Clone Information

BLAST Search Result

Clone Name	bastl39a09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	YHU9_YEAST (P32900) Hypothetical 81.8 kDa protein in IMP3-SPO12 ...	34	0.14
2	CET1_CANGA (Q6FUZ2) mRNA capping enzyme beta subunit (EC 3.1.3.3...	33	0.32
3	FLIF_BUCAP (Q8KA45) Flagellar M-ring protein	33	0.42
4	YKR1_CAEEL (P34307) Hypothetical protein C06G4.1 in chromosome III	33	0.42
5	CHS5_YEAST (Q12114) Chitin biosynthesis protein CHS5 (Protein CAL3)	33	0.42
6	PTM3C_BACSU (P42956) PTS system mannitol-specific EIICBA compone...	32	0.55
7	RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-assoc...	32	0.71
8	YMH5_CAEEL (P34472) Hypothetical C-type lectin protein F58A4.5 p...	32	0.71
9	YE38_SCHPO (O13892) Hypothetical protein C20G4.08 in chromosome I	32	0.93
10	ESCO1_HUMAN (Q5FWF5) N-acetyltransferase ESCO1 (EC 2.3.1.-) (Est...	32	0.93
11	STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoi...	31	1.2
12	FYV1_DROME (O96838) Putative FYVE finger-containing phosphoinosi...	31	1.2
13	PMPC_CHLTR (O84419) Probable outer membrane protein pmpC precurs...	31	1.6
14	KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precu...	30	2.1
15	CP190_DROME (Q24478) Centrosome-associated zinc finger protein C...	30	2.7
16	MRP4_STRPY (P30141) Fibrinogen- and Ig-binding protein precursor...	30	2.7
17	PTP2_STYPL (P28194) Tyrosine-protein phosphatase 2 (EC 3.1.3.48)...	30	2.7
18	CLPB_RICPR (Q9ZEA9) Chaperone clpB	30	2.7
19	PRP28_CANAL (Q59W52) Pre-mRNA splicing ATP-dependent RNA helicas...	30	3.5
20	SYFB_CHLAB (Q5L6W7) Phenylalanyl-tRNA synthetase beta chain (EC ...	30	3.5
21	KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precu...	29	4.6
22	GIT1_HUMAN (Q9Y2X7) ARF GTPase-activating protein GIT1 (G protei...	29	4.6
23	ECM3_YEAST (Q99252) Extracellular matrix protein 3	29	4.6
24	T240L_HUMAN (Q71F56) Thyroid hormone receptor-associated protein...	29	4.6
25	RAD50_METJA (Q58718) DNA double-strand break repair rad50 ATPase	29	6.0
26	CYAA_YEAST (P08678) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophos...	29	6.0
27	SLIP1_DROME (Q8MR31) Slo-interacting protein 1 (dSLIP1)	29	6.0
28	TR19L_MOUSE (Q8BX43) Tumor necrosis factor receptor superfamily ...	29	6.0
29	SMC4_MOUSE (Q8CG47) Structural maintenance of chromosomes 4-like...	29	6.0
30	MUTL_BACHD (Q9KAC1) DNA mismatch repair protein mutL	29	6.0
31	MX1_CANFA (Q9N0Y3) Interferon-induced GTP-binding protein Mx1	29	6.0
32	SCN7A_HUMAN (Q01118) Sodium channel protein type 7 alpha subunit...	29	6.0
33	DIG1_YEAST (Q03063) Down-regulator of invasive growth 1 (Regulat...	29	6.0
34	SAS_DROME (Q04164) Putative epidermal cell surface receptor prec...	29	6.0
35	GIT1_MOUSE (Q68FF6) ARF GTPase-activating protein GIT1 (G protei...	28	7.9
36	TAF12_YEAST (Q03761) Transcription initiation factor TFIID subun...	28	7.9
37	HIBN_XENLA (P06180) Histone-binding protein N1/N2	28	7.9
38	SPO15_SCHPO (Q10411) Sporulation-specific protein 15	28	7.9
39	RGS4_MOUSE (O08899) Regulator of G-protein signaling 4 (RGS4)	28	7.9
40	Y4LA_RHISN (P55541) Putative short-chain type dehydrogenase/redu...	28	7.9
41	SYF2_ASPFU (Q4WPM6) Pre-mRNA-splicing factor syf2	28	7.9
42	DAN1_YEAST (P47178) Cell wall protein DAN1 precursor (Covalently...	28	7.9
43	YL452_MIMIV (Q5UQQ0) Hypothetical protein L452	28	7.9

>YHU9_YEAST (P32900) Hypothetical 81.8 kDa protein in IMP3-SPO12 intergenic|
           region
          Length = 734

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
 Frame = +3

Query: 147 ERNSITSAEDLQQNEQKTSLLENVVKENVDSCTAENDKQ--NSSQPSVQYFLGSAASHEK 320
           E +   +A D+ Q E +   ++N+V+  + S    N+    N+  P  ++ +  A     
Sbjct: 384 EEDKADNANDISQEENR---VDNIVQNPLPSIKINNNDNIDNNEVPEAKHLVKEALPLNN 440

