Clone Name | bastl39a09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 312 catgagaaaattaatttgctcaagtcagacataagcagtgctgcttgtgaccagaagagg 371 ||||||||||||||| ||||| ||||||| ||| ||||||||||||| |||||||||| Sbjct: 18229780 catgagaaaattaatctgctccagtcagaaggaagaagtgctgcttgtggccagaagagg 18229839 Query: 372 tctgttcaagatggagttaaagtaaa 397 || | | |||||||||| ||||||| Sbjct: 18229840 tcagatgcagatggagttcaagtaaa 18229865
>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556A05 Length = 158189 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 312 catgagaaaattaatttgctcaagtcagacataagcagtgctgcttgtgaccagaagagg 371 ||||||||||||||| ||||| ||||||| ||| ||||||||||||| |||||||||| Sbjct: 78504 catgagaaaattaatctgctccagtcagaaggaagaagtgctgcttgtggccagaagagg 78563 Query: 372 tctgttcaagatggagttaaagtaaa 397 || | | |||||||||| ||||||| Sbjct: 78564 tcagatgcagatggagttcaagtaaa 78589
>dbj|AK121644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057B05, full insert sequence Length = 4292 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 312 catgagaaaattaatttgctcaagtcagacataagcagtgctgcttgtgaccagaagagg 371 ||||||||||||||| ||||| ||||||| ||| ||||||||||||| |||||||||| Sbjct: 2413 catgagaaaattaatctgctccagtcagaaggaagaagtgctgcttgtggccagaagagg 2472 Query: 372 tctgttcaagatggagttaaagtaaa 397 || | | |||||||||| ||||||| Sbjct: 2473 tcagatgcagatggagttcaagtaaa 2498
>ref|XM_545588.2| PREDICTED: Canis familiaris similar to aldehyde oxidase structural homolog 2 (LOC488467), mRNA Length = 5094 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 acaaaagacctctcttcttga 211 ||||||||||||||||||||| Sbjct: 1661 acaaaagacctctcttcttga 1641
>emb|CR376789.4| Zebrafish DNA sequence from clone DKEYP-87A2 in linkage group 6, complete sequence Length = 190610 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 gaattcttcacaaccttctgt 283 ||||||||||||||||||||| Sbjct: 5299 gaattcttcacaaccttctgt 5279
>emb|AL136999.26| Human DNA sequence from clone RP11-187E23 on chromosome 13q21.31-21.33 Contains STSs, GSSs and a CpG island, complete sequence Length = 171359 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 315 gagaaaattaatttgctcaag 335 ||||||||||||||||||||| Sbjct: 98004 gagaaaattaatttgctcaag 97984
>emb|BX324205.5| Zebrafish DNA sequence from clone CH211-10K1 in linkage group 14, complete sequence Length = 168546 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 aagaaaatgttgattcatgta 243 ||||||||||||||||||||| Sbjct: 43757 aagaaaatgttgattcatgta 43737
>emb|BX324116.7| Zebrafish DNA sequence from clone CH211-114G7 in linkage group 14, complete sequence Length = 167388 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 aagaaaatgttgattcatgta 243 ||||||||||||||||||||| Sbjct: 107823 aagaaaatgttgattcatgta 107803
>emb|AL844532.18| Mouse DNA sequence from clone RP23-221O14 on chromosome 2, complete sequence Length = 207432 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 caaaaaagacgagtctgcagtgcca 95 ||||||||||||||||||| ||||| Sbjct: 28233 caaaaaagacgagtctgcattgcca 28257
>emb|CR392368.7| Zebrafish DNA sequence from clone DKEY-86E18 in linkage group 20, complete sequence Length = 87973 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 acaaaatgaacaaaagacctc 202 ||||||||||||||||||||| Sbjct: 25049 acaaaatgaacaaaagacctc 25029
>gb|DQ150104.1| Canis familiaris aldehyde oxidase 2 mRNA, complete cds Length = 4228 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 acaaaagacctctcttcttga 211 ||||||||||||||||||||| Sbjct: 595 acaaaagacctctcttcttga 575
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007B15 map S10318, complete sequence Length = 125243 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 attcatgtacagcagaaaac 254 |||||||||||||||||||| Sbjct: 67166 attcatgtacagcagaaaac 67147
>gb|AC141429.4| Mus musculus BAC clone RP23-56L6 from chromosome 18, complete sequence Length = 192527 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 aagcagaattcttcacaacc 277 |||||||||||||||||||| Sbjct: 188690 aagcagaattcttcacaacc 188709
>gb|AC066608.6| Homo sapiens chromosome 3 clone RP11-785A7 map 3p, complete sequence Length = 172811 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 aaatgaacaaaagacctctc 204 |||||||||||||||||||| Sbjct: 154192 aaatgaacaaaagacctctc 154173
>gb|AC123951.3| Mus musculus BAC clone RP23-166M23 from 18, complete sequence Length = 220088 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 aagcagaattcttcacaacc 277 |||||||||||||||||||| Sbjct: 39587 aagcagaattcttcacaacc 39606
>emb|AL591543.22| Human DNA sequence from clone RP13-198D9 on chromosome 9 Contains a novel gene (KIAA2015), a novel gene, a tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide (YWHAB) pseudogene and two CpG islands, complete sequence Length = 179501 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 agaaaattaatttgctcaag 335 |||||||||||||||||||| Sbjct: 24212 agaaaattaatttgctcaag 24193
