>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds
          Length = 3586

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 75  cgctggatctggcgcggcagctcccgccggccgcctactact 116
           ||||||||||| |||||||||||||| ||||||| |||||||
Sbjct: 82  cgctggatctgacgcggcagctcccggcggccgcgtactact 123

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 77     ctggatctggcgcggcagctcccgccggccgcct 110
              ||||||||| ||||||||||| ||||||| ||||
Sbjct: 317350 ctggatctgacgcggcagctctcgccggctgcct 317317

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 77     ctggatctggcgcggcagctcccgccggccgcct 110
              ||||||||| ||||||||||| ||||||| ||||
Sbjct: 300382 ctggatctgacgcggcagctctcgccggctgcct 300349

>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full
           insert sequence
          Length = 3724

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 77  ctggatctggcgcggcagctcccgccggccgcct 110
           ||||||||| ||||||||||| ||||||| ||||
Sbjct: 225 ctggatctgacgcggcagctctcgccggctgcct 258

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 77     ctggatctggcgcggcagctcccgccggccgcct 110
              ||||||||| ||||||||||| ||||||| ||||
Sbjct: 300382 ctggatctgacgcggcagctctcgccggctgcct 300349

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 77     ctggatctggcgcggcagctcccgccggccgcct 110
              ||||||||| ||||||||||| ||||||| ||||
Sbjct: 317350 ctggatctgacgcggcagctctcgccggctgcct 317317

>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 77   ctggatctggcgcggcagctcccgccggccgcct 110
            ||||||||| ||||||||||| ||||||| ||||
Sbjct: 4611 ctggatctgacgcggcagctctcgccggctgcct 4644

>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152222

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 77    ctggatctggcgcggcagctcccgccggccgcct 110
             ||||||||| ||||||||||| ||||||| ||||
Sbjct: 50401 ctggatctgacgcggcagctctcgccggctgcct 50368

>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 77   ctggatctggcgcggcagctcccgccggccgcct 110
            ||||||||| ||||||||||| ||||||| ||||
Sbjct: 7700 ctggatctgacgcggcagctctcgccggctgcct 7667

>ref|NM_190755.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 873

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  gcggcagctcccgccggccg 107
           ||||||||||||||||||||
Sbjct: 141 gcggcagctcccgccggccg 160

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    ctgcttttcgcggcggcggt 141
              ||||||||||||||||||||
Sbjct: 272756 ctgcttttcgcggcggcggt 272775

>emb|X69959.1|ACNTRA A.caulinodans NtrA gene for RNA polymerase sigma factor
          Length = 2674

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  gcctgcttttcgcggcggcg 139
            ||||||||||||||||||||
Sbjct: 2429 gcctgcttttcgcggcggcg 2410

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 122     ctgcttttcgcggcggcggt 141
               ||||||||||||||||||||
Sbjct: 2131662 ctgcttttcgcggcggcggt 2131643

>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3695

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 50/58 (86%), Gaps = 4/58 (6%)
 Strand = Plus / Plus

                                                                     
Query: 75  cgctggatctggcgcggcagctcccgccggccgcctactactactgcctgcttttcgc 132
           ||||||||||| |||| ||||||||| ||||||| |||||||   ||||||| |||||
Sbjct: 179 cgctggatctgacgcg-cagctcccggcggccgcgtactact---gcctgctcttcgc 232

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 87       cgcggcagctcccgccggccgcc 109
                |||| ||||||||||||||||||
Sbjct: 31808761 cgcgtcagctcccgccggccgcc 31808783

>gb|AC110251.11| Mus musculus chromosome 5, clone RP23-263O8, complete sequence
          Length = 197946

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 8      cttcctcatataaccctag 26
              |||||||||||||||||||
Sbjct: 140084 cttcctcatataaccctag 140102

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 75      cgctggatctggcgcggca 93
               |||||||||||||||||||
Sbjct: 1023019 cgctggatctggcgcggca 1023037

>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete
              sequence
          Length = 134496

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 87     cgcggcagctcccgccggccgcc 109
              |||| ||||||||||||||||||
Sbjct: 133987 cgcgtcagctcccgccggccgcc 134009

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 79      ggatctggcgcggcagctc 97
               |||||||||||||||||||
Sbjct: 4659781 ggatctggcgcggcagctc 4659763

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 111      actactactgcctgctttt 129
                |||||||||||||||||||
Sbjct: 26610278 actactactgcctgctttt 26610296

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 87       cgcggcagctcccgccggccgcc 109
                |||| ||||||||||||||||||
Sbjct: 31899277 cgcgtcagctcccgccggccgcc 31899299

>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1340_C08
          Length = 192167

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 111    actactactgcctgctttt 129
              |||||||||||||||||||
Sbjct: 155549 actactactgcctgctttt 155567

>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0524G08
          Length = 146690

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 111   actactactgcctgctttt 129
             |||||||||||||||||||
Sbjct: 27882 actactactgcctgctttt 27900

>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 122     ctgcttttcgcggcggcgg 140
               |||||||||||||||||||
Sbjct: 2274695 ctgcttttcgcggcggcgg 2274677

>gb|AC152721.3| Mus musculus BAC clone RP23-425F13 from chromosome 5, complete sequence
          Length = 221637

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     tataaccctagaggctctc 34
              |||||||||||||||||||
Sbjct: 153613 tataaccctagaggctctc 153631

>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete
             sequence
          Length = 150663

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 87    cgcggcagctcccgccggccgcc 109
             |||| ||||||||||||||||||
Sbjct: 10014 cgcgtcagctcccgccggccgcc 10036


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,075,842
Number of Sequences: 3902068
Number of extensions: 1075842
Number of successful extensions: 72787
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 72101
Number of HSP's gapped (non-prelim): 687
length of query: 141
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 120
effective length of database: 17,151,101,840
effective search space: 2058132220800
effective search space used: 2058132220800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)