Query: 321 INLLKSDISSAACDQKRSVQDGVKVNDSLSSKRRRIGA 434
            NL +     A   ++  VQD + VND+ ++   RI +
Sbjct: 441 TNLAEYGPEMAQSQKQYPVQDTLTVNDTEAAPSNRIAS 478

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>CET1_CANGA (Q6FUZ2) mRNA capping enzyme beta subunit (EC 3.1.3.33)|
           (Polynucleotide 5'-triphosphatase) (mRNA
           5'-triphosphatase) (TPase)
          Length = 602

 Score = 33.1 bits (74), Expect = 0.32
 Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
 Frame = +3

Query: 54  NISVSNKKDESAV-PEVISSASVRR--TSEMHSTERNSITSAEDLQQNEQKTSLLE---- 212
           NIS +++KD S   P++     V+   T+E       SIT+AED   N+ K + +E    
Sbjct: 137 NISATDRKDSSEEKPDLTGPELVKEPDTNEYKRPSIQSITNAEDTTYNDHKAAGMEKTSN 196

Query: 213 -----NVVKENVDSCTAENDKQNSSQPSVQYFLGSAASHEKINLLKSDISSAACDQKRSV 377
                N++ +++D    E  K  +          +   +++ N  K +++ +  ++   +
Sbjct: 197 KHSLPNILSDSIDETVTEEHKPKTETEQ------TITEYQQENKQKDNVNESNSEETHDI 250

Query: 378 QD 383
           ++
Sbjct: 251 KN 252

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>FLIF_BUCAP (Q8KA45) Flagellar M-ring protein|
          Length = 556

 Score = 32.7 bits (73), Expect = 0.42
 Identities = 23/101 (22%), Positives = 48/101 (47%)
 Frame = +3

Query: 54  NISVSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSLLENVVKENV 233
           N  ++N+K+E+   E+    S     +++ST  ++    + + QN Q  ++L +      
Sbjct: 303 NDKINNRKEENKPDELFPQTSFSSNKDLNSTTYSNKKIKKSIIQNNQDNNILHS------ 356

Query: 234 DSCTAENDKQNSSQPSVQYFLGSAASHEKINLLKSDISSAA 356
           +S  + +D       ++ Y L  + SH K+N+ +    SAA
Sbjct: 357 NSAISHDD-------TINYELNHSLSHTKMNIGEIKRLSAA 390

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>YKR1_CAEEL (P34307) Hypothetical protein C06G4.1 in chromosome III|
          Length = 886

 Score = 32.7 bits (73), Expect = 0.42
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +3

Query: 36  ALTKACNISVSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSLLEN 215
           ++ K C I +   ++   +   +S+A ++ T  +     NSI  A +  Q++ K  L E 
Sbjct: 641 SIEKYCGIIIEKMREVFGIGGYVSTAPLKLTGSV-----NSIHMARETMQSKTKRFLDEE 695

Query: 216 VVKENVDSCT 245
             KE V+ CT
Sbjct: 696 KFKETVEHCT 705

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>CHS5_YEAST (Q12114) Chitin biosynthesis protein CHS5 (Protein CAL3)|
          Length = 671

 Score = 32.7 bits (73), Expect = 0.42
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
 Frame = +3

Query: 78  DESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSLLENV--------VKENV 233
           ++++ P   +   V+ T+E  +   +     ED++   +     E+V        VK   
Sbjct: 528 EDTSEPVEDAGEPVQETNEFTTDIASPRHQEEDIELEAEPKDATESVAVEPSNEDVKPEE 587

Query: 234 DSCTAENDKQNSSQPSVQYFLGSAASHEKINLLKSDISSAACDQKRSVQDGVKVNDSLSS 413
               AE+D  N S+ +     G + +H+K     S  SSA  +++ + +  V  +D LS+
Sbjct: 588 KGSEAEDDINNVSKEAAS---GESTTHQKTEASASLESSAVTEEQETTEAEVNTDDVLST 644

Query: 414 KRRR 425
           K  +
Sbjct: 645 KEAK 648

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>PTM3C_BACSU (P42956) PTS system mannitol-specific EIICBA component (EIICBA-Mtl)|
           (EII-Mtl) [Includes: Mannitol permease IIC component
           (PTS system mannitol-specific EIIC component);
           Mannitol-specific phosphotransferase enzyme IIB
           component (EC 2.7.1.69) (P
          Length = 610

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 27/156 (17%)
 Frame = +3

Query: 60  SVSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAED-----------LQQNEQKTSL 206
           S+  KK ++A      ++  R  SE+     N I  + D           + +N+ K   
Sbjct: 359 SMKGKKSQAAAALEAETSQSREASELSPESANKIIFSCDSGMGSSAMGASILRNKVKKRS 418

