGTLQGEVTNIAMKAAEEDVNSDPSFLGGSKLRITTYDAKRNGFLT 83 Query: 316 TIEALELMENNVVAVIGPQSSGIGHVISHVVNELHVPLL 432 + AL+ ME + VA+IGPQ+S + HV+SH+ NEL VP+L Sbjct: 84 IMGALQFMETDAVAIIGPQTSIMAHVLSHLANELSVPML 122
>GABR1_RAT (Q9Z0U4) Gamma-aminobutyric acid type B receptor, subunit 1| precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1) Length = 991 Score = 41.6 bits (96), Expect = 8e-04 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Frame = +1 Query: 154 VAVGALFTYDSVI--GRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEA 327 V +GALF G+A + A+E+A++DVN+ R +L L LI D+ C T Sbjct: 169 VYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYL 228 Query: 328 LELMENNVVAVI 363 EL+ N+ + +I Sbjct: 229 YELLYNDPIKII 240
>GABR1_HUMAN (Q9UBS5) Gamma-aminobutyric acid type B receptor, subunit 1| precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1) Length = 961 Score = 41.6 bits (96), Expect = 8e-04 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Frame = +1 Query: 154 VAVGALFTYDSVI--GRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEA 327 V +GALF G+A + A+E+A++DVN+ R +L L LI D+ C T Sbjct: 170 VYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYL 229 Query: 328 LELMENNVVAVI 363 EL+ N+ + +I Sbjct: 230 YELLYNDPIKII 241
>GABR1_MOUSE (Q9WV18) Gamma-aminobutyric acid type B receptor, subunit 1| precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1) Length = 960 Score = 41.6 bits (96), Expect = 8e-04 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Frame = +1 Query: 154 VAVGALFTYDSVI--GRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEA 327 V +GALF G+A + A+E+A++DVN+ R +L L LI D+ C T Sbjct: 169 VYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYL 228 Query: 328 LELMENNVVAVI 363 EL+ N+ + +I Sbjct: 229 YELLYNDPIKII 240
>GRIK3_RAT (P42264) Glutamate receptor, ionotropic kainate 3 precursor| (Glutamate receptor 7) (GluR-7) (GluR7) Length = 919 Score = 39.7 bits (91), Expect = 0.003 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 5/99 (5%) Frame = +1 Query: 145 PSEVAVGALFTY----DSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNC-SGF 309 P + +G +F Y ++ + A A + + +N +RT+L T L+ Q + F Sbjct: 33 PHVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSF 92 Query: 310 VGTIEALELMENNVVAVIGPQSSGIGHVISHVVNELHVP 426 T +A + + VVA+ GP + + + N L VP Sbjct: 93 EATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVP 131
>GRIK3_HUMAN (Q13003) Glutamate receptor, ionotropic kainate 3 precursor| (Glutamate receptor 7) (GluR-7) (GluR7) (Excitatory amino acid receptor 5) (EAA5) Length = 919 Score = 39.7 bits (91), Expect = 0.003 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 5/99 (5%) Frame = +1 Query: 145 PSEVAVGALFTY----DSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNC-SGF 309 P + +G +F Y ++ + A A + + +N +RT+L T L+ Q + F Sbjct: 33 PHVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSF 92 Query: 310 VGTIEALELMENNVVAVIGPQSSGIGHVISHVVNELHVP 426 T +A + + VVA+ GP + + + N L VP Sbjct: 93 EATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVP 131
>GLR23_ARATH (Q9SHV2) Glutamate receptor 2.3 precursor (Ligand-gated ion channel| 2.3) Length = 895 Score = 33.5 bits (75), Expect = 0.23 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Frame = +1 Query: 154 VAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEALE 333 V VG + D+ + L I +++ D + TRL + D+ I AL+ Sbjct: 31 VDVGVVTDVDTSHSKVVMLCINMSISDFYSSNPQFE-TRLVVNVGDSKSDVVGAAIAALD 89 Query: 334 LMENNVV-AVIGPQSSGIGHVISHVVNELHVPLL 432 L++N V A++GP +S H + + + VP++ Sbjct: 90 LIKNKQVKAILGPWTSMQAHFLIEIGQKSRVPIV 123
