ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl39a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
2dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
3dbj|AK121644.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
4ref|XM_545588.2| PREDICTED: Canis familiaris similar to aldehyde... 42 1.5
5emb|CR376789.4| Zebrafish DNA sequence from clone DKEYP-87A2 in ... 42 1.5
6emb|AL136999.26| Human DNA sequence from clone RP11-187E23 on ch... 42 1.5
7emb|BX324205.5| Zebrafish DNA sequence from clone CH211-10K1 in ... 42 1.5
8emb|BX324116.7| Zebrafish DNA sequence from clone CH211-114G7 in... 42 1.5
9emb|AL844532.18| Mouse DNA sequence from clone RP23-221O14 on ch... 42 1.5
10emb|CR392368.7| Zebrafish DNA sequence from clone DKEY-86E18 in ... 42 1.5
11gb|DQ150104.1| Canis familiaris aldehyde oxidase 2 mRNA, complet... 42 1.5
12gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
13gb|AC141429.4| Mus musculus BAC clone RP23-56L6 from chromosome ... 40 6.0
14gb|AC066608.6| Homo sapiens chromosome 3 clone RP11-785A7 map 3p... 40 6.0
15gb|AC123951.3| Mus musculus BAC clone RP23-166M23 from 18, compl... 40 6.0
16emb|AL591543.22| Human DNA sequence from clone RP13-198D9 on chr... 40 6.0
17emb|AL590705.9| Human DNA sequence from clone RP11-498P14 on chr... 40 6.0
18emb|AL450386.17| Human DNA sequence from clone RP11-466B20 on ch... 40 6.0
19ref|XM_794138.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.0
20emb|AL596382.12| Mouse DNA sequence from clone RP23-337J7 on chr... 40 6.0
21emb|BX511209.11| Zebrafish DNA sequence from clone CH211-129A6 i... 40 6.0
22gb|AC093267.2| Homo sapiens chromosome 5 clone RP11-280F11, comp... 40 6.0
23gb|AC118470.2| Homo sapiens chromosome 1 clone RP11-634B7, compl... 40 6.0
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
25gb|AC084456.1|AC084456 Caenorhabditis briggsae cosmid CB029P18, ... 40 6.0
26gb|AC083950.4| Homo sapiens BAC clone RP11-240P14 from 2, comple... 40 6.0
27gb|AC091951.3| Homo sapiens chromosome 5 clone RP11-404K5, compl... 40 6.0
28dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 40 6.0
29emb|BX000997.10| Zebrafish DNA sequence from clone CH211-151C7 i... 40 6.0
30dbj|AK107313.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
31gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 6.0
32gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
33emb|AL954700.6| Mouse DNA sequence from clone RP24-322F9 on chro... 40 6.0
34gb|AC018842.6| Homo sapiens chromosome 3 clone RP11-82O3 map 3p,... 40 6.0

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/86 (86%)
 Strand = Plus / Plus

                                                                            
Query: 312      catgagaaaattaatttgctcaagtcagacataagcagtgctgcttgtgaccagaagagg 371
                ||||||||||||||| ||||| |||||||   ||| ||||||||||||| ||||||||||
Sbjct: 18229780 catgagaaaattaatctgctccagtcagaaggaagaagtgctgcttgtggccagaagagg 18229839

                                          
Query: 372      tctgttcaagatggagttaaagtaaa 397
                || | |  |||||||||| |||||||
Sbjct: 18229840 tcagatgcagatggagttcaagtaaa 18229865



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>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0556A05
          Length = 158189

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/86 (86%)
 Strand = Plus / Plus

                                                                         
Query: 312   catgagaaaattaatttgctcaagtcagacataagcagtgctgcttgtgaccagaagagg 371
             ||||||||||||||| ||||| |||||||   ||| ||||||||||||| ||||||||||
Sbjct: 78504 catgagaaaattaatctgctccagtcagaaggaagaagtgctgcttgtggccagaagagg 78563

                                       
Query: 372   tctgttcaagatggagttaaagtaaa 397
             || | |  |||||||||| |||||||
Sbjct: 78564 tcagatgcagatggagttcaagtaaa 78589



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>dbj|AK121644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057B05, full
            insert sequence
          Length = 4292

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/86 (86%)
 Strand = Plus / Plus

                                                                        
Query: 312  catgagaaaattaatttgctcaagtcagacataagcagtgctgcttgtgaccagaagagg 371
            ||||||||||||||| ||||| |||||||   ||| ||||||||||||| ||||||||||
Sbjct: 2413 catgagaaaattaatctgctccagtcagaaggaagaagtgctgcttgtggccagaagagg 2472

