ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl39a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome... 119 9e-24
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 119 9e-24
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 119 9e-24
4gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 46 0.11
5gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 44 0.42
6ref|XM_477815.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
7emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.7
8emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 42 1.7
9gb|U77671.1|BBU77671 Bordetella bronchiseptica putative ferric s... 42 1.7
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
11gb|AC121540.14| Mus musculus chromosome 3, clone RP23-48L9, comp... 42 1.7
12dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.7
13dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.7
14dbj|AP005783.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
15dbj|AP005101.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
16ref|XM_473266.1| Oryza sativa (japonica cultivar-group), predic... 40 6.6
17gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 6.6
18gb|BC053136.1| Danio rerio zgc:77398, mRNA (cDNA clone IMAGE:678... 40 6.6
19gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 6.6
20ref|XM_838476.1| Leishmania major strain Friedlin hypothetical p... 40 6.6
21emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.6
22emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete ... 40 6.6
23emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4,... 40 6.6
24gb|BC065604.1| Danio rerio zgc:77398, mRNA (cDNA clone MGC:77398... 40 6.6
25gb|AF440695.1| Virus PhiCh1, complete genome 40 6.6
26gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.6
27gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.6
28dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
29gb|AF139987.1|AF139987 Mus musculus LIM-kinase1 (Limk1) gene, co... 40 6.6
30dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.6
31gb|AE004444.1| Pseudomonas aeruginosa PAO1, section 5 of 529 of ... 40 6.6
32gb|AF289664.1|AF289664 Mus musculus CYLN2, RFC2, WBSCR15, and EI... 40 6.6
33ref|NM_205664.1| Danio rerio zgc:77398 (zgc:77398), mRNA 40 6.6
34dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 6.6
35dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.6
36dbj|AK121532.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
37emb|X65098.1|HSVPHHPL H.salinarium virus phi H immunity conferri... 40 6.6
38emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 6.6
39gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 6.6
40emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4,... 40 6.6
41gb|AC166938.5| Mus musculus BAC clone RP23-85H24 from chromosome... 40 6.6 
>gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019A16,
              complete sequence
          Length = 175425

 Score =  119 bits (60), Expect = 9e-24
 Identities = 111/128 (86%)
 Strand = Plus / Minus

                                                                          
Query: 350    ctcctcgacgcgctccttgtcgcagcgcgccgtttctgccttgcccctccccggctgctc 409
              |||||||||||||||||  |||| ||| | || |||||||| | ||| || |||||||||
Sbjct: 148020 ctcctcgacgcgctcctcctcgcggcggggcggttctgcctcggcccgccgcggctgctc 147961

                                                                          
Query: 410    acgcagatctgcctggccctcgcggcgctggcgctccgcgcggagggaggggtagacggg 469
              |||||||||| |||||| ||||||||||||||||||||||| ||||| ||||| ||||| 
Sbjct: 147960 acgcagatctccctggcgctcgcggcgctggcgctccgcgccgagggcggggtggacggc 147901

                      
Query: 470    cttttcgc 477
              || |||||
Sbjct: 147900 ctcttcgc 147893



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                            
Query: 173    gccaaccagtggctcctcggcctacagcgctcgccgcaggcgtggg 218
              |||||||||||||||||||  || ||||| ||||||||||||||||
Sbjct: 148218 gccaaccagtggctcctcgcgctgcagcggtcgccgcaggcgtggg 148173



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 275    ctcttcttcgccgcccagatgcttcgccggatgatccagt 314
              |||||||||||||| |||||||| ||  ||| ||||||||
Sbjct: 148110 ctcttcttcgccgcgcagatgctccggaggaagatccagt 148071
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  119 bits (60), Expect = 9e-24
 Identities = 111/128 (86%)
 Strand = Plus / Minus

                                                                            
Query: 350      ctcctcgacgcgctccttgtcgcagcgcgccgtttctgccttgcccctccccggctgctc 409
                |||||||||||||||||  |||| ||| | || |||||||| | ||| || |||||||||
Sbjct: 19279232 ctcctcgacgcgctcctcctcgcggcggggcggttctgcctcggcccgccgcggctgctc 19279173