>GUC2D_RAT (P51839) Olfactory guanylyl cyclase GC-D precursor (EC 4.6.1.2)| (Guanylate cyclase, olfactory) Length = 1110 Score = 33.1 bits (74), Expect = 0.30 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +1 Query: 208 LAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEALELM---ENNVVAVIGPQSS 378 +A +LAVD VN D ++L G++L T C T AL N V A IGP + Sbjct: 91 MATQLAVDRVNQDASLLLGSQLDFKILPTGCD----TPHALATFVAHRNTVAAFIGPVNP 146 Query: 379 G 381 G Sbjct: 147 G 147
>GRIK4_RAT (Q01812) Glutamate receptor, ionotropic kainate 4 precursor| (Glutamate receptor KA-1) (KA1) Length = 956 Score = 32.3 bits (72), Expect = 0.51 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = +1 Query: 145 PSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIE 324 P + + A+ R RL+I LA + +N L ++ + + T E Sbjct: 22 PHSLRIAAILDDPMECSRGERLSITLAKNRINRAPERLGKAKVEVDIFELLRDSEYETAE 81 Query: 325 AL-ELMENNVVAVIGPQSS-GIGHVISHVVNELHVP 426 + +++ VVAV+GP SS +IS++ E VP Sbjct: 82 TMCQILPKGVVAVLGPSSSPASSSIISNICGEKEVP 117
>GRIK4_PANTR (Q5IS46) Glutamate receptor, ionotropic kainate 4 precursor| Length = 956 Score = 32.3 bits (72), Expect = 0.51 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = +1 Query: 145 PSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIE 324 P + + A+ R RL+I LA + +N L ++ + + T E Sbjct: 22 PHSLRIAAILDDPMECSRGERLSITLAKNRINRAPERLGKAKVEVDIFELLRDSEYETAE 81 Query: 325 AL-ELMENNVVAVIGPQSS-GIGHVISHVVNELHVP 426 + +++ VVAV+GP SS +IS++ E VP Sbjct: 82 TMCQILPKGVVAVLGPSSSPASSSIISNICGEKEVP 117
>GRIK4_MOUSE (Q8BMF5) Glutamate receptor, ionotropic kainate 4 precursor| Length = 956 Score = 32.3 bits (72), Expect = 0.51 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = +1 Query: 145 PSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIE 324 P + + A+ R RL+I LA + +N L ++ + + T E Sbjct: 22 PHSLRIAAILDDPMECSRGERLSITLAKNRINRAPERLGKAKVEVDIFELLRDSEYETAE 81 Query: 325 AL-ELMENNVVAVIGPQSS-GIGHVISHVVNELHVP 426 + +++ VVAV+GP SS +IS++ E VP Sbjct: 82 TMCQILPKGVVAVLGPSSSPASSSIISNICGEKEVP 117
>GRIK4_HUMAN (Q16099) Glutamate receptor, ionotropic kainate 4 precursor| (Glutamate receptor KA-1) (KA1) (Excitatory amino acid receptor 1) (EAA1) Length = 956 Score = 32.3 bits (72), Expect = 0.51 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = +1 Query: 145 PSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIE 324 P + + A+ R RL+I LA + +N L ++ + + T E Sbjct: 22 PHSLRIAAILDDPMECSRGERLSITLAKNRINRAPERLGKAKVEVDIFELLRDSEYETAE 81 Query: 325 AL-ELMENNVVAVIGPQSS-GIGHVISHVVNELHVP 426 + +++ VVAV+GP SS +IS++ E VP Sbjct: 82 TMCQILPKGVVAVLGPSSSPASSSIISNICGEKEVP 117
>KAS2_STRVN (P16541) Granaticin polyketide putative beta-ketoacyl synthase 2| (EC 2.3.1.-) (ORF2) Length = 415 Score = 32.0 bits (71), Expect = 0.67 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -3 Query: 318 GP-DEAAAVGVLRDEAEPGAGEHRAVRVDVVDGELDGEPRRAA 193 GP D AAA+ LRD+ P G HRAV + G PR AA Sbjct: 342 GPADLAAALLALRDQVIPATGRHRAVPDAYALDLVTGRPREAA 384