Query: 207 LENVVKENVDSCTAEND---------------KQNSSQPSVQYFLGSAASHEKINLLKSD 341
           L +V    +++  ++ D                 N++  SV  FL S    E I  LKS+
Sbjct: 419 LTSVTNTAINNLPSDADIVITHKDLTDRAKAKLPNATHISVDNFLNSPKYDELIEKLKSN 478

Query: 342 ISSAACDQKRSVQDGVKVNDSLSSKRRRIG-ADQTL 446
           +         + +  +K+N ++SSK   I  A QTL
Sbjct: 479 LIEREYCHASTRKGNIKLNQTVSSKEEAIKLAGQTL 514

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>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular|
            protein of testis) (Proliferation potential-related
            protein) (Protein P2P-R)
          Length = 1790

 Score = 32.0 bits (71), Expect = 0.71
 Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
 Frame = +3

Query: 144  TERNSITSAEDLQQNEQKTSLLENVVKENVDSCTAENDKQNSSQPSVQYFLGSAASHEKI 323
            +E   + + + +Q   + +S+++NV  +   S TA+  ++ S QP     L   ASHE +
Sbjct: 1329 SEEEDVKTTQPIQSVGKPSSIIKNVTTK--PSATAKYTEKESEQPEKLQKLPKEASHELM 1386

Query: 324  -NLLKSDISSAACDQKRSVQDGVKVNDSLSSKRRRIGA 434
             + L+S   SA+ ++ R+       ++  +  +R+ GA
Sbjct: 1387 QHELRSSKGSASSEKGRAKDREHSGSEKDNPDKRKSGA 1424

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>YMH5_CAEEL (P34472) Hypothetical C-type lectin protein F58A4.5 precursor|
          Length = 786

 Score = 32.0 bits (71), Expect = 0.71
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +3

Query: 111 ASVRRTSEMHSTERNSITSAEDLQQNEQKTSLLENVVKENVDSCTAENDK-QNSSQPSVQ 287
           +S RR S   +T+  S + +E  Q +EQ         K +  S ++  D+ ++S+  +++
Sbjct: 381 SSKRRESSSSNTDSESASISESSQASEQAVMAAAMSAKSSKKSESSSKDESEDSASLNLE 440

Query: 288 YFLGSAASHEKINLLKSDISSAACDQK 368
               +AAS    +  KSD S  + DQK
Sbjct: 441 QKASAAASAALASKSKSDSSDQSKDQK 467

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>YE38_SCHPO (O13892) Hypothetical protein C20G4.08 in chromosome I|
          Length = 1076

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
 Frame = +3

Query: 66   SNKKDESAVPEVISSASVRRTSEMHSTE-------------RNSITSAEDLQQNEQKT-S 203
            +N+K   A+  V+SS     T ++  +               NS+ +A  L+ N +K  S
Sbjct: 757  ANEKHTEAILSVVSSTLTENTGKILESVVEKSMQVALKEEIANSVRNA--LKNNLEKIES 814

Query: 204  LLENVVKENVDSCTAENDKQNSSQPSVQYFLGSAASHEKINLLK 335
             LEN + E  +S   + DKQ SS   ++Y + + A  +K + +K
Sbjct: 815  FLENSIAELQNSVREDFDKQTSSLAQLRYSIQNVAHAQKESEVK 858

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>ESCO1_HUMAN (Q5FWF5) N-acetyltransferase ESCO1 (EC 2.3.1.-) (Establishment of|
           cohesion 1 homolog 1) (ECO1 homolog 1) (ESO1 homolog 1)
           (Establishment factor-like protein 1) (EFO1p) (hEFO1)
           (CTF7 homolog 1)
          Length = 840

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
 Frame = +3

Query: 141 STERNSITSAEDLQQNEQKTSLLENVVKENVDSCTAENDKQNSSQPSVQYFLGSAASHEK 320
           S ++NS T  +D Q+N  K S  +  +K    S +     Q   +  +      AAS++K
Sbjct: 19  SDDKNSETEIQDSQKNLAKKSGPKETIKSQAKSSSESKINQPELETRMSTRSSKAASNDK 78

Query: 321 -----------INLLKSDISSAACDQKRSVQDGVKVNDSLSSKRRRI 428
                      +     + +     QK+ V +  K N+ L+ + +R+
Sbjct: 79  ATKSINKNTVTVRGYSQESTKKKLSQKKLVHENPKANEQLNRRSQRL 125

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>STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoid prophage Rac|
          Length = 1120

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 5/141 (3%)
 Frame = +3

Query: 33  SALTKACNISVSNKKDESAVPEVISSASVRRTSEMHSTE--RNSITSAE--DLQQNEQKT 200
           +A TKA   S S    ES+     +SA   +TSE +++   +++ TSA     + +E  T
Sbjct: 175 TASTKATEASKSAAAAESSKSAAATSAGAAKTSETNASASLQSAATSASTATTKASEAAT 234

Query: 201 SLLENVV-KENVDSCTAENDKQNSSQPSVQYFLGSAASHEKINLLKSDISSAACDQKRSV 377
           S  +    KE   S         SS  S     G++A   K +   +  S  A  Q  S 
Sbjct: 235 SARDAAASKEAAKSSETNASSSASSAASSATAAGNSAKAAKTSETNARSSETAAGQSASA 294