                                                                            
Query: 410      acgcagatctgcctggccctcgcggcgctggcgctccgcgcggagggaggggtagacggg 469
                |||||||||| |||||| ||||||||||||||||||||||| ||||| ||||| ||||| 
Sbjct: 19279172 acgcagatctccctggcgctcgcggcgctggcgctccgcgccgagggcggggtggacggc 19279113

                        
Query: 470      cttttcgc 477
                || |||||
Sbjct: 19279112 ctcttcgc 19279105



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 173      gccaaccagtggctcctcggcctacagcgctcgccgcaggcgtggg 218
                |||||||||||||||||||  || ||||| ||||||||||||||||
Sbjct: 19279430 gccaaccagtggctcctcgcgctgcagcggtcgccgcaggcgtggg 19279385



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 275      ctcttcttcgccgcccagatgcttcgccggatgatccagt 314
                |||||||||||||| |||||||| ||  ||| ||||||||
Sbjct: 19279322 ctcttcttcgccgcgcagatgctccggaggaagatccagt 19279283
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  119 bits (60), Expect = 9e-24
 Identities = 111/128 (86%)
 Strand = Plus / Minus

                                                                            
Query: 350      ctcctcgacgcgctccttgtcgcagcgcgccgtttctgccttgcccctccccggctgctc 409
                |||||||||||||||||  |||| ||| | || |||||||| | ||| || |||||||||
Sbjct: 19438781 ctcctcgacgcgctcctcctcgcggcggggcggttctgcctcggcccgccgcggctgctc 19438722

                                                                            
Query: 410      acgcagatctgcctggccctcgcggcgctggcgctccgcgcggagggaggggtagacggg 469
                |||||||||| |||||| ||||||||||||||||||||||| ||||| ||||| ||||| 
Sbjct: 19438721 acgcagatctccctggcgctcgcggcgctggcgctccgcgccgagggcggggtggacggc 19438662

                        
Query: 470      cttttcgc 477
                || |||||
Sbjct: 19438661 ctcttcgc 19438654



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 173      gccaaccagtggctcctcggcctacagcgctcgccgcaggcgtggg 218
                |||||||||||||||||||  || ||||| ||||||||||||||||
Sbjct: 19438979 gccaaccagtggctcctcgcgctgcagcggtcgccgcaggcgtggg 19438934



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 275      ctcttcttcgccgcccagatgcttcgccggatgatccagt 314
                |||||||||||||| |||||||| ||  ||| ||||||||
Sbjct: 19438871 ctcttcttcgccgcgcagatgctccggaggaagatccagt 19438832
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 422     ctggccctcgcggcgctggcgct 444
               |||||||||||||||||||||||
Sbjct: 1830680 ctggccctcgcggcgctggcgct 1830658
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 342     ccgcgcagctcctcgacgcgctccttgtcg 371
               ||||||||| |||||||||||||| |||||
Sbjct: 1036561 ccgcgcagcacctcgacgcgctccatgtcg 1036532
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>ref|XM_477815.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 309

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 451 ggagggaggggtagacgggct 471
           |||||||||||||||||||||
Sbjct: 12  ggagggaggggtagacgggct 32
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>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 340    cgccgcgcagctcctcgacgcgctc 364
              ||||||||||| |||||||||||||
Sbjct: 213185 cgccgcgcagcacctcgacgcgctc 213161
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>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 340    cgccgcgcagctcctcgacgcgctc 364
              ||||||||||| |||||||||||||
Sbjct: 125211 cgccgcgcagcacctcgacgcgctc 125187
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>gb|U77671.1|BBU77671 Bordetella bronchiseptica putative ferric siderophore receptor
           (bfrB) gene, complete cds
          Length = 2670