                                      
Query: 372  tctgttcaagatggagttaaagtaaa 397
            || | |  |||||||||| |||||||
Sbjct: 2473 tcagatgcagatggagttcaagtaaa 2498



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>ref|XM_545588.2| PREDICTED: Canis familiaris similar to aldehyde oxidase structural
            homolog 2 (LOC488467), mRNA
          Length = 5094

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 191  acaaaagacctctcttcttga 211
            |||||||||||||||||||||
Sbjct: 1661 acaaaagacctctcttcttga 1641



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>emb|CR376789.4| Zebrafish DNA sequence from clone DKEYP-87A2 in linkage group 6,
            complete sequence
          Length = 190610

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 263  gaattcttcacaaccttctgt 283
            |||||||||||||||||||||
Sbjct: 5299 gaattcttcacaaccttctgt 5279



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>emb|AL136999.26| Human DNA sequence from clone RP11-187E23 on chromosome 13q21.31-21.33
             Contains STSs, GSSs and a CpG island, complete sequence
          Length = 171359

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 315   gagaaaattaatttgctcaag 335
             |||||||||||||||||||||
Sbjct: 98004 gagaaaattaatttgctcaag 97984



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>emb|BX324205.5| Zebrafish DNA sequence from clone CH211-10K1 in linkage group 14,
             complete sequence
          Length = 168546

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 223   aagaaaatgttgattcatgta 243
             |||||||||||||||||||||
Sbjct: 43757 aagaaaatgttgattcatgta 43737



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>emb|BX324116.7| Zebrafish DNA sequence from clone CH211-114G7 in linkage group 14,
              complete sequence
          Length = 167388

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 223    aagaaaatgttgattcatgta 243
              |||||||||||||||||||||
Sbjct: 107823 aagaaaatgttgattcatgta 107803



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>emb|AL844532.18| Mouse DNA sequence from clone RP23-221O14 on chromosome 2, complete
             sequence
          Length = 207432

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 71    caaaaaagacgagtctgcagtgcca 95
             ||||||||||||||||||| |||||
Sbjct: 28233 caaaaaagacgagtctgcattgcca 28257



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>emb|CR392368.7| Zebrafish DNA sequence from clone DKEY-86E18 in linkage group 20,
             complete sequence
          Length = 87973

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 182   acaaaatgaacaaaagacctc 202
             |||||||||||||||||||||
Sbjct: 25049 acaaaatgaacaaaagacctc 25029



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>gb|DQ150104.1| Canis familiaris aldehyde oxidase 2 mRNA, complete cds
          Length = 4228

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 191 acaaaagacctctcttcttga 211
           |||||||||||||||||||||
Sbjct: 595 acaaaagacctctcttcttga 575



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>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007B15 map S10318, complete sequence
          Length = 125243

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   attcatgtacagcagaaaac 254
             ||||||||||||||||||||
Sbjct: 67166 attcatgtacagcagaaaac 67147



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>gb|AC141429.4| Mus musculus BAC clone RP23-56L6 from chromosome 18, complete sequence
          Length = 192527

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    aagcagaattcttcacaacc 277
              ||||||||||||||||||||
Sbjct: 188690 aagcagaattcttcacaacc 188709



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>gb|AC066608.6| Homo sapiens chromosome 3 clone RP11-785A7 map 3p, complete sequence
          Length = 172811

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    aaatgaacaaaagacctctc 204
              ||||||||||||||||||||
Sbjct: 154192 aaatgaacaaaagacctctc 154173



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>gb|AC123951.3| Mus musculus BAC clone RP23-166M23 from 18, complete sequence
          Length = 220088

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   aagcagaattcttcacaacc 277
             ||||||||||||||||||||
Sbjct: 39587 aagcagaattcttcacaacc 39606



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>emb|AL591543.22| Human DNA sequence from clone RP13-198D9 on chromosome 9 Contains a
             novel  gene (KIAA2015), a novel gene, a tyrosine
             3-monooxygenase/tryptophan 5-monooxygenase activation
             protein, beta polypeptide (YWHAB) pseudogene and two CpG
             islands, complete sequence
          Length = 179501

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   agaaaattaatttgctcaag 335
             ||||||||||||||||||||
Sbjct: 24212 agaaaattaatttgctcaag 24193



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>emb|AL590705.9| Human DNA sequence from clone RP11-498P14 on chromosome 9 Contains four
             novel genes, a novel gene similar to FLJ23393. the 5' end
             of a novel gene (KIAA1529) and two CpG islands, complete
             sequence
          Length = 130244

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   agaaaattaatttgctcaag 335
             ||||||||||||||||||||
Sbjct: 25388 agaaaattaatttgctcaag 25369



