ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl39d03 |
|---|---|
| Clone Library Name | barley_pub |
>IMB1_SCHPO (O13864) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 863 Score = 60.5 bits (145), Expect = 2e-09 Identities = 34/96 (35%), Positives = 50/96 (52%) Frame = +2 Query: 173 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 352 M+ + L SPD N+R AE ++ + +++ L+ EL+ND P R AG+ Sbjct: 1 MNAGEFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLA 60 Query: 353 LKNSLDAXDSARKELLIQQWVSLDHSIKSQIKESLL 460 LKN++ A + ARK Q W SL IK Q+K L Sbjct: 61 LKNAITAREEARKLEYQQLWQSLPVEIKQQVKSLAL 96
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 53.1 bits (126), Expect = 4e-07 Identities = 31/96 (32%), Positives = 53/96 (55%) Frame = +2 Query: 173 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 352 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 353 LKNSLDAXDSARKELLIQQWVSLDHSIKSQIKESLL 460 +KNSL + D K Q+W+++D + + ++K +L Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVL 96
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 53.1 bits (126), Expect = 4e-07 Identities = 31/96 (32%), Positives = 53/96 (55%) Frame = +2 Query: 173 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 352 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 353 LKNSLDAXDSARKELLIQQWVSLDHSIKSQIKESLL 460 +KNSL + D K Q+W+++D + + ++K +L Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVL 96
>IMB1_YEAST (Q06142) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 861 Score = 47.8 bits (112), Expect = 1e-05 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Frame = +2 Query: 206 SPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIILKNSLDAXDSA 385 SPD N+R +E +K+ N F S L ++ E R LA + LKN L + DS Sbjct: 16 SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75 Query: 386 RKELLIQQWVS-LDHSIKSQIKESLL 460 + + Q+W++ + K+QIK + L Sbjct: 76 KTQQFAQRWITQVSPEAKNQIKTNAL 101
>IMB_DROME (O18388) Importin beta subunit (Karyopherin beta-4 subunit)| (Protein ketel) Length = 884 Score = 47.8 bits (112), Expect = 1e-05 Identities = 31/96 (32%), Positives = 45/96 (46%) Frame = +2 Query: 173 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 352 M + IL SPD N +A+ ++Q NLP FL +LS L N +R AG+ Sbjct: 7 MQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILVNTANSAVARMAAGLQ 66 Query: 353 LKNSLDAXDSARKELLIQQWVSLDHSIKSQIKESLL 460 LKN L + D + +W I+ IK ++L Sbjct: 67 LKNHLTSKDEKVSQQYQDRWHQFPSEIRELIKNNIL 102
>IMB1_RAT (P52296) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) Length = 875 Score = 42.7 bits (99), Expect = 5e-04 Identities = 28/96 (29%), Positives = 51/96 (53%) Frame = +2 Query: 173 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 352 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 353 LKNSLDAXDSARKELLIQQWVSLDHSIKSQIKESLL 460 ++ L + D K Q+W+++D + + ++K +L Sbjct: 61 IR-LLTSKDPDIKAQYQQRWLAIDANARREVKNYVL 95
>TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopherin beta-2)| Length = 890 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Frame = +2 Query: 170 VMDITQILLAAQSPDGNLRSAAEANIKQF-QEQNLPNFLLSLSVELSNDERPPESRRLAG 346 + I Q+L +QSPD ++ + ++Q Q + N+L+ + +L +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 347 IILKNSLDA 373 +ILKN++ A Sbjct: 70 LILKNNVKA 78
>TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopherin beta-2) (M9| region interaction protein) (MIP) Length = 890 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Frame = +2 Query: 170 VMDITQILLAAQSPDGNLRSAAEANIKQF-QEQNLPNFLLSLSVELSNDERPPESRRLAG 346 + I Q+L +QSPD ++ + ++Q Q + N+L+ + +L +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 347 IILKNSLDA 373 +ILKN++ A Sbjct: 70 LILKNNVKA 78
>TNPO2_HUMAN (O14787) Transportin-2 (Karyopherin beta-2b)| Length = 897 Score = 35.0 bits (79), Expect = 0.10 Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +2 Query: 170 VMDITQILLAAQSPDGNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAG 346 + + Q+L +QSP+ + + +KQ + + N+L+ + L +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 347 IILKNSLDA 373 +ILKN++ A Sbjct: 68 LILKNNVKA 76
