ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl39a05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 262 bits (132), Expect = 8e-67 Identities = 240/276 (86%) Strand = Plus / Plus Query: 152 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 211 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 19187329 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 19187388 Query: 212 gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 271 | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 19187389 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 19187448 Query: 272 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 331 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| ||||| Sbjct: 19187449 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 19187508 Query: 332 cttcctcgatgggaccagcagcgtgtacctcgaggagctgcagcgggcgtgggaggcgga 391 |||||| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||| || Sbjct: 19187509 cttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctga 19187568 Query: 392 cccgacctccgtcgacgagtcctgggacaacttctt 427 || ||||| |||||||||||||||||||| ||||| Sbjct: 19187569 tcccacctctgtcgacgagtcctgggacaatttctt 19187604 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 catctttctcctcttcccctc 42 ||||||||||||||||||||| Sbjct: 13847317 catctttctcctcttcccctc 13847297
>dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N21, full insert sequence Length = 3612 Score = 262 bits (132), Expect = 8e-67 Identities = 240/276 (86%) Strand = Plus / Plus Query: 152 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 211 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 271 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 330 Query: 212 gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 271 | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 331 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 390 Query: 272 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 331 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| ||||| Sbjct: 391 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 450 Query: 332 cttcctcgatgggaccagcagcgtgtacctcgaggagctgcagcgggcgtgggaggcgga 391 |||||| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||| || Sbjct: 451 cttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctga 510 Query: 392 cccgacctccgtcgacgagtcctgggacaacttctt 427 || ||||| |||||||||||||||||||| ||||| Sbjct: 511 tcccacctctgtcgacgagtcctgggacaatttctt 546
>dbj|AK068713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161L21, full insert sequence Length = 2576 Score = 262 bits (132), Expect = 8e-67 Identities = 240/276 (86%) Strand = Plus / Plus Query: 152 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 211 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 261 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 320 Query: 212 gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 271 | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 321 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 380 Query: 272 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 331 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| ||||| Sbjct: 381 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 440 Query: 332 cttcctcgatgggaccagcagcgtgtacctcgaggagctgcagcgggcgtgggaggcgga 391 |||||| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||| || Sbjct: 441 cttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctga 500 Query: 392 cccgacctccgtcgacgagtcctgggacaacttctt 427 || ||||| |||||||||||||||||||| ||||| Sbjct: 501 tcccacctctgtcgacgagtcctgggacaatttctt 536
>dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O03, full insert sequence Length = 3581 Score = 262 bits (132), Expect = 8e-67 Identities = 240/276 (86%) Strand = Plus / Plus Query: 152 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 211 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 317 gaaaatggggtggtttcgggctgcgtcaggattggctcgggtggcgctgaggaggaacct 376 Query: 212 gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 271 | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 377 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 436 Query: 272 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 331 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| ||||| Sbjct: 437 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 496 Query: 332 cttcctcgatgggaccagcagcgtgtacctcgaggagctgcagcgggcgtgggaggcgga 391 |||||| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||| || Sbjct: 497 cttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctga 556 Query: 392 cccgacctccgtcgacgagtcctgggacaacttctt 427 || ||||| |||||||||||||||||||| ||||| Sbjct: 557 tcccacctctgtcgacgagtcctgggacaatttctt 592
