ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl39a08 |
|---|---|
| Clone Library Name | barley_pub |
>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2| Length = 964 Score = 33.9 bits (76), Expect = 0.19 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = -3 Query: 436 PGARSSPKSMAPPASRFPAPACLAPRPLVGFPRRLLRARAIPNPNPG 296 P A+ K P P P AP+P G P + + A P P PG Sbjct: 140 PAAKPESKPTPKPGQNVPKPHAPAPKPKPGAPSKSPKPGARPGPRPG 186
>RL22_DROME (P50887) 60S ribosomal protein L22| Length = 299 Score = 32.7 bits (73), Expect = 0.42 Identities = 18/48 (37%), Positives = 26/48 (54%) Frame = -3 Query: 445 ASEPGARSSPKSMAPPASRFPAPACLAPRPLVGFPRRLLRARAIPNPN 302 A+ P +++P A PA+ PAPA A P V P +A+A P P+ Sbjct: 126 AAPPAKKAAPAKAAAPAAAAPAPAAAA--PAVAKPAPKPKAKAAPAPS 171
>KCNQ1_RAT (Q9Z0N7) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit KvLQT1) (KQT-like 1) Length = 669 Score = 32.0 bits (71), Expect = 0.71 Identities = 16/34 (47%), Positives = 18/34 (52%) Frame = -3 Query: 433 GARSSPKSMAPPASRFPAPACLAPRPLVGFPRRL 332 GA M+PP S PAPA L PRP V R+ Sbjct: 58 GAPGLAPPMSPPVSPVPAPADLGPRPRVSLDPRV 91
>ACHA4_HUMAN (P43681) Neuronal acetylcholine receptor protein, alpha-4 subunit| precursor Length = 627 Score = 32.0 bits (71), Expect = 0.71 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 9/57 (15%) Frame = -3 Query: 439 EPGARSSPKSMAPPASRF---------PAPACLAPRPLVGFPRRLLRARAIPNPNPG 296 EP A S +S+ PP+ F P P+C +P + + L +A P+P+PG Sbjct: 391 EPPATSGTQSLHPPSPSFCVPLDVPAEPGPSCKSPSDQLPPQQPLEAEKASPHPSPG 447
>HPLN4_MOUSE (Q80WM4) Hyaluronan and proteoglycan link protein 4 precursor| (Brain link protein 2) (Link protein 4) Length = 400 Score = 30.8 bits (68), Expect = 1.6 Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 11/45 (24%) Frame = -3 Query: 385 PAPACLAPRPLV---GFP---RRLL-----RARAIPNPNPGDWWW 284 P C PRP V GFP RRL RA P+P PG W W Sbjct: 333 PRTRCGGPRPGVRSLGFPDASRRLFGVYCYRAPGAPDPAPGGWGW 377
>Y2850_MYCTU (O05809) Hypothetical protein Rv2850c/MT2916| Length = 629 Score = 30.4 bits (67), Expect = 2.1 Identities = 17/41 (41%), Positives = 20/41 (48%) Frame = -3 Query: 442 SEPGARSSPKSMAPPASRFPAPACLAPRPLVGFPRRLLRAR 320 + P RSSP+ APP+ F A P G P R RAR Sbjct: 353 ASPRLRSSPRPSAPPSKIFRTRALRVPGVGTGAPGRRSRAR 393
>TBX2_MOUSE (Q60707) T-box transcription factor TBX2 (T-box protein 2)| Length = 701 Score = 30.4 bits (67), Expect = 2.1 Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = -3 Query: 433 GARSSPKSMAPPASRFPAPA-CLAPRPLVGFPRRLLRARAIPNPNPGD 293 GA S S PP +R P P+ AP PL RL RARA P D Sbjct: 307 GAESDASSCDPPPAREPPPSPSAAPSPL-----RLHRARAEEKPGAAD 349
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = -3 Query: 442 SEPGARSSPKSMAPPASRFPAP-ACLAPRPLVGFPRRLLRARAIPNPNPG 296 ++PGA S ++ P A R PAP A RP R A A P P PG Sbjct: 66 AKPGAPSPAQAARPAAPRPPAPKPAAAERPAAA--ERPAAAPAAPGPRPG 113
