ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl39a03 |
|---|---|
| Clone Library Name | barley_pub |
>TNPO3_HUMAN (Q9Y5L0) Transportin 3 (Transportin-SR) (TRN-SR) (Importin 12)| Length = 975 Score = 37.0 bits (84), Expect = 0.028 Identities = 24/67 (35%), Positives = 31/67 (46%) Frame = +2 Query: 125 AVHALNHASHPSARLAANQWLLGLQRSPQAWXXXXXXXXXXDHPAPSVDLLFFAAQMLRR 304 AV AL H PS + A+ WL LQRS AW V+ +FAAQ ++ Sbjct: 14 AVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQ----DVESCYFAAQTMKM 69 Query: 305 MIQSPDY 325 IQ+ Y Sbjct: 70 KIQTSFY 76
>TNPO3_MOUSE (Q6P2B1) Transportin 3| Length = 923 Score = 37.0 bits (84), Expect = 0.028 Identities = 24/67 (35%), Positives = 31/67 (46%) Frame = +2 Query: 125 AVHALNHASHPSARLAANQWLLGLQRSPQAWXXXXXXXXXXDHPAPSVDLLFFAAQMLRR 304 AV AL H PS + A+ WL LQRS AW V+ +FAAQ ++ Sbjct: 14 AVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQ----DVESCYFAAQTMKM 69 Query: 305 MIQSPDY 325 IQ+ Y Sbjct: 70 KIQTSFY 76
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 33.9 bits (76), Expect = 0.24 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +3 Query: 21 PTRIHPPTHAPTSQPPGRQRWTSPSHRTS-RLSSPRPCTHLITPRIPPHV*PPT 179 P PPTH P+ +PP + T P + S + P P T+ TP+ PP PPT Sbjct: 174 PPVTKPPTHTPSPKPP-TSKPTPPVYTPSPKPPKPSPPTYTPTPK-PPATKPPT 225 Score = 33.9 bits (76), Expect = 0.24 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = +3 Query: 21 PTRIHPPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRIPPHV*PPT 179 P PPT+ P+ +PP + T P+ + P P + +P+ PP PPT Sbjct: 109 PKASTPPTYTPSPKPPATKPPTYPTPKPPATKPPTPPVYTPSPK-PPVTKPPT 160 Score = 33.5 bits (75), Expect = 0.31 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +3 Query: 21 PTRIHPPTHAPTSQPPGRQRWTS-PSHRTSRLSSPRPCTHLITPRIPPHV*PP 176 P + PPT+ PT +PP + TS P+H +P P H T + P PP Sbjct: 204 PPKPSPPTYTPTPKPPATKPPTSTPTHPKPTPHTPYPQAHPPTYKPAPKPSPP 256
>KI13B_HUMAN (Q9NQT8) Kinesin-like protein KIF13B (Kinesin-like protein GAKIN)| Length = 1826 Score = 32.7 bits (73), Expect = 0.53 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +3 Query: 36 PPTHAPTSQPPGRQRWTSPSHRTSRLSSPRP 128 PPT P +PPG Q+ SP L +P P Sbjct: 1612 PPTAVPAEEPPGPQQLVSPGRERPDLEAPAP 1642
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 32.3 bits (72), Expect = 0.70 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = +3 Query: 39 PTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRI---PPH 164 P APT+ PP R SP H R + P P + P + PPH Sbjct: 51 PPSAPTTTPPSRGHVPSPRHAPPRHAYPPPSHGHLPPSVGGPPPH 95
>BAGS_BOMMO (Q9BLJ6) BAG domain-containing protein Samui| Length = 677 Score = 31.6 bits (70), Expect = 1.2 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +3 Query: 36 PPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLIT 146 PP +P QPP ++ T P +T + SS P T +++ Sbjct: 350 PPPKSPQQQPPPQREQTPPQPKTQQPSSNDPITQILS 386
>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein| Length = 346 Score = 31.2 bits (69), Expect = 1.6 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Frame = +3 Query: 15 RFPTRIHPP-THAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHL---ITPRIPPHV*PPT 179 + P ++ PP T P +PP + S+P+ ++ TP+ PPHV PP+ Sbjct: 21 KLPPKVKPPSTQPPHVKPPSTPKHPKDPPHVKPPSTPKQPPYVKPPTTPKHPPHVKPPS 79
>KAR9_YEAST (P32526) Karyogamy protein KAR9 (Cortical protein KAR9)| Length = 644 Score = 31.2 bits (69), Expect = 1.6 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +3 Query: 36 PPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPR 152 PPT T P Q W + R +RL P P + L++PR Sbjct: 599 PPTKITT---PNSQVWVPSTRRRTRLRPPTPLSQLLSPR 634