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 248 bits (125), Expect = 1e-62 Identities = 240/277 (86%), Gaps = 1/277 (0%) Strand = Plus / Plus Query: 152 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcg-gaggagcc 210 |||||||||| ||| ||||| ||||| || || || |||||||||||| | ||||| || Sbjct: 120850 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgagtgaggaacc 120909 Query: 211 tgtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgc 270 || |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 120910 tggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccaccc 120969 Query: 271 tcccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagaca 330 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| |||| Sbjct: 120970 gcccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgaca 121029 Query: 331 gcttcctcgatgggaccagcagcgtgtacctcgaggagctgcagcgggcgtgggaggcgg 390 ||||||| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||| | Sbjct: 121030 gcttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctg 121089 Query: 391 acccgacctccgtcgacgagtcctgggacaacttctt 427 | || ||||| |||||||||||||||||||| ||||| Sbjct: 121090 atcccacctctgtcgacgagtcctgggacaatttctt 121126
>ref|XM_479634.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3554 Score = 131 bits (66), Expect = 2e-27 Identities = 117/134 (87%) Strand = Plus / Plus Query: 296 gccccgcgccgtgccgctctcgcgcctcacagacagcttcctcgatgggaccagcagcgt 355 |||||||||||| ||||| || | || || |||||||||||||| || ||||||||||| Sbjct: 415 gccccgcgccgtcccgctgtccaggcttaccgacagcttcctcgacggcaccagcagcgt 474 Query: 356 gtacctcgaggagctgcagcgggcgtgggaggcggacccgacctccgtcgacgagtcctg 415 |||||||||||||| ||||| || |||||||| ||||| ||||||||||||| ||||| Sbjct: 475 ctacctcgaggagctccagcgcgcatgggaggccgacccctcctccgtcgacgaatcctg 534 Query: 416 ggacaacttcttcc 429 |||||||||||||| Sbjct: 535 ggacaacttcttcc 548
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 131 bits (66), Expect = 2e-27 Identities = 117/134 (87%) Strand = Plus / Plus Query: 296 gccccgcgccgtgccgctctcgcgcctcacagacagcttcctcgatgggaccagcagcgt 355 |||||||||||| ||||| || | || || |||||||||||||| || ||||||||||| Sbjct: 29603810 gccccgcgccgtcccgctgtccaggcttaccgacagcttcctcgacggcaccagcagcgt 29603869 Query: 356 gtacctcgaggagctgcagcgggcgtgggaggcggacccgacctccgtcgacgagtcctg 415 |||||||||||||| ||||| || |||||||| ||||| ||||||||||||| ||||| Sbjct: 29603870 ctacctcgaggagctccagcgcgcatgggaggccgacccctcctccgtcgacgaatcctg 29603929 Query: 416 ggacaacttcttcc 429 |||||||||||||| Sbjct: 29603930 ggacaacttcttcc 29603943
>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0627E10 Length = 163388 Score = 131 bits (66), Expect = 2e-27 Identities = 117/134 (87%) Strand = Plus / Plus Query: 296 gccccgcgccgtgccgctctcgcgcctcacagacagcttcctcgatgggaccagcagcgt 355 |||||||||||| ||||| || | || || |||||||||||||| || ||||||||||| Sbjct: 130482 gccccgcgccgtcccgctgtccaggcttaccgacagcttcctcgacggcaccagcagcgt 130541 Query: 356 gtacctcgaggagctgcagcgggcgtgggaggcggacccgacctccgtcgacgagtcctg 415 |||||||||||||| ||||| || |||||||| ||||| ||||||||||||| ||||| Sbjct: 130542 ctacctcgaggagctccagcgcgcatgggaggccgacccctcctccgtcgacgaatcctg 130601 Query: 416 ggacaacttcttcc 429 |||||||||||||| Sbjct: 130602 ggacaacttcttcc 130615
>dbj|AK100482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097A04, full insert sequence Length = 3554 Score = 131 bits (66), Expect = 2e-27 Identities = 117/134 (87%) Strand = Plus / Plus Query: 296 gccccgcgccgtgccgctctcgcgcctcacagacagcttcctcgatgggaccagcagcgt 355 |||||||||||| ||||| || | || || |||||||||||||| || ||||||||||| Sbjct: 415 gccccgcgccgtcccgctgtccaggcttaccgacagcttcctcgacggcaccagcagcgt 474 Query: 356 gtacctcgaggagctgcagcgggcgtgggaggcggacccgacctccgtcgacgagtcctg 415 |||||||||||||| ||||| || |||||||| ||||| ||||||||||||| ||||| Sbjct: 475 ctacctcgaggagctccagcgcgcatgggaggccgacccctcctccgtcgacgaatcctg 534 Query: 416 ggacaacttcttcc 429 |||||||||||||| Sbjct: 535 ggacaacttcttcc 548
>gb|BC103828.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13, mRNA (cDNA clone IMAGE:40001637), complete cds Length = 2230 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 1251 agacagcttcctcgatgggacc 1272
>gb|BC103829.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13, mRNA (cDNA clone IMAGE:40001639), complete cds Length = 2230 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 1251 agacagcttcctcgatgggacc 1272
>ref|NM_184141.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1870 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 32 ctcttcccctcgcggcggcgtc 53 |||||||||||||||||||||| Sbjct: 80 ctcttcccctcgcggcggcgtc 101
>ref|XM_528523.1| PREDICTED: Pan troglodytes similar to a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13 isoform 1 preproprotein; chromosome 9 open reading frame 8; von Willebrand factor-cleaving protease (LOC473153), mRNA Length = 4614 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 1137 agacagcttcctcgatgggacc 1158