>ACHA4_PANTR (Q5IS77) Neuronal acetylcholine receptor protein, alpha-4 subunit| precursor Length = 627 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 9/57 (15%) Frame = -3 Query: 439 EPGARSSPKSMAPPASRF---------PAPACLAPRPLVGFPRRLLRARAIPNPNPG 296 EP A S +S+ PP+ F P P+C +P + + L +A P+ +PG Sbjct: 391 EPPATSGTQSLHPPSPSFCIPLDVPAEPGPSCKSPSDQLPAQQPLEAEKASPHASPG 447
>TY3H_HUMAN (P07101) Tyrosine 3-monooxygenase (EC 1.14.16.2) (Tyrosine| 3-hydroxylase) (TH) Length = 528 Score = 29.6 bits (65), Expect = 3.5 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = +1 Query: 319 RALEANDVGSRQEAEERGRQAPGSGKPGGPW--TSATTSRRAPTP 447 RA+ D + RG+ APG G PW T+A + PTP Sbjct: 16 RAVSELDAKQAEAIMVRGQGAPGPSLTGSPWPGTAAPAASYTPTP 60
>PDZK4_HUMAN (Q76G19) PDZ domain-containing protein 4 (PDZ domain-containing| RING finger protein 4-like protein) Length = 769 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Frame = +1 Query: 337 DVGSRQEAEERGRQAPGSG---KPGGPWTSATTSRR 435 + G RQ AEERGR+ P +G + GP +S SRR Sbjct: 535 EAGRRQHAEERGRRNPKTGLTLERVGPESSPYLSRR 570
>KITH_BHV16 (P24096) Thymidine kinase (EC 2.7.1.21)| Length = 357 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Frame = -3 Query: 445 ASEPGARSSPKSMAPPASRFPAPACLAPR----PLVGFPRRLLRARAIPNPNPG 296 A+ G+ + ++ AP P C+ P P++ F R +RA A P P PG Sbjct: 71 AASHGSARARRAGAPRRRGRGGPGCVLPGQVRGPVLNFARARVRAAAPPGPAPG 124
>C3G_DROME (O77086) Guanine nucleotide-releasing factor 2 (CRK SH3-binding| GNRP) Length = 1571 Score = 29.3 bits (64), Expect = 4.6 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Frame = -2 Query: 446 GVGARREVVAEVHGPPGFPLPGACLPRSSA--SCRLPTSFASSARNPKSQ 303 G+GA E++ V PG +PG + R SA S TS A PK + Sbjct: 458 GIGAAAEIMGAVTASPGASVPGTGVMRVSAAESAAQRTSLPDIALTPKER 507
>V70K_TYMVC (P28478) 69 kDa protein| Length = 628 Score = 28.9 bits (63), Expect = 6.0 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%) Frame = -3 Query: 445 ASEPGARSSPKSMAPPASRFPAPACLAP--------RPLVGFPRRLLRARAIPNP 305 + +PG P+ +AP ++R P P + P RPL PR R +PNP Sbjct: 235 SDDPGILG-PRPLAPNSTRDPPPRPITPGPSNTHGLRPLSVLPRASPRRGLLPNP 288
>V70K_TYMV (P10357) 69 kDa protein| Length = 628 Score = 28.9 bits (63), Expect = 6.0 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%) Frame = -3 Query: 445 ASEPGARSSPKSMAPPASRFPAPACLAP--------RPLVGFPRRLLRARAIPNP 305 + +PG P+ +AP ++R P P + P RPL PR R +PNP Sbjct: 235 SDDPGILG-PRPLAPHSTRDPPPRPITPGPSNTHDLRPLSVLPRTSPRRGLLPNP 288
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4| (Trithorax homolog 2) Length = 2715 Score = 28.9 bits (63), Expect = 6.0 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = -3 Query: 436 PGARSSPKSMAPPASRFPAPACLAPRPLVGFPRRLLRARAIPNPNP 299 P A S P + PP++ P P C P P V P +P+P P Sbjct: 408 PPAPSPPPPLPPPSTSPPPPLCPPPPPPVSPP-------PLPSPPP 446
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 28.9 bits (63), Expect = 6.0 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = -3 Query: 418 PKSMAPPASRFPAPACLAPRPLVGFP---RRLLRARAIPNPNPGD 293 P + P +RFP P P PL+G P +LR P P D Sbjct: 1451 PLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPRD 1495