>MSP1_SCHPO (P87320) Protein msp1, mitochondrial precursor| Length = 903 Score = 30.0 bits (66), Expect = 2.5 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 14/96 (14%) Frame = +1 Query: 181 DSVIGRAARLAIE-LAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEALEL------- 336 D+ +G A LA L+VD V+ + T+ A + L + + T + +E+ Sbjct: 195 DTTVGIGAALAASILSVDSVDGEDTLTADEKRKLAQESKEDRMMLFTKKMIEIRNILQDI 254 Query: 337 MENNV------VAVIGPQSSGIGHVISHVVNELHVP 426 +NN + VIG QSSG V+ +V +P Sbjct: 255 QDNNSAVTLPSIVVIGSQSSGKSSVLEAIVGHEFLP 290
>SPAG1_MOUSE (Q80ZX8) Sperm-associated antigen 1 (Infertility-related sperm| protein Spag-1) (TPR-containing protein involved in spermatogenesis) (TPIS) Length = 901 Score = 30.0 bits (66), Expect = 2.5 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Frame = -3 Query: 321 DGPDEAAAVGVLRDEAEPGAG-EHRAVRVDVVDGELDGEPRRAA 193 D + A + D A P G E R ++V VDG D EP R A Sbjct: 705 DSSEAARHLDTKNDTAPPSKGRERRRIQVQEVDGSSDEEPERPA 748
>GCY_STRPU (P16065) Speract receptor precursor (Guanylate cyclase) (EC| 4.6.1.2) Length = 1125 Score = 29.6 bits (65), Expect = 3.3 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Frame = +1 Query: 190 IGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEALELMENNVVAVIGP 369 +G A A+ LA+ N D +L G + DT+C +G + + V VIGP Sbjct: 57 LGFPALGALPLAISLANQDSNILNGFDVQFEWVDTHCDINIGMHAVSDWWKRGFVGVIGP 116 Query: 370 QSSGIGHVI-SHVVNELHVPLL 432 G G + + L++P++ Sbjct: 117 ---GCGCTYEGRLASALNIPMI 135
>MRP2_HUMAN (Q92887) Canalicular multispecific organic anion transporter 1| (ATP-binding cassette sub-family C member 2) (Multidrug resistance-associated protein 2) (Canalicular multidrug resistance protein) Length = 1545 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +1 Query: 328 LELMENNVVAVIGPQSSGIGHVISHVVNEL 417 L++M +VAVIGP SG +IS ++ E+ Sbjct: 659 LDIMAGQLVAVIGPVGSGKSSLISAMLGEM 688
>ORC4_HUMAN (O43929) Origin recognition complex subunit 4| Length = 436 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +1 Query: 340 ENNVVAVIGPQSSGIGHVISHVVNEL 417 E+N V +IGP+ SG +I+H + EL Sbjct: 59 ESNSVLIIGPRGSGKTMLINHALKEL 84
>Y087_THEMA (Q9WXU2) UPF0103 protein TM0087| Length = 277 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +1 Query: 313 GTIEALELMENNVVAVIGPQSSGIGHVI 396 G +EA++ E +VV +IGP +G+G + Sbjct: 68 GFLEAVKFGEPSVVVIIGPNHTGLGRPV 95
>GLR22_ARATH (Q9SHV1) Glutamate receptor 2.2 precursor (Ligand-gated ion channel| 2.2) Length = 920 Score = 28.1 bits (61), Expect = 9.7 Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Frame = +1 Query: 148 SEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEA 327 ++V +G + + A L I +++ D + R TRL + D+ A Sbjct: 30 TQVNIGVVSDVGTSYPDVAMLCINMSLADFYSSRPQFQ-TRLVVNVGDSKNDVVGAATAA 88 Query: 328 LELMENNVV-AVIGPQSSGIGHVISHVVNELHVPLL 432 ++L++N V A++GP +S H + + + VP++ Sbjct: 89 IDLIKNKQVKAILGPWTSMQAHFLIEIGQKSRVPVV 124
>YPX2_CAEEL (Q20256) Hypothetical protein F40H6.2| Length = 997 Score = 28.1 bits (61), Expect = 9.7 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%) Frame = -1 Query: 419 CSSLTTWEMTWPIPDDCGPITATTLFSISSNASMVP-----TKPLQLVS 288 C+S T E+ IPD G TAT L S+S+ ++ T+P+Q+VS Sbjct: 291 CASATNGELVVTIPD--GLSTATPLSSLSTASTPTKTVGFYTRPVQIVS 337 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,637,678 Number of Sequences: 219361 Number of extensions: 629399 Number of successful extensions: 2462 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2402 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2462 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