>emb|AL590705.9| Human DNA sequence from clone RP11-498P14 on chromosome 9 Contains four novel genes, a novel gene similar to FLJ23393. the 5' end of a novel gene (KIAA1529) and two CpG islands, complete sequence Length = 130244 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 agaaaattaatttgctcaag 335 |||||||||||||||||||| Sbjct: 25388 agaaaattaatttgctcaag 25369
>emb|AL450386.17| Human DNA sequence from clone RP11-466B20 on chromosome 10 Contains a novel gene and a CpG island, complete sequence Length = 91331 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 aacaaaatgaacaaaagacc 200 |||||||||||||||||||| Sbjct: 61695 aacaaaatgaacaaaagacc 61714
>ref|XM_794138.1| PREDICTED: Strongylocentrotus purpuratus similar to deleted in malignant brain tumors 1 isoform b precursor (LOC594704), partial mRNA Length = 1233 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 agtcagacataagcagtgct 353 |||||||||||||||||||| Sbjct: 206 agtcagacataagcagtgct 225
>emb|AL596382.12| Mouse DNA sequence from clone RP23-337J7 on chromosome 11, complete sequence Length = 225083 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 aacaaaatgaacaaaagacc 200 |||||||||||||||||||| Sbjct: 165271 aacaaaatgaacaaaagacc 165252
>emb|BX511209.11| Zebrafish DNA sequence from clone CH211-129A6 in linkage group 5, complete sequence Length = 159017 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 392 agtaaatgatagtttgtcatctaa 415 ||||||||||||| |||||||||| Sbjct: 99329 agtaaatgatagtgtgtcatctaa 99306
>gb|AC093267.2| Homo sapiens chromosome 5 clone RP11-280F11, complete sequence Length = 170999 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 gagaaaattaatttgctcaagtca 338 ||||||||||||||||| |||||| Sbjct: 85285 gagaaaattaatttgcttaagtca 85308
>gb|AC118470.2| Homo sapiens chromosome 1 clone RP11-634B7, complete sequence Length = 59105 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 caacaaaatgaacaaaagac 199 |||||||||||||||||||| Sbjct: 36798 caacaaaatgaacaaaagac 36817
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 attcatgtacagcagaaaac 254 |||||||||||||||||||| Sbjct: 3473211 attcatgtacagcagaaaac 3473192
>gb|AC084456.1|AC084456 Caenorhabditis briggsae cosmid CB029P18, complete sequence Length = 87408 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 gaaatgcactcaactgaaaggaac 155 |||||||||||| ||||||||||| Sbjct: 58591 gaaatgcactcacctgaaaggaac 58614
>gb|AC083950.4| Homo sapiens BAC clone RP11-240P14 from 2, complete sequence Length = 115507 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 tgaccagaagaggtctgttc 378 |||||||||||||||||||| Sbjct: 74796 tgaccagaagaggtctgttc 74815
>gb|AC091951.3| Homo sapiens chromosome 5 clone RP11-404K5, complete sequence Length = 160174 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 caaaagacctctcttcttga 211 |||||||||||||||||||| Sbjct: 60879 caaaagacctctcttcttga 60860
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 tgttcaagatggagttaaag 393 |||||||||||||||||||| Sbjct: 764396 tgttcaagatggagttaaag 764377
>emb|BX000997.10| Zebrafish DNA sequence from clone CH211-151C7 in linkage group 3, complete sequence Length = 160921 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 caacaaaatgaacaaaagac 199 |||||||||||||||||||| Sbjct: 5490 caacaaaatgaacaaaagac 5471
>dbj|AK107313.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-D10, full insert sequence Length = 1638 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 attcatgtacagcagaaaac 254 |||||||||||||||||||| Sbjct: 1289 attcatgtacagcagaaaac 1308
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 aagatggagttaaagtaaat 398 |||||||||||||||||||| Sbjct: 2157523 aagatggagttaaagtaaat 2157504
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 attcatgtacagcagaaaac 254 |||||||||||||||||||| Sbjct: 3481915 attcatgtacagcagaaaac 3481896
>emb|AL954700.6| Mouse DNA sequence from clone RP24-322F9 on chromosome 2, complete sequence Length = 21328 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 caacaaaatgaacaaaagac 199 |||||||||||||||||||| Sbjct: 3901 caacaaaatgaacaaaagac 3882
>gb|AC018842.6| Homo sapiens chromosome 3 clone RP11-82O3 map 3p, complete sequence Length = 175916 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 aaatgaacaaaagacctctc 204 |||||||||||||||||||| Sbjct: 143195 aaatgaacaaaagacctctc 143214 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,291,365 Number of Sequences: 3902068 Number of extensions: 6291365 Number of successful extensions: 118072 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117840 Number of HSP's gapped (non-prelim): 232 length of query: 447 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 425 effective length of database: 17,147,199,772 effective search space: 7287559903100 effective search space used: 7287559903100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)