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 28.9 bits (63), Expect = 6.0 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = -3 Query: 418 PKSMAPPASRFPAPACLAPRPLVGFP---RRLLRARAIPNPNPGD 293 P + P +RFP P P PL+G P +LR P P D Sbjct: 1450 PLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPRD 1494
>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-like protein) (Atrophin-1-related protein) Length = 1566 Score = 28.9 bits (63), Expect = 6.0 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = -3 Query: 418 PKSMAPPASRFPAPACLAPRPLVGFP---RRLLRARAIPNPNPGD 293 P + P +RFP P P PL+G P +LR P P D Sbjct: 1458 PLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPRD 1502
>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)| Length = 701 Score = 28.9 bits (63), Expect = 6.0 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = -3 Query: 433 GARSSPKSM-APPASRFPAPACLAPRPLVGFPRRLLRARAIPNPNP 299 G+RSSP + PP S P PR LVG LRA +P P P Sbjct: 582 GSRSSPPAPPLPPGSGSPGTPQALPRRLVG---SSLRAPTVPPPLP 624
>CCD95_HUMAN (Q8NBZ0) Coiled-coil domain-containing protein 95| Length = 244 Score = 28.5 bits (62), Expect = 7.9 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -3 Query: 415 KSMAPPASRFPAPACLAPRPLVGFPRRLLRARAIPNP 305 + +PP P+P+ L+ P GFP L+A +P+P Sbjct: 95 RKRSPPLGGAPSPSSLSLPPSTGFP---LQASGVPSP 128
>SCNAA_HUMAN (P37088) Amiloride-sensitive sodium channel alpha-subunit| (Epithelial Na+ channel alpha subunit) (Alpha ENaC) (Nonvoltage-gated sodium channel 1 alpha subunit) (SCNEA) (Alpha NaCH) Length = 669 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/32 (50%), Positives = 17/32 (53%) Frame = -3 Query: 442 SEPGARSSPKSMAPPASRFPAPACLAPRPLVG 347 S+PG SP APP PA A L PRP G Sbjct: 627 SQPGPAPSPALTAPP----PAYATLGPRPSPG 654
>POPD2_MOUSE (Q9ES82) Popeye domain-containing protein 2 (Popeye protein 2)| Length = 367 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = -3 Query: 412 SMAPPASRFPAPACLAPRPLVGFPRRLLRAR--AIPNPNPGD 293 + A P P P C AP FP L RAR +P P+ G+ Sbjct: 297 AQARPICIVPTPPCSAPPATTNFPVPLPRARMPRMPRPDSGN 338
>KCNQ1_MOUSE (P97414) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit KvLQT1) (KQT-like 1) Length = 668 Score = 28.5 bits (62), Expect = 7.9 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -3 Query: 433 GARSSPKSMAPPASRFPAPACLAPRPLVGFPRRL 332 GA M+ P S PAPA L PRP V R+ Sbjct: 57 GAPGLAPPMSTPVSPAPAPADLGPRPRVSLDPRV 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,403,312 Number of Sequences: 219361 Number of extensions: 762165 Number of successful extensions: 4032 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3483 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3994 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