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 340 cgccgcgcagctcctcgacgcgctc 364
           ||||||||||| |||||||||||||
Sbjct: 715 cgccgcgcagcacctcgacgcgctc 691
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 451      ggagggaggggtagacgggct 471
                |||||||||||||||||||||
Sbjct: 14610337 ggagggaggggtagacgggct 14610357
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>gb|AC121540.14| Mus musculus chromosome 3, clone RP23-48L9, complete sequence
          Length = 224634

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 381   gtttctgccttgcccctcccc 401
             |||||||||||||||||||||
Sbjct: 73344 gtttctgccttgcccctcccc 73364
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 341     gccgcgcagctcctcgacgcgctcc 365
               |||||||||| ||||||||||||||
Sbjct: 5454499 gccgcgcagcacctcgacgcgctcc 5454523



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 429     tcgcggcgctggcgctccgcgcggaggg 456
               ||||||||||||||||| |||| |||||
Sbjct: 3475629 tcgcggcgctggcgctcggcgccgaggg 3475602
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 112    tcagctcgccgcggccgtgca 132
              |||||||||||||||||||||
Sbjct: 370836 tcagctcgccgcggccgtgca 370856
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>dbj|AP005783.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0095H08
          Length = 140777

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 451    ggagggaggggtagacgggct 471
              |||||||||||||||||||||
Sbjct: 123602 ggagggaggggtagacgggct 123622
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>dbj|AP005101.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBa0026I22
          Length = 143302

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 451  ggagggaggggtagacgggct 471
            |||||||||||||||||||||
Sbjct: 3335 ggagggaggggtagacgggct 3355
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>ref|XM_473266.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1338

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 116 ctcgccgcggccgtgcacgc 135
           ||||||||||||||||||||
Sbjct: 450 ctcgccgcggccgtgcacgc 469
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 353     ctcgacgcgctccttgtcgcagcg 376
               ||||||||||||||||||| ||||
Sbjct: 1837977 ctcgacgcgctccttgtcgaagcg 1837954
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>gb|BC053136.1| Danio rerio zgc:77398, mRNA (cDNA clone IMAGE:6789857), partial cds
          Length = 1361

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 343  cgcgcagctcctcgacgcgc 362
            ||||||||||||||||||||
Sbjct: 1002 cgcgcagctcctcgacgcgc 983
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    cctggccctcgcggcgctgg 440
              ||||||||||||||||||||
Sbjct: 437321 cctggccctcgcggcgctgg 437340
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>ref|XM_838476.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1394)
           partial mRNA
          Length = 1476

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 353 ctcgacgcgctccttgtcgcagcg 376
           ||||||||||||||||||| ||||
Sbjct: 783 ctcgacgcgctccttgtcgaagcg 760
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 369     tcgcagcgcgccgtttctgccttg 392
               ||||||||||||| ||||||||||
Sbjct: 1169272 tcgcagcgcgccgattctgccttg 1169249
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>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    cctcgacgcgctccttgtcg 371
              ||||||||||||||||||||
Sbjct: 237562 cctcgacgcgctccttgtcg 237581
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>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
             complete sequence
          Length = 140454

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   ctcgccgcggccgtgcacgc 135
             ||||||||||||||||||||
Sbjct: 15310 ctcgccgcggccgtgcacgc 15329
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>gb|BC065604.1| Danio rerio zgc:77398, mRNA (cDNA clone MGC:77398 IMAGE:6969640),
            complete cds
          Length = 1402

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 343  cgcgcagctcctcgacgcgc 362
            ||||||||||||||||||||
Sbjct: 1025 cgcgcagctcctcgacgcgc 1006
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>gb|AF440695.1| Virus PhiCh1, complete genome
          Length = 58498