>YNR7_SCHPO (Q9USZ2) Hypothetical protein C11G11.07 in chromosome II| Length = 955 Score = 30.8 bits (68), Expect = 2.0 Identities = 21/65 (32%), Positives = 30/65 (46%) Frame = +2 Query: 116 LAAAVHALNHASHPSARLAANQWLLGLQRSPQAWXXXXXXXXXXDHPAPSVDLLFFAAQM 295 L +A+ L + +L AN +L Q+SP AW D S++ FAAQ Sbjct: 4 LLSALATLYANTDREQKLQANNYLEEFQKSPAAWQICFSILNQDD---SSIEAKLFAAQT 60 Query: 296 LRRMI 310 LR+ I Sbjct: 61 LRQKI 65
>IDI2_CHLCH (Q3AQM4) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 357 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = +2 Query: 80 MDVAESPDIQAQLAAAVHALNHASHPSARLAA-NQWLLGLQ 199 MDVA+S + AQLAA+ L HA H A QWL L+ Sbjct: 295 MDVAKSLAMGAQLAASARHLLHALHAGTLTATIEQWLNDLK 335
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 30.0 bits (66), Expect = 3.5 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +3 Query: 27 RIHPPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRIPP 161 R H P+ + + P RQ+ TSP R R SP P +P P Sbjct: 521 RRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAP 565
>SYE_LEGPA (Q5X3Z5) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 470 Score = 30.0 bits (66), Expect = 3.5 Identities = 18/44 (40%), Positives = 24/44 (54%) Frame = -2 Query: 475 EKPVYPSLRAERQRREGQADLREQPGRGKAETARCDKERVEELR 344 E P Y + R R ++ Q L+E GKA +C KER+E LR Sbjct: 70 EGPYYQTERYARYQQVAQQLLKE----GKAYRCQCSKERLEALR 109
>AROC_METKA (Q8TXN1) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 386 Score = 29.6 bits (65), Expect = 4.5 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -2 Query: 412 REQPGRGKAETARCDKERVEELRGVVQERVVG 317 R +PG+ T R +++RVE L GV + R +G Sbjct: 45 RRRPGQSGVSTPRSERDRVEILSGVHEGRTLG 76
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 29.6 bits (65), Expect = 4.5 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +1 Query: 22 PPESIHLRTRPPPSRLGGSDGRRR 93 PP+S H R PPP R GG RR Sbjct: 94 PPDSHHSRRGPPPRRYGGGGYGRR 117
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 29.6 bits (65), Expect = 4.5 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +1 Query: 22 PPESIHLRTRPPPSRLGGSDGRRR 93 PP+S H R PPP R GG RR Sbjct: 94 PPDSHHSRRGPPPRRYGGGGYGRR 117
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 29.6 bits (65), Expect = 4.5 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +1 Query: 22 PPESIHLRTRPPPSRLGGSDGRRR 93 PP+S H R PPP R GG RR Sbjct: 94 PPDSHHSRRGPPPRRYGGGGYGRR 117
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 29.6 bits (65), Expect = 4.5 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +1 Query: 22 PPESIHLRTRPPPSRLGGSDGRRR 93 PP+S H R PPP R GG RR Sbjct: 94 PPDSHHSRRGPPPRRYGGGGYGRR 117
>EXTN_MAIZE (P14918) Extensin precursor (Proline-rich glycoprotein)| Length = 267 Score = 29.6 bits (65), Expect = 4.5 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Frame = +3 Query: 36 PPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRI------PPHV*PPT 179 PPT+ P+ +PP + T + SP+P T TP PP PPT Sbjct: 71 PPTYTPSPKPPATKPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPT 124 Score = 29.6 bits (65), Expect = 4.5 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Frame = +3 Query: 36 PPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRI------PPHV*PPT 179 PPT+ P+ +PP + T + SP+P T TP PP PPT Sbjct: 34 PPTYTPSPKPPASKPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPT 87 Score = 28.9 bits (63), Expect = 7.7 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = +3 Query: 36 PPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRIPPHV*PPT 179 PPT+ P+ +PP T P P P T+ TP+ PP PPT Sbjct: 212 PPTYTPSPKPPA----TKPP-----TPKPTPPTYTPTPK-PPATKPPT 249 Score = 28.9 bits (63), Expect = 7.7 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +3 Query: 36 PPTHAPTSQPPGRQRWTSPSHRTS-RLSSPRPCTHLITPR-IPPHV*PPT 179 PPT+ P+ +PP + T P++ S + +P+P TP PP PPT Sbjct: 180 PPTYTPSPKPP-TPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPT 228