Query: 378 QDGVKVNDSLSSKRRRIGADQ 440
             G K   + S+      A Q
Sbjct: 295 AAGSKTAAASSASAASTSAGQ 315

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>FYV1_DROME (O96838) Putative FYVE finger-containing phosphoinositide kinase|
           (EC 2.7.1.68) (1-phosphatidylinositol-4-phosphate
           5-kinase) (PIP5K) (PtdIns(4)P-5-kinase)
          Length = 1809

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
 Frame = +3

Query: 63  VSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSL------------ 206
           V      S  P+  ++ S+R  SE   T  +S T+AED + +++  +L            
Sbjct: 92  VETSSQSSVRPQPPTTLSIRTNSETRGTSTSSNTAAEDSETSDRVETLPLPTSEANQGRT 151

Query: 207 LENVVK--ENVDSCTAENDKQNSSQPSVQYF 293
           + NV+K   N+ +    ND +N     +Q F
Sbjct: 152 VSNVLKHISNIVATKNNNDLRNYKDTELQRF 182

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>PMPC_CHLTR (O84419) Probable outer membrane protein pmpC precursor|
           (Polymorphic membrane protein C)
          Length = 1770

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = +3

Query: 39  LTKACNISVSNKKDESAVPEVISSASVRRT-SEMHSTERNSITSAEDLQQNEQKTSLLEN 215
           +T     S  +    ++ PEV++SA + R  +        S+T AE  Q ++ +TS   +
Sbjct: 445 ITDTPESSTPSSSSPASTPEVVASAKINRFFASTAKPAAPSLTEAESDQTDQTETSDTNS 504

Query: 216 VVKENVDSCTAENDKQNSSQPSVQYFLGSAASHEKINLLK 335
            +  ++++       QN+S        G  A   +IN L+
Sbjct: 505 DIDVSIENILNVAINQNTSAKKGGAIYGKKAKLSRINNLE 544

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>KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precursor (KAHRP)|
           (KP)
          Length = 634

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
 Frame = +3

Query: 51  CNISVSNK-KDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSLL------ 209
           C    S K KD      V S  SV+   E H+ ++       +  +N++KT+ L      
Sbjct: 414 CEKKKSKKHKDNEDAESVKSKKSVKEKGEKHNGKKPCSKKTNEENKNKEKTNNLKSDGSK 473

Query: 210 ---------ENVVKEN--VDSCTAENDKQNSSQPSVQ 287
                    +N   EN  VDS +A+N   N++ P  +
Sbjct: 474 AHEKKENETKNTAGENKKVDSTSADNKSTNAATPGAK 510

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>CP190_DROME (Q24478) Centrosome-associated zinc finger protein CP190 (DMAP190)|
            (Protein enhancer of mod(mdg4)4-1)
          Length = 1096

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 34/126 (26%), Positives = 58/126 (46%)
 Frame = +3

Query: 12   DDVQVKFSALTKACNISVSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNE 191
            D VQ + +A T+A + SV+++ D   VP    S       E       +  + ED +  +
Sbjct: 971  DIVQSEENATTEALDRSVTDEDD--LVPPTQVSTEQMEIDE--PAAEKAAENNEDTRTAD 1026

Query: 192  QKTSLLENVVKENVDSCTAENDKQNSSQPSVQYFLGSAASHEKINLLKSDISSAACDQKR 371
            +K ++ E+   +  D  TAE     S++   +   G AAS +K+   KS IS    D + 
Sbjct: 1027 EKEAV-EDKPNQTQDVTTAEKPTLESAKAGDEATSGEAASVDKV---KSLISEWGDDDED 1082

Query: 372  SVQDGV 389
              ++GV
Sbjct: 1083 EDENGV 1088

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>MRP4_STRPY (P30141) Fibrinogen- and Ig-binding protein precursor (MRP protein)|
          Length = 388

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 18/112 (16%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
 Frame = +3

Query: 123 RTSEMHSTERNSITSAEDLQQNEQKTSLLENVV----------KENVDSCTAENDKQNSS 272
           + +E+ + ++   +  E++ + + + + LEN++          +  +D+ TAE  K  S 
Sbjct: 164 KNAEIEALKQQDASKTEEIAKLQSEAATLENLLGSAKRELTELQAKLDTATAEKAKLESQ 223

Query: 273 QPSVQYFLGSAASHEKINLLKSDISSAACDQKRSVQDGVKVNDSLSSKRRRI 428
             +++  LGSA    ++  L++ + +A  ++++       +   L + ++ +
Sbjct: 224 VTTLENLLGSA--KRELTDLQAKLDAANAEKEKLQSQAATLEKQLEATKKEL 273

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>PTP2_STYPL (P28194) Tyrosine-protein phosphatase 2 (EC 3.1.3.48) (Fragment)|
          Length = 127

