ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl39a07 |
|---|---|
| Clone Library Name | barley_pub |
>REL_HUMAN (Q04864) C-Rel proto-oncogene protein (C-Rel protein)| Length = 619 Score = 34.3 bits (77), Expect = 0.075 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%) Frame = +3 Query: 9 LPSSSWTSLAD*SPNSPQIPPLS----REIPNLAHGRRPWCRAP 128 LPSSSW+S+A +P S PLS R +P+ + G P+ R P Sbjct: 407 LPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNSQGIPPFLRIP 450
>RS14_RAT (P13471) 40S ribosomal protein S14| Length = 150 Score = 32.0 bits (71), Expect = 0.37 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>RS14_MOUSE (P62264) 40S ribosomal protein S14| Length = 150 Score = 32.0 bits (71), Expect = 0.37 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>RS14_HUMAN (P62263) 40S ribosomal protein S14| Length = 150 Score = 32.0 bits (71), Expect = 0.37 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>RS14_CRIGR (P62265) 40S ribosomal protein S14| Length = 150 Score = 32.0 bits (71), Expect = 0.37 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>RS14_KLULA (P27069) 40S ribosomal protein S14 (RP59)| Length = 137 Score = 31.2 bits (69), Expect = 0.63 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +RS TP P + +R AR G +GRI S S R GGRR Sbjct: 87 GGTRSKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 133
>RS14_CHLRE (P46295) 40S ribosomal protein S14| Length = 153 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +R+ TP P S +R AR G +GRI + S R GGRR Sbjct: 103 GGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDSTRRKGGRR 149
>RS14A_YEAST (P06367) 40S ribosomal protein S14-A (RP59A)| Length = 136 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +R+ TP P + +R AR G +GRI S S R GGRR Sbjct: 86 GGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 132
>RS14B_YEAST (P39516) 40S ribosomal protein S14-B (RP59B)| Length = 137 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +R+ TP P + +R AR G +GRI S S R GGRR Sbjct: 87 GGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 133
>RS14_PROCL (P48855) 40S ribosomal protein S14| Length = 151 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +++ TP P S +R AR G +GRI S S R GGRR Sbjct: 101 GGNKTKTPGPGGQSALRALARAGMKIGRIEDVTPVPSDSTRRKGGRR 147
>RS14_PODCA (Q08699) 40S ribosomal protein S14| Length = 151 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +R+ TP P S +R AR G +GRI S R GGRR Sbjct: 101 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCTRRKGGRR 147
>RS14_CANAL (Q96W53) 40S ribosomal protein S14| Length = 134 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +++ TP P S +R AR G +GRI S S R GGRR Sbjct: 84 GGTKTKTPGPGGQSALRALARSGLRIGRIEDVTPVPSDSTRRKGGRR 130
>RS141_MAIZE (P19950) 40S ribosomal protein S14 (Clone MCH1)| Length = 149 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 99 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRR 145
>RS14_CAEEL (P48150) 40S ribosomal protein S14| Length = 152 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +R+ TP P S +R AR G +GRI S R GGRR Sbjct: 102 GGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCTRRKGGRR 148
>RS143_ARATH (P42036) 40S ribosomal protein S14-3| Length = 150 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146
>RS142_MAIZE (P19951) 40S ribosomal protein S14 (Clone MCH2)| Length = 150 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRR 146
>RS142_ARATH (Q9CAX6) 40S ribosomal protein S14-2| Length = 150 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146
>RS141_ARATH (Q9SIH0) 40S ribosomal protein S14-1| Length = 150 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146
>RS14_NEUCR (P19115) 40S ribosomal protein S14 (CRP2)| Length = 150 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRI-----GASISERSPGGRR 12 G + + TP P S +R AR G +GRI S S R GGRR Sbjct: 100 GGNGTRTPGPGAQSALRALARSGMKIGRIEDVTPTPSDSTRRKGGRR 146
>TRAM4_ECOLI (Q00186) Protein traM| Length = 144 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -1 Query: 120 DTMASSREQDSGFREKGEGFGENWGFNQRAKSRRKKGGA 4 D+ A E + F+E+ EG WG + +AK+ R A Sbjct: 38 DSAAKQEEILAAFKEELEGIAHRWGEDAKAKAERMLNAA 76
>RS14_DROME (P14130) 40S ribosomal protein S14| Length = 151 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G +++ TP P S +R AR +GRI S S R GGRR Sbjct: 101 GGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRRKGGRR 147