>SYE_LEGPL (Q5WVE0) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 470 Score = 29.3 bits (64), Expect = 5.9 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = -2 Query: 475 EKPVYPSLRAERQRREGQADLREQPGRGKAETARCDKERVEELR 344 E P Y + R R ++ Q L E GKA +C KER+E LR Sbjct: 70 EGPYYQTERYARYQQVAQQLLEE----GKAYRCQCSKERLEALR 109
>SYE_LEGPH (Q5ZU96) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 470 Score = 29.3 bits (64), Expect = 5.9 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = -2 Query: 475 EKPVYPSLRAERQRREGQADLREQPGRGKAETARCDKERVEELR 344 E P Y + R R ++ Q L E GKA +C KER+E LR Sbjct: 70 EGPYYQTERYARYQQVAQQLLEE----GKAYRCQCSKERLEALR 109
>REN3A_HUMAN (Q9H1J1) Regulator of nonsense transcripts 3A (Nonsense mRNA| reducing factor 3A) (Up-frameshift suppressor 3 homolog A) (hUpf3) Length = 476 Score = 29.3 bits (64), Expect = 5.9 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -2 Query: 451 RAERQRREGQAD-LREQPGRGKAETARCDKERVEELRGVVQERV 323 R ER+RRE + LRE+ R + E RC K+ ++ + + ++ V Sbjct: 236 REERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEV 279
>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein| Length = 977 Score = 28.9 bits (63), Expect = 7.7 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Frame = +3 Query: 6 ISSRFPTRIHP-----PTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRIPPHV* 170 +SS+ PT + P+HAP S P R + P TS L P P + P Sbjct: 510 LSSQGPTPLPSFTSGVPSHAPVSGSPSTPRSSGPVTATSSLYIPAPSRPVTPGGAPEPPA 569 Query: 171 PPT 179 PP+ Sbjct: 570 PPS 572
>AROC_METTH (O26843) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 374 Score = 28.9 bits (63), Expect = 7.7 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -2 Query: 412 REQPGRGKAETARCDKERVEELRGVVQERVVG 317 R +PG G T R + +RVE L G+ + R G Sbjct: 54 RRRPGTGALTTPRAESDRVEILSGIFRGRTDG 85
>SYE1_THETN (Q8RB93) Glutamyl-tRNA synthetase 1 (EC 6.1.1.17) (Glutamate--tRNA| ligase 1) (GluRS 1) Length = 481 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = -2 Query: 475 EKPVYPSLRAERQRREGQADLREQPGRGKAETARCDKERVEELR 344 E P+Y S R + R+ L E GKA C KE +EE+R Sbjct: 72 EGPIYQSQRLDEYRKFANKLLEE----GKAYYCFCTKEELEEMR 111
>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor| Length = 307 Score = 28.9 bits (63), Expect = 7.7 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = +3 Query: 21 PTRIHPPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPC 131 PT P T PT+ P + T+ T++ ++P+PC Sbjct: 223 PTTTKPTTTKPTTTKPTTTKPTTTKPTTTKPTTPKPC 259
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 28.9 bits (63), Expect = 7.7 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 14/71 (19%) Frame = +3 Query: 6 ISSRFPTRIHPPTHAPT--SQPPGRQ-------RWTSPSHRTSRLSSPR-----PCTHLI 143 +S R HP + +PT SQ P R+ R SP+ R R SSPR P H Sbjct: 71 LSPRDQPHSHPRSRSPTPRSQSPSRRSVRSPSPRQGSPARRVDRSSSPRARSPPPRRHSR 130 Query: 144 TPRIPPHV*PP 176 +P + PP Sbjct: 131 SPPLRGQPPPP 141
>IF2_IDILO (Q5QTY8) Translation initiation factor IF-2| Length = 896 Score = 28.9 bits (63), Expect = 7.7 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = -2 Query: 454 LRAERQRREGQADLREQPGRGKAETARCDKERVEE 350 LR E ++RE + +E + KAE + +KE+ E+ Sbjct: 123 LREEEKQREEEQQRKEAEAKAKAEREKAEKEKAEK 157
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 28.9 bits (63), Expect = 7.7 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +1 Query: 22 PPESIHLRTRPPPSRLGGSDGRRR 93 PP+S H R PPP R G S RR Sbjct: 95 PPDSHHSRRGPPPRRYGSSGYGRR 118 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,238,836 Number of Sequences: 219361 Number of extensions: 881794 Number of successful extensions: 3502 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3462 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