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 147 ERNSITSAEDLQQNEQKTSLLENVVKENVDSCTAENDKQNSSQPSVQY 290
           E   +TS    QQ      L E  V +N D  T +ND+Q   +P V+Y
Sbjct: 39  ETTQVTSYGGYQQRILAVKLAEEEVYDNDDG-TEQNDEQTEEEPEVRY 85

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>CLPB_RICPR (Q9ZEA9) Chaperone clpB|
          Length = 858

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 8/149 (5%)
 Frame = +3

Query: 6   KLDDVQVKFSALTKACNISVSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQ 185
           ++  ++++ +AL K        + DE +  ++ S     +  E  S + N+   AE   +
Sbjct: 419 RIIQIKIELAALKK--------ENDEHSKKKITSLTEELKKLESKSYDMNTKWQAEK-SK 469

Query: 186 NEQKTSLLENVVKENVDSCTAENDKQNSSQPSVQYF--------LGSAASHEKINLLKSD 341
            +Q   L E + +  +D   AE D   +    ++Y         L  A + +   LLK  
Sbjct: 470 LQQAQKLKEELEQARIDLERAERDANLAKASELKYGIIPEIMNKLQEAENMDNKGLLKEI 529

Query: 342 ISSAACDQKRSVQDGVKVNDSLSSKRRRI 428
           +S +      S   G+ ++  LSS+R R+
Sbjct: 530 VSESDIASIISRITGIPIDTMLSSERERL 558

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>PRP28_CANAL (Q59W52) Pre-mRNA splicing ATP-dependent RNA helicase PRP28 (EC|
           3.6.1.-)
          Length = 581

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +3

Query: 66  SNKKDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSLLENVVKENVDSCT 245
           S+ +DES  P  I  A  R   E+   +++ I S     + +   +   N       + T
Sbjct: 15  SSDEDESVAPVYIPKAK-RAKLEVLKAKKSQIASRLSTHKQQSAPTTTTNTSTTASTTTT 73

Query: 246 AENDKQNSSQPSVQ 287
           A  +  N+S+PS+Q
Sbjct: 74  ATTNNTNNSKPSIQ 87

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>SYFB_CHLAB (Q5L6W7) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 794

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 163 LRPKICNKMN-KRPLFLRMLLKKMLIHVQQKTISR 264
           L P++C K + K P+F   L    L+H Q+K I+R
Sbjct: 658 LHPQLCKKAHIKHPVFFAELSVDSLLHTQKKAIAR 692

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>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)|
          Length = 657

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 18/74 (24%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
 Frame = +3

Query: 72  KKDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSLLENVVKEN--VDSCT 245
           KK E ++ E  + A+ + T ++   ++ + + ++  + +E+K +  +N   EN  VDS +
Sbjct: 441 KKREKSIMEK-NHAAKKLTKKIKIKKKTNNSKSDGSKAHEKKENETKNTAGENKKVDSTS 499

Query: 246 AENDKQNSSQPSVQ 287
           A+N   N++ P  +
Sbjct: 500 ADNKSTNAATPGAK 513

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>GIT1_HUMAN (Q9Y2X7) ARF GTPase-activating protein GIT1 (G protein-coupled|
           receptor kinase-interactor 1) (GRK-interacting protein
           1) (Cool-associated and tyrosine-phosphorylated protein
           1) (Cat-1)
          Length = 761

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
 Frame = +3

Query: 96  EVISSASVRRTSEMHSTERN----SITSAEDLQQNEQKTSLL--ENVVKENVDSCTAEND 257
           +++S A  R+  +  S+  +    S+ S  DL       S+   E+  +E + S  A   
Sbjct: 346 DILSEAKRRQQGKSLSSPTDNLELSLRSQSDLDDQHDYDSVASDEDTDQEPLRSTGATRS 405

Query: 258 KQNSSQPSVQYFLGSAASHEKINLLKSDISSAACDQKRSVQDGVKVNDSLSSKRRRI 428
            +  S  S     G+    E + L K+  +S A      VQ  +KVN SLS + RR+
Sbjct: 406 NRARSMDSSDLSDGAVTLQEYLELKKALATSEA-----KVQQLMKVNSSLSDELRRL 457

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>ECM3_YEAST (Q99252) Extracellular matrix protein 3|
          Length = 613

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = +3

Query: 48  ACNISVSNKKDESAVPEVISSASVRRTSEMHSTERNSIT-SAEDLQQNEQKTSLLENVVK 224
           A ++S  N        + I+  +  RTS +H+  RNSIT S   +   E     + ++++
Sbjct: 276 AQSVSELNDPTYRTRSQPIAYTTESRTSHVHNNRRNSITGSLRSIDMRELPAEGMSDLIR 335

Query: 225 E--NVDSCTAENDKQNSSQ--PSV 284
           E  NVD          SSQ  PSV
Sbjct: 336 EYSNVDQYGRRRKSSISSQGAPSV 359

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>T240L_HUMAN (Q71F56) Thyroid hormone receptor-associated protein 2 (Thyroid|
            hormone receptor-associated protein complex 240 kDa
            component-like)
          Length = 2210

