Clone Name | bastl39c12 |
---|---|
Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 158 bits (400), Expect = 5e-39 Identities = 80/103 (77%), Positives = 80/103 (77%) Frame = +2 Query: 143 MLTATKPLVGGACXXXXXXXXXXTFVVPEARRKPGNGRRTSVSKVGXXXXXXXXXXXXXL 322 MLTATKPLVGGAC TFVVPEARRKPGNGRRTSVSKVG L Sbjct: 1 MLTATKPLVGGACAAPSSSARRRTFVVPEARRKPGNGRRTSVSKVGSTSTSTTTTTTTTL 60 Query: 323 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGVR 451 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGVR Sbjct: 61 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGVR 103
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 57.0 bits (136), Expect = 2e-08 Identities = 40/97 (41%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Frame = +2 Query: 143 MLTATKPLVGGACXXXXXXXXXXTFVVPEARRKPG-NGRRTSVSKVGXXXXXXXXXXXXX 319 M TATKPLVG +F+V EARRKP N RRT V Sbjct: 1 MQTATKPLVGARAVPLSRRA---SFLVAEARRKPSTNARRTRVGSTSTTTTTTT------ 51 Query: 320 LSADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHM 430 + D NG A+ TV +P H D EMKATV+VHM Sbjct: 52 ILTDVNGPALTTVAKPG-HQYDLKQTVEMKATVSVHM 87
>SYH_PROMM (Q7V4P3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 436 Score = 29.6 bits (65), Expect = 3.7 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +2 Query: 320 LSADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGV 448 ++ + A + TRPD++V +R E A V H +AAG+ Sbjct: 320 INPSGSAARLRASTRPDLYVVNRGEQAERVALVIAHQLRAAGL 362
>SC10A_RAT (Q62968) Sodium channel protein type 10 alpha subunit (Sodium| channel protein type X alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.8) (Peripheral nerve sodium channel 3) (Sensory neuron sodium channel) Length = 1956 Score = 29.6 bits (65), Expect = 3.7 Identities = 17/55 (30%), Positives = 22/55 (40%) Frame = +1 Query: 64 LGRNQPRRCNLPPHRVAQ*PTP*RTHDADGDQAASRGRVCRAVVVGPAEDVRGAR 228 LGR + LP + Q P P R H +G G + GPA D G + Sbjct: 538 LGRGAGQTGPLPRSPLPQSPNPGRRHGEEGQLGVPTGELTAGAPEGPALDTTGQK 592
>PO121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) Length = 1200 Score = 29.3 bits (64), Expect = 4.8 Identities = 15/33 (45%), Positives = 17/33 (51%) Frame = -1 Query: 242 VSGEPRAPRTSSAGPTTTARHTRPRLAAWSPSA 144 +S EPR PR S+ RH RP L A P A Sbjct: 71 LSREPRGPRALSSFVRDARRHPRPALTASPPPA 103
>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of| white-apricot homolog 2) (Clk4-associating SR-related protein) Length = 653 Score = 28.5 bits (62), Expect = 8.2 Identities = 22/66 (33%), Positives = 26/66 (39%) Frame = -1 Query: 227 RAPRTSSAGPTTTARHTRPRLAAWSPSASWVRYGVGYCATRWGGRLHRLGWFRPS*TVQP 48 R+ S G + RH R R +WS S S R Y +R GR H G R Sbjct: 378 RSSSRSRRGYYRSGRHARSRSRSWSRSRSRSR---RYSRSRSRGRRHSDGGSRDGHRYSR 434 Query: 47 CPGRSG 30 P R G Sbjct: 435 SPARRG 440 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,993,591 Number of Sequences: 219361 Number of extensions: 964859 Number of successful extensions: 2751 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2695 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2749 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)