>TNPO2_MOUSE (Q99LG2) Transportin-2 (Karyopherin beta-2b)| Length = 887 Score = 35.0 bits (79), Expect = 0.10 Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +2 Query: 170 VMDITQILLAAQSPDGNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAG 346 + + Q+L +QSP+ + + +KQ + + N+L+ + L +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 347 IILKNSLDA 373 +ILKN++ A Sbjct: 68 LILKNNVKA 76
>IMB5_YEAST (P53067) Importin beta-5 subunit (Karyopherin beta-5 subunit) (114| kDa karyopherin) Length = 1004 Score = 32.7 bits (73), Expect = 0.50 Identities = 25/96 (26%), Positives = 46/96 (47%) Frame = +2 Query: 173 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 352 MDI ++++ AQS D + R AE + Q+ + + +L+ E ESR+ A + Sbjct: 1 MDINELIIGAQSADKHTREVAETQLLQWCDSDASQVFKALANVALQHEASLESRQFALLS 60 Query: 353 LKNSLDAXDSARKELLIQQWVSLDHSIKSQIKESLL 460 L+ + S E + +++ +K I+E LL Sbjct: 61 LRKLITMYWSPGFE-SYRSTSNVEIDVKDFIREVLL 95
>PTPRV_RAT (Q64612) Receptor-type tyrosine-protein phosphatase V precursor (EC| 3.1.3.48) (Embryonic stem cell protein-tyrosine phosphatase) (ES cell phosphatase) (Osteotesticular protein-tyrosine phosphatase) (OST-PTP) Length = 1711 Score = 32.0 bits (71), Expect = 0.85 Identities = 19/40 (47%), Positives = 23/40 (57%) Frame = -3 Query: 311 HSITPPTRIGGSWEDSAPGTA*CWLLLLSEGYHLETEQLA 192 HS P R+ SW D APG + LLL YHLE++ LA Sbjct: 137 HSAGSPARLEASWSD-APGDQDSYQLLL---YHLESQTLA 172
>K1949_PIG (Q767M0) Protein KIAA1949 homolog| Length = 618 Score = 29.6 bits (65), Expect = 4.2 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -1 Query: 211 WRLSS*QNLSDIHDCCTCPEERICRGMLPRSLARLPASQT 92 WRLSS + D + C EER GM+P + P + T Sbjct: 267 WRLSSGEERKDCLEECGRKEERTLPGMVPEDITGSPETLT 306
>STRH_STRPN (P49610) Beta-N-acetylhexosaminidase precursor (EC 3.2.1.52)| Length = 1312 Score = 29.3 bits (64), Expect = 5.5 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%) Frame = +2 Query: 107 QASERARKHPPADSFFWAGATVMDITQILLAAQSPDGNLRSAAEANIKQF---QEQNLPN 277 +++E+A P D + +V + + A +S D NL A + I Q ++ + N Sbjct: 550 ESAEQALNEVPKDLNRYTAESVTAVKEAEKAIRSLDSNLSRAQQDTIDQAIAKLQETVNN 609 Query: 278 FLLSLSVELSNDERPPESRRLAGIILKNSLDAXDSARKELLIQQ 409 L+L+ E +E E++R + KN + + D+ RK + Q Sbjct: 610 --LTLTPEAQKEE---EAKREVEKLAKNKVISIDAGRKYFTLNQ 648
>DPO4_THETN (P58965) DNA polymerase IV (EC 2.7.7.7) (Pol IV)| Length = 384 Score = 29.3 bits (64), Expect = 5.5 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Frame = +2 Query: 242 NIKQFQEQNLPNFLLSLSVELSN-----DERPPESRRLAGIILKNSLDAXDSARKELLIQ 406 ++ + ++NL VE+ N DERP E+ R I K D+ KELLIQ Sbjct: 199 DLLKLPQENLIELFGKTGVEIYNRIRGIDERPVETMREIKSIGKEKTLEKDTKNKELLIQ 258 Query: 407 QWVSLDHSIKSQ-IKESL 457 + + IKE L Sbjct: 259 HLKEFSEIVSEELIKERL 276
>KPYK_TRYBO (Q27788) Pyruvate kinase (EC 2.7.1.40) (PK)| Length = 498 Score = 28.9 bits (63), Expect = 7.2 Identities = 10/32 (31%), Positives = 19/32 (59%) Frame = -1 Query: 235 CC*AKVTIWRLSS*QNLSDIHDCCTCPEERIC 140 CC +VT+W +++ + + ++ PEE IC Sbjct: 350 CCETQVTMWNMAAFEAIKNLQSFPLIPEEAIC 381
>DRL17_ARATH (O64790) Putative disease resistance protein At1g61300| Length = 766 Score = 28.5 bits (62), Expect = 9.4 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Frame = +2 Query: 245 IKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAGI--ILKNSLDAXDSARKELLIQQWV 415 +K+ Q+ QNL + ++LS ELS ++R + GI L+ D A E L WV Sbjct: 535 LKELQKLQNLQHLAITLSAELSLNQRLANLISILGIEGFLQKPFDLSFLASMENLSSLWV 594 Query: 416 SLDHSIKSQIKES 454 + + + +ES Sbjct: 595 KNSYFSEIKCRES 607 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,352,551 Number of Sequences: 219361 Number of extensions: 941622 Number of successful extensions: 2561 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2503 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2560 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