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +3

Query: 42   TKACNISVSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSLLENVV 221
            + + N + S+    S+VP V SSAS    S++ +T  +  + +    QN     +  +  
Sbjct: 1568 SSSTNPAASSSASGSSVPPVSSSASAPGISQISTTSSSGFSGSVG-GQNPSTGGISADRT 1626

Query: 222  KENVDSCTAENDK-QNSSQPS 281
            + N+  C  + D  Q+SSQPS
Sbjct: 1627 QGNI-GCGGDTDPGQSSSQPS 1646

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>RAD50_METJA (Q58718) DNA double-strand break repair rad50 ATPase|
          Length = 1005

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +3

Query: 6   KLDDVQVKFSALTKACNISVSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAED-LQ 182
           +L++  V+++ LT      +  KK   ++ + I+    R    +  T+   I S E+ L+
Sbjct: 399 ELEEKAVEYNKLTLEYITLLQEKK---SIEKNINDLETRINKLLEETKNIDIESIENSLK 455

Query: 183 QNEQKTSLLENVVKENVD 236
           + E+K  +LEN+ KE ++
Sbjct: 456 EIEEKKKVLENLQKEKIE 473

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>CYAA_YEAST (P08678) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
            (Adenylyl cyclase)
          Length = 2026

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 25/76 (32%), Positives = 37/76 (48%)
 Frame = +3

Query: 27   KFSALTKACNISVSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSL 206
            + S LTK   +SV+  K E   PE +S     RT ++HS   N+I    D  +N + TSL
Sbjct: 1082 EISKLTKLVFLSVARNKLEYIPPE-LSQLKSLRTLDLHS---NNIRDFVDGMENLELTSL 1137

Query: 207  LENVVKENVDSCTAEN 254
              N+      + + EN
Sbjct: 1138 --NISSNAFGNSSLEN 1151

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>SLIP1_DROME (Q8MR31) Slo-interacting protein 1 (dSLIP1)|
          Length = 767

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = +3

Query: 60  SVSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSLLENVVKENVDS 239
           +V +K D+  +  V S   +   S M S E   I        N + +SL +N+++++  S
Sbjct: 305 NVVDKLDKVLLTHVKSLEELSNKSAMQSDECYHIPEKNSSDSNVKISSLAKNIIEQSTKS 364

Query: 240 CTAENDKQNSS 272
           C+    + N++
Sbjct: 365 CSKIKLRPNAN 375

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>TR19L_MOUSE (Q8BX43) Tumor necrosis factor receptor superfamily member 19L|
           precursor
          Length = 436

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +3

Query: 189 EQKTSLLENVVKENVDSCTAENDKQNSSQPSV----QYFLGSAASHEK 320
           EQ+TS L + VK   ++  +E D  +S QP +    +  LGS  SH K
Sbjct: 363 EQRTSSLLSEVKTITEAGPSEGDLPDSPQPGLPPEQRALLGSGGSHTK 410

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>SMC4_MOUSE (Q8CG47) Structural maintenance of chromosomes 4-like 1 protein|
           (Chromosome-associated polypeptide C) (XCAP-C homolog)
          Length = 1286

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
 Frame = +3

Query: 9   LDDVQVKFS---ALTKACNISVSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAEDL 179
           L+DVQV+     A +KA  +    +KD+  V E+ S  +  +T    +T RN+ +  ++ 
Sbjct: 393 LEDVQVREKLKHATSKAKKLEKQLQKDKEKVEELKSVPAKSKTVINETTTRNN-SLEKER 451

Query: 180 QQNEQKTSLLENVVKENVDSCTAENDKQNSSQPSVQYFLGSAASHEKINLLKSDI 344
           ++ E+K   + + +K+       E + Q          +  A S  ++   + DI
Sbjct: 452 EKEEKKLKEVMDSLKQETQGLQKEKEIQEKELMGFNKSVNEARSKMEVAQSELDI 506

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>MUTL_BACHD (Q9KAC1) DNA mismatch repair protein mutL|
          Length = 637

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +3

Query: 75  KDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSLLENVVKENVDS--CTA 248
           K E  +PE       ++ SE  S   +  TSA+  +     +S  EN  + ++D      
Sbjct: 326 KKEQLIPEATKPTGGKQKSEQLSFTLDDFTSAKPSEDRGSTSSNEENEQRSSIDKNVLFQ 385

Query: 249 ENDKQNSSQPSVQYFLGSAASHE 317
           E  K ++  PS+     ++AS E
Sbjct: 386 EERKLSNDLPSINMVREASASVE 408

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>MX1_CANFA (Q9N0Y3) Interferon-induced GTP-binding protein Mx1|
          Length = 657

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 204 LLENVVKENVDSCTAENDKQNSSQPSVQ----YFLGSAASHEKINLLKSDISS 350
           LLEN +KEN +  T E  K  S  P  +    +FL      +K+N    DISS
Sbjct: 337 LLENQIKENHEKITEELQKYGSDVPEDEHEKMFFL-----IDKLNAFNQDISS 384

