ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl39a12 |
|---|---|
| Clone Library Name | barley_pub |
>SYQ_XYLFT (Q87DU6) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 26.9 bits (58), Expect(2) = 0.056 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -1 Query: 147 LPKMAHLEHPIPWHGSPKQPSHPTYLKF 64 LP +HL P+ G P++PS P ++F Sbjct: 256 LPNNSHLLKPLLDKGFPQEPSQPRQIEF 283 Score = 26.6 bits (57), Expect(2) = 0.056 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -2 Query: 290 VTHSLADFDFHDHRP 246 +THSL +F DHRP Sbjct: 231 ITHSLCTLEFEDHRP 245
>SYQ_XYLFA (Q9PDP1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 26.9 bits (58), Expect(2) = 0.056 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -1 Query: 147 LPKMAHLEHPIPWHGSPKQPSHPTYLKF 64 LP +HL P+ G P++PS P ++F Sbjct: 256 LPNNSHLLKPLLDKGFPQEPSQPRQIEF 283 Score = 26.6 bits (57), Expect(2) = 0.056 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -2 Query: 290 VTHSLADFDFHDHRP 246 +THSL +F DHRP Sbjct: 231 ITHSLCTLEFEDHRP 245
>PLMN_BOVIN (P06868) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin| heavy chain A; Activation peptide; Plasmin heavy chain A, short form; Plasmin light chain B] Length = 812 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/55 (32%), Positives = 22/55 (40%) Frame = +1 Query: 172 PEAGLRCPTAR*PRTHKGCWSIKTAGRWSWKSKSAKECVTTHLPNQLAPKMDGAE 336 P AGL R P K W T R W+ + K+C T AP+ G E Sbjct: 424 PNAGLTMNYCRNPDADKSPWCYTTDPRVRWEFCNLKKCSETPEQVPAAPQAPGVE 478
>ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20) Length = 1906 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +1 Query: 190 CPTAR*PRTHKGCWSIKTAGRWSWKSKSAKECVTT 294 C PRTHK C S + SWK+ KEC T Sbjct: 1452 CSHLHKPRTHKACRSGRCP---SWKANKWKECSVT 1483
>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88| kDa nuclear pore complex protein) (Nucleoporin Nup84) Length = 742 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +3 Query: 255 VMEVEIR*GVCNNSPAESTSPENGWR*SARPTPGHLGERH 374 V+ + +R G+ N SPAE+ P S P P HL R+ Sbjct: 22 VVFLRLREGLKNQSPAEADKPATSTSPSCPPLPPHLPTRN 61
>RS13_THEVO (Q97B96) 30S ribosomal protein S13P| Length = 171 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +2 Query: 164 GMNRKPGYGAQLRANLEPTKGVGRLRQQD 250 G+ + GY R NL+PTK +G L++ + Sbjct: 54 GIGLRLGYAIAERLNLQPTKKIGELKEDE 82
>SAYP_DROME (Q9VWF2) Supporter of activation of yellow protein (Protein enhancer| of yellow 3) Length = 2006 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = +1 Query: 163 RDEPEAGLRCPTAR*PRTHKGCWSI--KTAGR---WSWKSKSAKECV 288 RD PEA +RC T R R H C + + GR ++W+ K C+ Sbjct: 1707 RDMPEAFIRCYTCR-KRVHPSCVDMPPRMVGRVRNYNWQCAGCKCCI 1752
>OPA1_MOUSE (P58281) Dynamin-like 120 kDa protein, mitochondrial precursor| (Large GTP-binding protein) (LargeG) Length = 960 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +1 Query: 250 RWS-WKSKSAKECVTTHLPNQLAPKMDGAEARDPHPAIWAS 369 RW WK+++ ++CV N+L + + D HPA AS Sbjct: 774 RWMYWKNRTQEQCVHNETKNELEKML---KVNDEHPAYLAS 811
>CYSH_NEIMA (Q9JUD5) Phosphoadenosine phosphosulfate reductase (EC 1.8.4.8)| (PAPS reductase, thioredoxin dependent) (PAdoPS reductase) (3'-phosphoadenylylsulfate reductase) (PAPS sulfotransferase) Length = 244 Score = 28.1 bits (61), Expect = 5.2 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 244 AGRWSWKSKSAKEC 285 AGRW W+ K++KEC Sbjct: 227 AGRWWWEDKNSKEC 240