>gb|AY055376.1| Homo sapiens von Willebrand factor-cleaving protease precursor (ADAMTS13) mRNA, complete cds Length = 4597 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 1605 agacagcttcctcgatgggacc 1626
>gb|AY358118.1| Homo sapiens clone DNA145839 ADAMTS13 (UNQ6102) mRNA, complete cds Length = 3709 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 709 agacagcttcctcgatgggacc 730
>emb|AJ011374.1|HSA011374 Homo sapiens mRNA for hypothetical protein (C9orf8 gene) Length = 2217 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 1131 agacagcttcctcgatgggacc 1152
>emb|AL158826.23| Human DNA sequence from clone RP11-244N20 on chromosome 9 Contains the 5' end of the ABO gene for ABO blood group (transferase A alpha 1-3-N-acetylgalactosaminyltransferase; transferase B alpha 1-3-galactosyltransferase) pseudogene ABO-*O02 allele, the gene for a novel protein similar to lipocalin 1 (protein migrating faster than albumin tear prealbumin) (LCN1), a ribosomal protein L21 (RPL21) pseudogene, the RPL7A gene for ribosomal protein L7a, a novel gene (MGC43306), the XPMC2H gene for Xenopus prevents mitotic catastrophe 2 homolog, the 5' end of the ADAMTS13 gene for a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif 13, the SURF1 gene for surfeit 1, the SURF2 gene for surfeit 2, the SURF4 gene for surfeit 4, the SURF5 gene for surfeit 5, the SURF6 gene for surfeit 6 and eight CpG islands, complete sequence Length = 184513 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 169586 agacagcttcctcgatgggacc 169607
>ref|NM_139027.2| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13 (ADAMTS13), transcript variant 2, mRNA Length = 4765 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 1941 agacagcttcctcgatgggacc 1962
>ref|NM_139026.2| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13 (ADAMTS13), transcript variant 3, mRNA Length = 4672 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 1848 agacagcttcctcgatgggacc 1869
>ref|NM_139025.2| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13 (ADAMTS13), transcript variant 1, mRNA Length = 4933 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 1941 agacagcttcctcgatgggacc 1962
>ref|NM_139028.2| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13 (ADAMTS13), transcript variant 4, mRNA Length = 3346 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 2260 agacagcttcctcgatgggacc 2281
>gb|DQ422807.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13 (ADAMTS13) gene, complete cds Length = 40955 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 17416 agacagcttcctcgatgggacc 17437
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 32 ctcttcccctcgcggcggcgtc 53 |||||||||||||||||||||| Sbjct: 1170048 ctcttcccctcgcggcggcgtc 1170027
>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A04 Length = 141079 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 32 ctcttcccctcgcggcggcgtc 53 |||||||||||||||||||||| Sbjct: 139362 ctcttcccctcgcggcggcgtc 139341
>dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684C01 Length = 78600 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 32 ctcttcccctcgcggcggcgtc 53 |||||||||||||||||||||| Sbjct: 24351 ctcttcccctcgcggcggcgtc 24330
>emb|AJ305314.1|HSA305314 Homo sapiens mRNA for ADAMTS-13 protein Length = 4185 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 1524 agacagcttcctcgatgggacc 1545
>dbj|AK067227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098B14, full insert sequence Length = 1873 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 32 ctcttcccctcgcggcggcgtc 53 |||||||||||||||||||||| Sbjct: 80 ctcttcccctcgcggcggcgtc 101
>gb|AC002325.1|AC002325 Homo sapiens chromosome 9q34, clone 23B4, complete sequence Length = 44762 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 40094 agacagcttcctcgatgggacc 40073
>gb|AF414401.1| Homo sapiens ADAMTS13 (ADAMTS13) mRNA, complete cds, alternatively spliced Length = 4550 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 1558 agacagcttcctcgatgggacc 1579
>dbj|AB069698.2| Homo sapiens vWF-CP(ADAMTS13) mRNA for von Willebrand factor-cleaving protease, complete cds Length = 4950 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 1941 agacagcttcctcgatgggacc 1962
>emb|AJ420810.1|HSA420810 Homo sapiens mRNA for ADAMTS-13 protein, variant 2 Length = 4278 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 agacagcttcctcgatgggacc 347 |||||||||||||||||||||| Sbjct: 1617 agacagcttcctcgatgggacc 1638
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 gccggccccgcgccgcggtac 257 ||||||||||||||||||||| Sbjct: 3378810 gccggccccgcgccgcggtac 3378830
>emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0023J03, complete sequence Length = 175555 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 catctttctcctcttcccctc 42 ||||||||||||||||||||| Sbjct: 60976 catctttctcctcttcccctc 60956