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>SCN7A_HUMAN (Q01118) Sodium channel protein type 7 alpha subunit (Sodium channel|
            protein type VII alpha subunit) (Putative voltage-gated
            sodium channel alpha subunit Nax) (Sodium channel
            protein, cardiac and skeletal muscle alpha-subunit)
          Length = 1682

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +3

Query: 78   DESAVPEVISS---ASVRRTSEMHSTERNSITSAEDLQQNEQKTSLLENVVKENVDSCTA 248
            +E  V E IS    + +  T +    +  S  + ++  +NE ++ +    V E V   + 
Sbjct: 782  NEVYVKEDISDHTLSELSNTQDFLKDKEKSSGTEKNATENESQSLIPSPSVSETVPIASG 841

Query: 249  ENDKQNSSQPSVQYFLGSAASHEKI 323
            E+D +N     +Q   G   S EKI
Sbjct: 842  ESDIENLDNKEIQSKSGDGGSKEKI 866

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>DIG1_YEAST (Q03063) Down-regulator of invasive growth 1 (Regulator of sterile|
           twelve 1) (Regulator of STE12 protein 1)
          Length = 452

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 216 VVKENVDSCTAENDKQNSSQPSVQYFLGSAASHEKINLLKSDIS 347
           V  +NV S  A+  + +  QP VQY LG A+S + I +  S  S
Sbjct: 135 VANQNVKSAPAQVTQHSKFQPRVQY-LGKASSRQSIQVNNSSNS 177

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>SAS_DROME (Q04164) Putative epidermal cell surface receptor precursor|
           (Stranded at second protein)
          Length = 1693

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 25/93 (26%), Positives = 38/93 (40%)
 Frame = +3

Query: 33  SALTKACNISVSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSLLE 212
           S  ++A  + +++ +DE+A   +  S SV           N +     LQQ +QK    E
Sbjct: 375 STTSRARAMHMNDPEDEAATTIMPDSESVPVI--------NIVEGQHMLQQEDQKDEEEE 426

Query: 213 NVVKENVDSCTAENDKQNSSQPSVQYFLGSAAS 311
            VVKE+  S T E     +       F G   S
Sbjct: 427 GVVKESESSSTTEASTTTTEPSPFVAFAGEGRS 459

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>GIT1_MOUSE (Q68FF6) ARF GTPase-activating protein GIT1 (G protein-coupled|
           receptor kinase-interactor 1) (GRK-interacting protein
           1)
          Length = 770

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
 Frame = +3

Query: 96  EVISSASVRRTSEMHSTERNSIT------SAEDLQQNEQKTSLLENVVKENVDSCTAEND 257
           +++S A  R+  +  S+  +++       S  D Q +    +  E+  +E + S  A  +
Sbjct: 355 DILSEAKRRQQGKSLSSPTDNLELSARSQSELDDQHDYDSVASDEDTDQEPLPSAGATRN 414

Query: 258 KQNSSQPSVQYFLGSAASHEKINLLKSDISSAACDQKRSVQDGVKVNDSLSSKRRRI 428
            +  S  S     G+    E + L K+  +S A      VQ  +KVN SLS + RR+
Sbjct: 415 NRARSMDSSDLSDGAVTLQEYLELKKALATSEA-----KVQQLMKVNSSLSDELRRL 466

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>TAF12_YEAST (Q03761) Transcription initiation factor TFIID subunit 12|
           (TBP-associated factor 12) (TBP-associated factor 61
           kDa) (TAFII-61) (TAFII61) (TAFII-68) (TAFII68)
          Length = 539

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
 Frame = +3

Query: 120 RRTSEMHSTERNSITSAEDL--QQNEQKTSLLENVVKENVDSCTAENDKQNSSQPSVQYF 293
           R+ S  +STE  S+T  + L  QQ +Q T    N  + NV++   E  K   +       
Sbjct: 283 RKISSSNSTEIPSVTGPDALKSQQQQQNTITATNNPRGNVNTSQTEQSKAKVTN------ 336

Query: 294 LGSAASHEKINLLKSDISSAACDQKRSVQDGVKVNDSLSSK 416
           + + AS      + ++ISS+     +  +  + +++++S+K
Sbjct: 337 VNATAS------MLNNISSSKSAIFKQTEPAIPISENISTK 371

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>HIBN_XENLA (P06180) Histone-binding protein N1/N2|
          Length = 589

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
 Frame = +3

Query: 57  ISVSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSLLENVVKENVD 236
           + V  K+ E++V E++     +   E+     +     ED ++ ++  ++ E  +KE + 
Sbjct: 432 MDVLTKQLEASVGELVDEVK-KEMDELKDLLPDIKEKIEDSKEAQKNATVTEKALKETLV 490