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>emb|AL450386.17| Human DNA sequence from clone RP11-466B20 on chromosome 10 Contains a
             novel gene and a CpG island, complete sequence
          Length = 91331

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   aacaaaatgaacaaaagacc 200
             ||||||||||||||||||||
Sbjct: 61695 aacaaaatgaacaaaagacc 61714



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>ref|XM_794138.1| PREDICTED: Strongylocentrotus purpuratus similar to deleted in
           malignant brain tumors 1 isoform b precursor
           (LOC594704), partial mRNA
          Length = 1233

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 334 agtcagacataagcagtgct 353
           ||||||||||||||||||||
Sbjct: 206 agtcagacataagcagtgct 225



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>emb|AL596382.12| Mouse DNA sequence from clone RP23-337J7 on chromosome 11, complete
              sequence
          Length = 225083

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    aacaaaatgaacaaaagacc 200
              ||||||||||||||||||||
Sbjct: 165271 aacaaaatgaacaaaagacc 165252



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>emb|BX511209.11| Zebrafish DNA sequence from clone CH211-129A6 in linkage group 5,
             complete sequence
          Length = 159017

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 392   agtaaatgatagtttgtcatctaa 415
             ||||||||||||| ||||||||||
Sbjct: 99329 agtaaatgatagtgtgtcatctaa 99306



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>gb|AC093267.2| Homo sapiens chromosome 5 clone RP11-280F11, complete sequence
          Length = 170999

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 315   gagaaaattaatttgctcaagtca 338
             ||||||||||||||||| ||||||
Sbjct: 85285 gagaaaattaatttgcttaagtca 85308



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>gb|AC118470.2| Homo sapiens chromosome 1 clone RP11-634B7, complete sequence
          Length = 59105

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   caacaaaatgaacaaaagac 199
             ||||||||||||||||||||
Sbjct: 36798 caacaaaatgaacaaaagac 36817



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 235     attcatgtacagcagaaaac 254
               ||||||||||||||||||||
Sbjct: 3473211 attcatgtacagcagaaaac 3473192



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>gb|AC084456.1|AC084456 Caenorhabditis briggsae cosmid CB029P18, complete sequence
          Length = 87408

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   gaaatgcactcaactgaaaggaac 155
             |||||||||||| |||||||||||
Sbjct: 58591 gaaatgcactcacctgaaaggaac 58614



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>gb|AC083950.4| Homo sapiens BAC clone RP11-240P14 from 2, complete sequence
          Length = 115507

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 359   tgaccagaagaggtctgttc 378
             ||||||||||||||||||||
Sbjct: 74796 tgaccagaagaggtctgttc 74815



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>gb|AC091951.3| Homo sapiens chromosome 5 clone RP11-404K5, complete sequence
          Length = 160174

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   caaaagacctctcttcttga 211
             ||||||||||||||||||||
Sbjct: 60879 caaaagacctctcttcttga 60860



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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 374    tgttcaagatggagttaaag 393
              ||||||||||||||||||||
Sbjct: 764396 tgttcaagatggagttaaag 764377



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>emb|BX000997.10| Zebrafish DNA sequence from clone CH211-151C7 in linkage group 3,
            complete sequence
          Length = 160921

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 180  caacaaaatgaacaaaagac 199
            ||||||||||||||||||||
Sbjct: 5490 caacaaaatgaacaaaagac 5471



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>dbj|AK107313.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-D10, full
            insert sequence
          Length = 1638

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  attcatgtacagcagaaaac 254
            ||||||||||||||||||||
Sbjct: 1289 attcatgtacagcagaaaac 1308



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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 379     aagatggagttaaagtaaat 398
               ||||||||||||||||||||
Sbjct: 2157523 aagatggagttaaagtaaat 2157504



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 235     attcatgtacagcagaaaac 254
               ||||||||||||||||||||
Sbjct: 3481915 attcatgtacagcagaaaac 3481896



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>emb|AL954700.6| Mouse DNA sequence from clone RP24-322F9 on chromosome 2, complete
            sequence
          Length = 21328

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 180  caacaaaatgaacaaaagac 199
            ||||||||||||||||||||
Sbjct: 3901 caacaaaatgaacaaaagac 3882



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>gb|AC018842.6| Homo sapiens chromosome 3 clone RP11-82O3 map 3p, complete sequence
          Length = 175916

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    aaatgaacaaaagacctctc 204
              ||||||||||||||||||||
Sbjct: 143195 aaatgaacaaaagacctctc 143214


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,291,365
Number of Sequences: 3902068
Number of extensions: 6291365
Number of successful extensions: 118072
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117840
Number of HSP's gapped (non-prelim): 232
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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