>gb|S69367.1| Pax-6/Pax-QNR=transcription factor {promoter} [Coturnix sp. SP-1993, Genomic, 1513 nt] Length = 1513 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 gccccgcgccgtgccgctctc 316 ||||||||||||||||||||| Sbjct: 673 gccccgcgccgtgccgctctc 653
>ref|XM_214261.3| PREDICTED: Rattus norvegicus oxoglutarate dehydrogenase-like (predicted) (Ogdhl_predicted), mRNA Length = 3291 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 409 agtcctgggacaacttcttcc 429 ||||||||||||||||||||| Sbjct: 461 agtcctgggacaacttcttcc 481
>gb|BC025080.1| Mus musculus apoptosis antagonizing transcription factor, mRNA (cDNA clone MGC:35916 IMAGE:2648117), complete cds Length = 1800 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 catctttctcctcttcccct 41 |||||||||||||||||||| Sbjct: 251 catctttctcctcttcccct 232
>ref|NM_019816.1| Mus musculus apoptosis antagonizing transcription factor (Aatf), mRNA Length = 1844 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 catctttctcctcttcccct 41 |||||||||||||||||||| Sbjct: 264 catctttctcctcttcccct 245
>ref|XM_988395.1| PREDICTED: Mus musculus apoptosis antagonizing transcription factor (Aatf), mRNA Length = 1883 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 catctttctcctcttcccct 41 |||||||||||||||||||| Sbjct: 325 catctttctcctcttcccct 306
>ref|XM_380273.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00097.1) partial mRNA Length = 1749 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 gaggagctgcagcgggcgtgggag 386 |||||||||||||||| ||||||| Sbjct: 52 gaggagctgcagcgggagtgggag 75
>emb|CR647832.2|CNS0EYU6 Tetraodon nigroviridis full-length cDNA Length = 1651 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ggtttagcccgggtggcgct 199 |||||||||||||||||||| Sbjct: 1111 ggtttagcccgggtggcgct 1130
>ref|XM_777733.1| PREDICTED: Strongylocentrotus purpuratus similar to centrosome-associated protein 350 (LOC577510), mRNA Length = 10727 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 atccgcgtccatctttctcctctt 36 |||||| ||||||||||||||||| Sbjct: 6834 atccgcctccatctttctcctctt 6811
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tcgccggccccgcgccgcgg 254 |||||||||||||||||||| Sbjct: 229143 tcgccggccccgcgccgcgg 229162
>emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on chromosome 11, complete sequence Length = 198743 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 catctttctcctcttcccct 41 |||||||||||||||||||| Sbjct: 52540 catctttctcctcttcccct 52559
>dbj|AK141334.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430031I20 product:apoptosis antagonizing transcription factor, full insert sequence Length = 1790 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 catctttctcctcttcccct 41 |||||||||||||||||||| Sbjct: 262 catctttctcctcttcccct 243
>dbj|AK077789.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830465M17 product:traube, full insert sequence Length = 1995 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 catctttctcctcttcccct 41 |||||||||||||||||||| Sbjct: 288 catctttctcctcttcccct 269
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 tcgccggccccgcgccgcgg 254 |||||||||||||||||||| Sbjct: 584216 tcgccggccccgcgccgcgg 584197
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 tcctcttcccctcgcggcggcgtc 53 |||||||||| ||||||||||||| Sbjct: 8976600 tcctcttcccttcgcggcggcgtc 8976577
>gb|AF222801.1|AF222801 Mus musculus traube mRNA, complete cds Length = 1844 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 catctttctcctcttcccct 41 |||||||||||||||||||| Sbjct: 264 catctttctcctcttcccct 245
>dbj|AB181459.1| Gibberella zeae genes for hypothetical protein similar to CG15021, hypothetical protein similar to beta-D-galactosidase, hypothetical protein similar to putative membrane protein, complete cds Length = 7931 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 gaggagctgcagcgggcgtgggag 386 |||||||||||||||| ||||||| Sbjct: 437 gaggagctgcagcgggagtgggag 460
>gb|CY005851.1| Influenza A virus (A/mallard/Netherlands/12/2000(H7N3)) segment 1, complete sequence Length = 2341 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 342 gggaccagcagcgtgtacctcgaggagctgca 373 ||||| |||||||||||| |||||| |||||| Sbjct: 694 gggacaagcagcgtgtacatcgaggtgctgca 725
>dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0049G15 Length = 155303 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 tcctcttcccctcgcggcggcgtc 53 |||||||||| ||||||||||||| Sbjct: 78262 tcctcttcccttcgcggcggcgtc 78239 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,062,706 Number of Sequences: 3902068 Number of extensions: 3062706 Number of successful extensions: 59032 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58671 Number of HSP's gapped (non-prelim): 360 length of query: 429 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 407 effective length of database: 17,147,199,772 effective search space: 6978910307204 effective search space used: 6978910307204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