>CCNL1_CHICK (Q5ZJP9) Cyclin-L1| Length = 534 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = +3 Query: 84 GSAASVSRATESGAPSGPFLVSRTGDAG*TGSRVTVP 194 GSAA+V+ A G P+GP T A TGS VP Sbjct: 6 GSAAAVA-AVAGGGPAGPHAAGVTAGAVTTGSGAPVP 41
>PGMI_AERPE (Q9YE01) Bifunctional phosphoglucose/phosphomannose isomerase| (Glucose-6-phosphate isomerase) (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) (PGI) (Mannose-6-phosphate isomerase) (EC 5.3.1.8) (Phosphomannose isomerase) (PMI) Length = 335 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 9/33 (27%) Frame = -2 Query: 404 RPPRPPTHR--GMALAQMAG-------CGSRAS 333 RPPRPP HR G+ LA +G CGS S Sbjct: 70 RPPRPPRHRGYGLVLASYSGNTLETVECGSLLS 102
>SYQ_CHRVO (Q7NX86) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 560 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 7/30 (23%) Frame = -2 Query: 290 VTHSLADFDFHDHRPA-------VLIDQHP 222 +THSL +F DHRP + I+ HP Sbjct: 227 ITHSLCSLEFEDHRPLYDWVLDNISIEHHP 256
>CAP16_ARATH (Q8L936) Putative clathrin assembly protein At4g40080| Length = 365 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 401 PPRPPTHRGMALAQMAGCGSRASAPS 324 P PP +R +A+ AG GSRA+A S Sbjct: 49 PSTPPGNRHLAVILSAGTGSRATASS 74
>SOX10_CHICK (Q9W757) Transcription factor SOX-10 (cSOX10)| Length = 461 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -1 Query: 141 KMAHLEHPIPWHGSPKQPSHPTY 73 K AHL+H P GSP HP + Sbjct: 201 KNAHLDHRHPGEGSPMSDGHPEH 223
>ZBT34_HUMAN (Q8NCN2) Zinc finger and BTB domain-containing protein 34| Length = 500 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +2 Query: 161 CGMNRKPGYGAQLRANLEPTKGVGRLRQQDGGHGSRNPLRSV 286 C R+P + LR P+K + R R Q+ GH R SV Sbjct: 168 CSQGRQPTASSDLRMETTPSKAL-RSRLQEEGHSDRGSSGSV 208
>FINC_PLEWA (Q91289) Fibronectin (FN) (Fragment)| Length = 1328 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 113 GIGCSKWAIFGKQNWRCGMNRKPGYG 190 G CS G+Q WRC R+PG G Sbjct: 1265 GAICSCTCYGGQQGWRCDNCRRPGAG 1290
>YADA_YERPS (P10858) Adhesin yadA precursor| Length = 432 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%) Frame = -3 Query: 172 VHPASPVLLTKN------GPLGAPDSVARLTEAAEPSYL 74 ++PA P+L +N GP G ARL EA +P L Sbjct: 55 LYPAKPILRQENPKLPPRGPQGPEKKRARLAEAIQPQVL 93
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -1 Query: 153 FCLPKMAHLEHPIPWHGSPKQPSHPTYLKFENRSRTL 43 F P+ H E W+ KQPS+P+ ++ NR+RTL Sbjct: 120 FMPPEKVHKELFKDWNIPFKQPSYPSVKRY-NRNRTL 155
>CRBB1_CHICK (P07530) Beta crystallin B1 (Beta-35)| Length = 238 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/67 (29%), Positives = 28/67 (41%) Frame = -2 Query: 281 SLADFDFHDHRPAVLIDQHPLWVLG*RAVGHRNPASGSSRIASSAYQKWPTWSTRFRGTA 102 +LAD F D +V++ P WV A N + Y +W TWS+ +R Sbjct: 69 NLADCGF-DRVRSVIVSSGP-WV----AYEQANMRGEMFILEKGEYPRWDTWSSSYRSDC 122 Query: 101 HRSSRAI 81 S R I Sbjct: 123 FMSMRPI 129 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,121,798 Number of Sequences: 219361 Number of extensions: 1449733 Number of successful extensions: 3781 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3640 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3779 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