Query: 237 SCTAENDKQNSSQPSVQYFLGSAASHEKINLLKSDISSAACDQKRSVQDG-VKVNDSLSS 413
             ++   K+N S  S      S  S   +    SDIS     ++++ ++  +K  D+  S
Sbjct: 491 GGSSGFSKENGSTSSSSAVEKSGDSTVPVTNCVSDISHLVRKKRKTEEESPLKDKDAKKS 550

Query: 414 KRRRI 428
           K+  +
Sbjct: 551 KQEPV 555

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>SPO15_SCHPO (Q10411) Sporulation-specific protein 15|
          Length = 1957

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 20/95 (21%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
 Frame = +3

Query: 96  EVISSASVRRTSEMHSTERNSITSAEDLQQNEQK---TSLLENVVKENVDSCTAENDKQN 266
           E  + + +++  ++ S E+N  T  EDL+++E+    + L    ++E +D+   +++   
Sbjct: 671 EESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHETLE 730

Query: 267 SSQPSVQYFLGSAASHEKINLLKSDISSAACDQKR 371
           + +  +   L  A +   I  L S+++ ++ D KR
Sbjct: 731 AQRNDLHSSLSDAKNTNAI--LSSELTKSSEDVKR 763

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>RGS4_MOUSE (O08899) Regulator of G-protein signaling 4 (RGS4)|
          Length = 205

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 228 NVDSCTAENDKQNSSQPSVQYFLGSAASHEKINLLKSD 341
           N+DSCT E   +N  QP++  F    A  +  NL++ D
Sbjct: 128 NLDSCTREETSRNMLQPTITCF--DEAQKKIFNLMERD 163

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>Y4LA_RHISN (P55541) Putative short-chain type dehydrogenase/reductase y4lA (EC|
           1.-.-.-)
          Length = 278

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/70 (21%), Positives = 36/70 (51%)
 Frame = +3

Query: 3   GKLDDVQVKFSALTKACNISVSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQ 182
           GK+  V    + + KAC ++++ +     V ++  SA++  T+++ +   N++  A D+ 
Sbjct: 6   GKVAVVTGAGAGIGKACALAIAREGGRVVVADLDGSAAIACTAQIAAEAGNALAMAMDIA 65

Query: 183 QNEQKTSLLE 212
             +   +L E
Sbjct: 66  DAQAVAALFE 75

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>SYF2_ASPFU (Q4WPM6) Pre-mRNA-splicing factor syf2|
          Length = 480

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
 Frame = +3

Query: 33  SALTKACNISVSNKKDESAVP-EVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSLL 209
           SA   + + + SN+    A P E  +S   ++ +     E     +A   +Q +++   L
Sbjct: 10  SAAKPSDDNAASNQTQSGAAPAEPAASEEPQQKTSSEKLESKEDDAAAKARQRQERFKAL 69

Query: 210 E----NVVKENVDSCTAENDKQNSSQPSVQYFLGSAASHEKINLLKSDISSAACDQKR 371
           +    N  + N+    AE  +  ++ P++   L    +    NLLK+D  +A  D +R
Sbjct: 70  QARAKNAAERNLKETAAETQRL-ATDPALLSSLSRKHAFASHNLLKADTEAAGEDFER 126

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>DAN1_YEAST (P47178) Cell wall protein DAN1 precursor (Covalently-linked cell|
           wall protein 13)
          Length = 298

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
 Frame = +3

Query: 39  LTKACNISVSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSLLENV 218
           L  A + +++N    +AVP   + AS   TSE  S    S +S+E   +     +  +  
Sbjct: 104 LMGAISEALANGGIATAVPASTTEASSTSTSEASSAATESSSSSESSAETSSNAASTQAT 163

Query: 219 VKENVDSC--TAENDKQNSSQPSVQYFLGSAASHEKINLLKSDISS 350
           V     S   T  +  ++S   SV   + S+AS        S  SS
Sbjct: 164 VSSESSSAASTIASSAESSVASSVASSVASSASFANTTAPVSSTSS 209

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>YL452_MIMIV (Q5UQQ0) Hypothetical protein L452|
          Length = 502

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
 Frame = +3

Query: 30  FSALTKACNISVSNKKDESAVPEVISSASVRRTSEMHSTERNSITSAEDLQQNEQKTSLL 209
           FS    +   S SNK   S       +++ R ++   S  RNS  S +   +N +  +L 
Sbjct: 239 FSGRNASARNSASNKNSASRSSVSNKNSASRSSASRSSVSRNS-ESIKSSSRNSESRNLE 297

Query: 210 ENVVKENVDSCTAENDKQNSSQPSVQYFLGSAASHEKINLLKSDISSAACDQKRSVQD-- 383
            N   +N  S   E++K ++S+ S      S  S  K +  ++  ++ + +Q+  + +  
Sbjct: 298 SN---KNSTSRNLESNKNSASRNSASRNSTSIKSDSKNSDSRNSQTNKSKNQRGGLSEIK 354

Query: 384 GVKVND 401
           G+ V D
Sbjct: 355 GIPVTD 360


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,721,714
Number of Sequences: 219361
Number of extensions: 934029
Number of successful extensions: 3421
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 3357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3419
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result