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   cagctcctcgacgcgctcct 366
             ||||||||||||||||||||
Sbjct: 30756 cagctcctcgacgcgctcct 30737
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 429     tcgcggcgctggcgctccgcgcgg 452
               |||||||||||||||||| |||||
Sbjct: 2700599 tcgcggcgctggcgctcctcgcgg 2700576
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 100     ggacatccaggctcagctcgccgc 123
               |||||||||||| |||||||||||
Sbjct: 2833843 ggacatccaggcgcagctcgccgc 2833820
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 116      ctcgccgcggccgtgcacgc 135
                ||||||||||||||||||||
Sbjct: 26478423 ctcgccgcggccgtgcacgc 26478442
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>gb|AF139987.1|AF139987 Mus musculus LIM-kinase1 (Limk1) gene, complete cds; Wbscr1 (Wbscr1)
             gene, alternative splice products, complete cds; Wbscr5
             (Wbscr5) gene, alternative splice products, complete cds;
             and replication factor C, 40kDa subunit (Rfc2) gene,
             complete cds
          Length = 114898

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     caaatctcctctcgcttccccacc 26
             ||||||||||||| ||||||||||
Sbjct: 80000 caaatctcctctcccttccccacc 80023
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 421   cctggccctcgcggcgctggcgct 444
             |||||||||||| |||||||||||
Sbjct: 37868 cctggccctcgccgcgctggcgct 37891
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>gb|AE004444.1| Pseudomonas aeruginosa PAO1, section 5 of 529 of the complete genome
          Length = 10060

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 422  ctggccctcgcggcgctggc 441
            ||||||||||||||||||||
Sbjct: 3252 ctggccctcgcggcgctggc 3233
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>gb|AF289664.1|AF289664 Mus musculus CYLN2, RFC2, WBSCR15, and EIF4H genes, complete cds
          Length = 161852

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 3      caaatctcctctcgcttccccacc 26
              ||||||||||||| ||||||||||
Sbjct: 130994 caaatctcctctcccttccccacc 130971
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>ref|NM_205664.1| Danio rerio zgc:77398 (zgc:77398), mRNA
          Length = 1402

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 343  cgcgcagctcctcgacgcgc 362
            ||||||||||||||||||||
Sbjct: 1025 cgcgcagctcctcgacgcgc 1006
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    aggctcagctcgccgcggcc 127
              ||||||||||||||||||||
Sbjct: 697061 aggctcagctcgccgcggcc 697042
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 398     ccccggctgctcacgcagatctgc 421
               |||||||||||| |||||||||||
Sbjct: 3893862 ccccggctgctcgcgcagatctgc 3893839
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>dbj|AK121532.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030P20, full
           insert sequence
          Length = 1683

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 116 ctcgccgcggccgtgcacgc 135
           ||||||||||||||||||||
Sbjct: 566 ctcgccgcggccgtgcacgc 585
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>emb|X65098.1|HSVPHHPL H.salinarium virus phi H immunity conferring plasmid pPHIHL DNA
          Length = 12041

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 347 cagctcctcgacgcgctcct 366
           ||||||||||||||||||||
Sbjct: 707 cagctcctcgacgcgctcct 688
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 373     agcgcgccgtttctgccttgcccc 396
               ||||| ||||||||||||||||||
Sbjct: 4954170 agcgcaccgtttctgccttgcccc 4954147



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 425    gccctcgcggcgctggcgct 444
              ||||||||||||||||||||
Sbjct: 554053 gccctcgcggcgctggcgct 554072
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 205     gccgcaggcgtgggcgctgt 224
               ||||||||||||||||||||
Sbjct: 1957952 gccgcaggcgtgggcgctgt 1957933
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>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
              complete sequence
          Length = 171551

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    ctcgccgcggccgtgcacgc 135
              ||||||||||||||||||||
Sbjct: 119063 ctcgccgcggccgtgcacgc 119082
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>gb|AC166938.5| Mus musculus BAC clone RP23-85H24 from chromosome 5, complete sequence
          Length = 231866

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     caaatctcctctcgcttccccacc 26
             ||||||||||||| ||||||||||
Sbjct: 97468 caaatctcctctcccttccccacc 97491


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,789,055
Number of Sequences: 3902068
Number of extensions: 2789055
Number of successful extensions: 61653
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59749
Number of HSP's gapped (non-prelim): 1904
length of query: 488
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 466
effective length of database: 17,147,199,772
effective search space: 7990595093752
effective search space used: 7990595093752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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