ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl39a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1METE_BIFLO (Q8G651) 5-methyltetrahydropteroyltriglutamate--homoc... 29 7.8
2COX10_SCHPO (Q9Y7Y4) Protoheme IX farnesyltransferase, mitochond... 29 7.8
3GUAA_PHOLL (Q7N3K4) GMP synthase [glutamine-hydrolyzing] (EC 6.3... 29 7.8

>METE_BIFLO (Q8G651) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 767

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 240 HEAEVELEASGAVVDGHRPRTPSE 169
           H+A  E EA   V D H PR PSE
Sbjct: 689 HDAHFETEAGPGVYDIHSPRIPSE 712



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>COX10_SCHPO (Q9Y7Y4) Protoheme IX farnesyltransferase, mitochondrial precursor|
           (EC 2.5.1.-) (Heme O synthase)
          Length = 387

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -1

Query: 454 LYHRPCAKNWVSICWFFVPGDLRYRCHFPTHILHRRLSIVCSLRKTCSISPSP 296
           +Y RPC K +    +    G L      PTHI + RLS + +   T + +P P
Sbjct: 14  IYTRPCLKRFYHQHYEHT-GKLSRTFFSPTHIKYNRLSTLDTSTSTANAAPDP 65



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>GUAA_PHOLL (Q7N3K4) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 525

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 103 HELLAASGGGDVRVTLYEQEESLGGRARTVAVDDGAGRL 219
           H +L  SGG D  VT      ++G R   V VD+G  RL
Sbjct: 229 HVILGLSGGVDSSVTALLLHRAIGNRLTCVFVDNGLLRL 267


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,450,081
Number of Sequences: 219361
Number of extensions: 995008
Number of successful extensions: 3097
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3096
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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