Clone Name | bastl39c05 |
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Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 149 bits (377), Expect = 2e-36 Identities = 75/99 (75%), Positives = 76/99 (76%) Frame = +2 Query: 143 MLTATKPLVGGACXXXXXXXXXXTFVVPEARRKPGNGRRTSVSKVGXXXXXXXXXXXXXL 322 MLTATKPLVGGAC TFVVPEARRKPGNGRRTSVSKVG L Sbjct: 1 MLTATKPLVGGACAAPSSSARRRTFVVPEARRKPGNGRRTSVSKVGSTSTSTTTTTTTTL 60 Query: 323 SADSNGAAVGTVTRPDVHVQDRTHATEMEATVTVHMSKA 439 SADSNGAAVGTVTRPDVHVQDRTHATEM+ATVTVHMSKA Sbjct: 61 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKA 99
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 55.5 bits (132), Expect = 6e-08 Identities = 39/97 (40%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Frame = +2 Query: 143 MLTATKPLVGGACXXXXXXXXXXTFVVPEARRKPG-NGRRTSVSKVGXXXXXXXXXXXXX 319 M TATKPLVG +F+V EARRKP N RRT V Sbjct: 1 MQTATKPLVGARAVPLSRRA---SFLVAEARRKPSTNARRTRVGSTSTTTTTTT------ 51 Query: 320 LSADSNGAAVGTVTRPDVHVQDRTHATEMEATVTVHM 430 + D NG A+ TV +P H D EM+ATV+VHM Sbjct: 52 ILTDVNGPALTTVAKPG-HQYDLKQTVEMKATVSVHM 87
>SC10A_RAT (Q62968) Sodium channel protein type 10 alpha subunit (Sodium| channel protein type X alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.8) (Peripheral nerve sodium channel 3) (Sensory neuron sodium channel) Length = 1956 Score = 30.4 bits (67), Expect = 2.0 Identities = 17/55 (30%), Positives = 22/55 (40%) Frame = +1 Query: 64 LGRNQPRRCNLPPHRVAQ*PTPQRTHDADGDQAASRGRVCRAVVVGPAEDVRGAR 228 LGR + LP + Q P P R H +G G + GPA D G + Sbjct: 538 LGRGAGQTGPLPRSPLPQSPNPGRRHGEEGQLGVPTGELTAGAPEGPALDTTGQK 592
>PO121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) Length = 1200 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/33 (45%), Positives = 17/33 (51%) Frame = -1 Query: 242 VSGEPRAPRTSSAGPTTTARHTRPRLAAWSPSA 144 +S EPR PR S+ RH RP L A P A Sbjct: 71 LSREPRGPRALSSFVRDARRHPRPALTASPPPA 103
>MYO1F_HUMAN (O00160) Myosin If (Myosin-IE)| Length = 1098 Score = 29.3 bits (64), Expect = 4.5 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = +1 Query: 64 LGRNQPRRCNLPPHRVAQ*PTPQRTHDADGDQAASRGRVCRAVVVGPAEDVRGARGSPET 243 + + +PRR + P R A P P R D +G ++RG ++ R RG P T Sbjct: 930 MAKGKPRRSSQAPTRAA--PAPPRGMDRNGVPPSARGGPLPLEIMSGGGTHRPPRGPPST 987
>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of| white-apricot homolog 2) (Clk4-associating SR-related protein) Length = 653 Score = 28.5 bits (62), Expect = 7.7 Identities = 22/66 (33%), Positives = 26/66 (39%) Frame = -1 Query: 227 RAPRTSSAGPTTTARHTRPRLAAWSPSASWVRCGVGYCATRWGGRLHRLGWFRPS*TVQP 48 R+ S G + RH R R +WS S S R Y +R GR H G R Sbjct: 378 RSSSRSRRGYYRSGRHARSRSRSWSRSRSRSR---RYSRSRSRGRRHSDGGSRDGHRYSR 434 Query: 47 CPGRSG 30 P R G Sbjct: 435 SPARRG 440 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,441,654 Number of Sequences: 219361 Number of extensions: 943706 Number of successful extensions: 2851 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2783 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2849 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)