>SGS4_DROME (Q00725) Salivary glue protein Sgs-4 precursor| Length = 297 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/36 (36%), Positives = 14/36 (38%) Frame = +3 Query: 45 SPNSPQIPPLSREIPNLAHGRRPWCRAPTPTCLTWP 152 +P PP R P P CR PTC T P Sbjct: 63 TPKCETTPPTCRTEPPTCKTEPPTCRTEPPTCKTKP 98 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/35 (37%), Positives = 14/35 (40%) Frame = +3 Query: 48 PNSPQIPPLSREIPNLAHGRRPWCRAPTPTCLTWP 152 P PP R P + P CR PTC T P Sbjct: 78 PTCKTEPPTCRTEPPTCKTKPPTCRTEPPTCRTEP 112
>RS11_PYRHO (P62011) 30S ribosomal protein S11P| Length = 137 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G S+S TP P + IR AR G +GR+ R GGRR Sbjct: 87 GGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRR 133
>RS11_PYRFU (Q8U0E3) 30S ribosomal protein S11P| Length = 137 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G S+S TP P + IR AR G +GR+ R GGRR Sbjct: 87 GGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRR 133
>RS11_PYRAB (P62010) 30S ribosomal protein S11P| Length = 137 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G S+S TP P + IR AR G +GR+ R GGRR Sbjct: 87 GGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRR 133
>UBP2_YEAST (Q01476) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)| (Ubiquitin thioesterase 2) (Ubiquitin-specific-processing protease 2) (Deubiquitinating enzyme 2) Length = 1272 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -3 Query: 79 RERGGIWGELGLQSASEVQEEE 14 R R GIW + ++ SEVQEEE Sbjct: 1217 RNRNGIWRKYNDETISEVQEEE 1238
>DHRS3_HUMAN (O75911) Short-chain dehydrogenase/reductase 3 (EC 1.1.-.-)| (Retinal short-chain dehydrogenase/reductase 1) (retSDR1) (DD83.1) Length = 302 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +1 Query: 52 ILPKSLPFLAKSRILLTGGGHGV 120 +LP L L++ +L+TGGG G+ Sbjct: 28 VLPAKLRDLSRENVLITGGGRGI 50
>DHRS3_BOVIN (O77769) Short-chain dehydrogenase/reductase 3 (EC 1.1.-.-)| (Retinal short-chain dehydrogenase/reductase 1) (retSDR1) Length = 302 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +1 Query: 52 ILPKSLPFLAKSRILLTGGGHGV 120 +LP L L++ +L+TGGG G+ Sbjct: 28 VLPAKLRDLSRENVLITGGGRGI 50
>SYE2_HELPY (O25360) GlutamylGlutaminyl-tRNA synthetase (EC 6.1.1.-) (GluGlnRS)| (Glutamyl-tRNA synthetase 2) (Glutamate--tRNA ligase 2) (GluRS 2) Length = 439 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/24 (58%), Positives = 14/24 (58%) Frame = +1 Query: 61 KSLPFLAKSRILLTGGGHGVELLL 132 K F RILLTG HGVEL L Sbjct: 399 KGKDFFKPLRILLTGNSHGVELPL 422
>SYE2_HELPJ (Q9ZLJ1) GlutamylGlutaminyl-tRNA synthetase (EC 6.1.1.-) (GluGlnRS)| (Glutamyl-tRNA synthetase 2) (Glutamate--tRNA ligase 2) (GluRS 2) Length = 439 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/24 (58%), Positives = 14/24 (58%) Frame = +1 Query: 61 KSLPFLAKSRILLTGGGHGVELLL 132 K F RILLTG HGVEL L Sbjct: 399 KGKDFFKPLRILLTGNSHGVELPL 422
>RS11_ARCFU (O28001) 30S ribosomal protein S11P| Length = 133 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = -2 Query: 137 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 12 G ++ +TP P + IR AR G +GRI R PGG+R Sbjct: 83 GGNKHTTPGPGAQAAIRALARAGLKIGRIEDVTPIPHDGTRPPGGKR 129
>GCC7_CAEEL (Q21770) Germ cell expressed protein R06C7.1| Length = 945 Score = 23.1 bits (48), Expect(2) = 8.3 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -2 Query: 122 STPWPPPVSKIRDFARKGRDL 60 ST P P+ ++A++GRDL Sbjct: 884 STSIPTPLYVANEYAKRGRDL 904 Score = 22.7 bits (47), Expect(2) = 8.3 Identities = 8/20 (40%), Positives = 12/20 (60%) Frame = -3 Query: 64 IWGELGLQSASEVQEEEGRR 5 +WGEL + E +E +G R Sbjct: 904 LWGELTTKGPIEAKESQGER 923
>DHRS3_MOUSE (O88876) Short-chain dehydrogenase/reductase 3 (EC 1.1.-.-)| (Retinal short-chain dehydrogenase/reductase 1) (retSDR1) Length = 302 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +1 Query: 52 ILPKSLPFLAKSRILLTGGGHGV 120 +LP L L++ +L+TGGG G+ Sbjct: 28 VLPPKLRDLSRESVLITGGGRGI 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,230,180 Number of Sequences: 219361 Number of extensions: 504145 Number of successful extensions: 2079 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 1999 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2078 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
