>RPA1_TRYBB (P16355) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)|
          Length = 1744

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 272  IHEEDPEKDGIGGGDTRNPQRLAGSRRTGAREQC*RISADPEVAD 138
            +H +  +  GI G DT  PQR  GS  +G  +     ++D E AD
Sbjct: 1411 LHSDGTDTRGIAGSDTGGPQRRRGSVESGRGDD----ASDSEAAD 1451

>MSRB2_HUMAN (Q9Y3D2) Methionine-R-sulfoxide reductase B2 (EC 1.8.4.-)|
          Length = 201

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -1

Query: 123 AGAAPRRRSPPSWIDLSGFLLGKNPRRELRGISEGGG 13
           A A  RR     W+ L G  LG  PRR +RG + GGG
Sbjct: 13  AAAPERRHGRLLWL-LRGLTLGTAPRRAVRGQAGGGG 48

>PEX6_PENCH (Q9HG03) Peroxisomal biogenesis factor 6 (Peroxin-6)|
          Length = 1459

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 56  LPRRKPERSIHEGGDRRRGAAPACRSGGRPPQDLLKSFSIAPLLLFSDSRP 208
           LP  KP  +I+  G+RR   +       RPP  L  S  + PLLL +   P
Sbjct: 504 LPSSKPRYAINHSGERRPSISQ------RPPTRLTPSVFVPPLLLGNIENP 548

>NEB1_HUMAN (Q9ULJ8) Neurabin-1 (Neurabin-I) (Neural tissue-specific F-actin|
           binding protein I) (Protein phosphatase 1 regulatory
           subunit 9A)
          Length = 1098

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 62  RRKPERSIHEGGDRRRGAAPACRSGGRPPQD 154
           R+  ERS+HE G   R +    ++GG  PQD
Sbjct: 143 RKMFERSVHESGQNNRYSPKKEKAGGSEPQD 173

>M3K1_MOUSE (P53349) Mitogen-activated protein kinase kinase kinase 1 (EC|
           2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1)
           (MEKK 1)
          Length = 1493

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 21/61 (34%), Positives = 25/61 (40%)
 Frame = -2

Query: 185 AREQC*RISADPEVADHRICTPEQLPAGGPRPHGSISRVFSSARTLGES*EG*ARVGGG* 6
           A   C   S  PE AD         PA GP P G+ SR  S +  L  + +  AR   G 
Sbjct: 87  ASPPCPSTSPSPEPADAAAGASRFQPAAGPPPPGAASRCGSHSAELAAARDSGARSPAGA 146

Query: 5   E 3
           E
Sbjct: 147 E 147

>SYTL2_HUMAN (Q9HCH5) Synaptotagmin-like protein 2 (Exophilin-4)|
          Length = 895

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 365 QNGFAINNSGKVAFNRTFREKILHQIPACDLIHEEDPEKDGIGGGDTRNPQR 210
           +N   IN     +   T  E +L + PA +L H  +PE   + GG +R+ Q+
Sbjct: 420 ENSPTINEPKDKSSELTRLESVLPRSPADELSHCVEPEPSQVPGGSSRDRQQ 471

>IDI2_METKA (Q8TX99) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP|
           isomerase) (Isopentenyl pyrophosphate isomerase)
          Length = 365

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = +3

Query: 321 VESDLA*IVDCKAILGNQSLLAVSFFLSDPE*ELFGSRLSFKMM 452
           VES+ + + DC  I+ +++L  + F   D E ELFG RLSF ++
Sbjct: 17  VESEESPLFDCVKIV-HRALPELDFDDVDMEIELFGKRLSFPLI 59

>AGUA_ERWCT (Q6CZ80) Putative agmatine deiminase (EC 3.5.3.12) (Agmatine|
           iminohydrolase)
          Length = 368

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 311 REKILHQIPACDLIHEEDPEKDGIGGGDTRNPQRLAGSRRTGA 183
           RE  + ++PA   +H    E  G+  GD    +RLAGSR  G+
Sbjct: 265 RELKIWKLPAPGPLHATKEEAQGVDSGDA--VERLAGSRLAGS 305

>M3K1_RAT (Q62925) Mitogen-activated protein kinase kinase kinase 1 (EC|
           2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1)
           (MEKK 1)
          Length = 1493

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 21/61 (34%), Positives = 25/61 (40%)
 Frame = -2

Query: 185 AREQC*RISADPEVADHRICTPEQLPAGGPRPHGSISRVFSSARTLGES*EG*ARVGGG* 6
           A   C   S  PE AD         PA GP P G+ SR  S +  L  + +  AR   G 
Sbjct: 82  ASPPCPSTSPSPEPADAAAGASGFQPAAGPPPPGAASRCGSHSAELAAARDSGARSPAGA 141

Query: 5   E 3
           E
Sbjct: 142 E 142

>OTRA_STRRM (Q55002) Oxytetracycline resistance protein|
          Length = 663

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 271 FTRRIPKRTESEGEILAIRRGW-PGVGEQEQGSNAEG 164
           F +R+P  T+ EG  LA  RG+ P VG+       EG
Sbjct: 610 FNQRVPGLTQGEGVFLAEHRGYRPAVGQPPVRPRPEG 646


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,859,564
Number of Sequences: 219361
Number of extensions: 1529418
Number of successful extensions: 4498
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4494
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)