Clone Name | bastl38h12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 161 bits (81), Expect = 2e-36 Identities = 186/221 (84%) Strand = Plus / Plus Query: 7 aaatcacggaagtatgatcagagagctctgcaaacgaaccttgatgacttcgccgcgata 66 ||||| || |||||||| |||| |||||||||||| |||||||| |||| ||| || ||| Sbjct: 20480977 aaatctcgcaagtatgaccagaaagctctgcaaacaaaccttgacgactacgcagcaata 20481036 Query: 67 gataaccataatattggcttgatatacctgcgtcgcaacctagtggaagagttgataggt 126 ||||||||||| || | || || ||||||||||||||||| | ||||| ||||| || Sbjct: 20481037 gataaccataacatcagtttaatgtacctgcgtcgcaacctgttagaagaattgatcagt 20481096 Query: 127 gatgctgacacatttagtgagaaagtacttggagcatttgtgagaatacgtatatctggt 186 || | |||||||||| ||||||||| ||||| |||||||||||||| | |||||||| Sbjct: 20481097 gaagttgacacatttgatgagaaagttcttgggtcatttgtgagaataagaatatctgga 20481156 Query: 187 acaggtcaaaggcaagacatctatcgacttgtgcagattgt 227 ||||||||||||||||||||||| || || ||||| ||||| Sbjct: 20481157 acaggtcaaaggcaagacatctaccggctcgtgcaaattgt 20481197 Score = 117 bits (59), Expect = 3e-23 Identities = 94/106 (88%) Strand = Plus / Plus Query: 253 tataaatgtgggaaaaagacaactgacataacattagagatactaaacttggacaagaaa 312 |||||||||||||||||| | ||||| |||||| | ||||| |||||||| ||||||| | Sbjct: 20481298 tataaatgtgggaaaaagtcgactgatataacactggagattctaaacttagacaagaga 20481357 Query: 313 gaggttattactattgacataacctcanatcaagaattcactgagg 358 ||||||||||||||||| ||||||||| | ||||| |||||||||| Sbjct: 20481358 gaggttattactattgatataacctcaaaccaagagttcactgagg 20481403 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 381 aagcataaagtgtggattcatttcaaggctgacggtgg 418 |||||||||||||||||||||| |||||||||| |||| Sbjct: 20481696 aagcataaagtgtggattcattccaaggctgacagtgg 20481733
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1531_B07 Length = 115245 Score = 161 bits (81), Expect = 2e-36 Identities = 186/221 (84%) Strand = Plus / Plus Query: 7 aaatcacggaagtatgatcagagagctctgcaaacgaaccttgatgacttcgccgcgata 66 ||||| || |||||||| |||| |||||||||||| |||||||| |||| ||| || ||| Sbjct: 109116 aaatctcgcaagtatgaccagaaagctctgcaaacaaaccttgacgactacgcagcaata 109175 Query: 67 gataaccataatattggcttgatatacctgcgtcgcaacctagtggaagagttgataggt 126 ||||||||||| || | || || ||||||||||||||||| | ||||| ||||| || Sbjct: 109176 gataaccataacatcagtttaatgtacctgcgtcgcaacctgttagaagaattgatcagt 109235 Query: 127 gatgctgacacatttagtgagaaagtacttggagcatttgtgagaatacgtatatctggt 186 || | |||||||||| ||||||||| ||||| |||||||||||||| | |||||||| Sbjct: 109236 gaagttgacacatttgatgagaaagttcttgggtcatttgtgagaataagaatatctgga 109295 Query: 187 acaggtcaaaggcaagacatctatcgacttgtgcagattgt 227 ||||||||||||||||||||||| || || ||||| ||||| Sbjct: 109296 acaggtcaaaggcaagacatctaccggctcgtgcaaattgt 109336 Score = 117 bits (59), Expect = 3e-23 Identities = 94/106 (88%) Strand = Plus / Plus Query: 253 tataaatgtgggaaaaagacaactgacataacattagagatactaaacttggacaagaaa 312 |||||||||||||||||| | ||||| |||||| | ||||| |||||||| ||||||| | Sbjct: 109437 tataaatgtgggaaaaagtcgactgatataacactggagattctaaacttagacaagaga 109496 Query: 313 gaggttattactattgacataacctcanatcaagaattcactgagg 358 ||||||||||||||||| ||||||||| | ||||| |||||||||| Sbjct: 109497 gaggttattactattgatataacctcaaaccaagagttcactgagg 109542 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 381 aagcataaagtgtggattcatttcaaggctgacggtgg 418 |||||||||||||||||||||| |||||||||| |||| Sbjct: 109835 aagcataaagtgtggattcattccaaggctgacagtgg 109872
>gb|AC087358.9| Homo sapiens chromosome 8, clone RP11-442A17, complete sequence Length = 183097 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 63 gatagataaccataatattggcttgatata 92 ||||||||||||||||||||| || ||||| Sbjct: 123316 gatagataaccataatattggatttatata 123345
>gb|AF104000.1| Lagothrix lagotricha clone PEPL4 microsatellite sequence Length = 541 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 254 ataaatgtgggaaaaagacaa 274 ||||||||||||||||||||| Sbjct: 210 ataaatgtgggaaaaagacaa 190
>gb|AC122012.3| Mus musculus BAC clone RP24-353N4 from 5, complete sequence Length = 188867 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 ttgataggtgatgctgacaca 138 ||||||||||||||||||||| Sbjct: 107601 ttgataggtgatgctgacaca 107581
>gb|AC018890.13| Homo sapiens BAC clone RP11-493G24 from 2, complete sequence Length = 173965 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 aacctagtggaagagttgata 123 ||||||||||||||||||||| Sbjct: 100625 aacctagtggaagagttgata 100605
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 aacttggacaagaaagaggtt 318 ||||||||||||||||||||| Sbjct: 315706 aacttggacaagaaagaggtt 315726
>dbj|AB258056.1| Homo sapiens DNA, MLV integration site, partial sequence, clone: MLV-TPA-Mat-180 Length = 245 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 aacctagtggaagagttgata 123 ||||||||||||||||||||| Sbjct: 210 aacctagtggaagagttgata 190
>emb|AL732319.17| Mouse DNA sequence from clone RP23-180O4 on chromosome X, complete sequence Length = 151503 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 acaagaaagaggttattacta 325 ||||||||||||||||||||| Sbjct: 96503 acaagaaagaggttattacta 96523
>gb|AC166162.6| Mus musculus BAC clone RP23-436K10 from chromosome 6, complete sequence Length = 181038 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tgatgctgacacatttagtg 145 |||||||||||||||||||| Sbjct: 87330 tgatgctgacacatttagtg 87349
>gb|AC105067.8| Mus musculus chromosome 18, clone RP23-232D3, complete sequence Length = 186258 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 aaagtacttggagcatttgt 167 |||||||||||||||||||| Sbjct: 24697 aaagtacttggagcatttgt 24716
>ref|XM_874605.1| PREDICTED: Bos taurus similar to Probable diphthine synthase (Diphthamide biosynthesis methyltransferase), transcript variant 5 (LOC508904), mRNA Length = 1350 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 gacaagaaagaggttattactatt 327 ||||||||| |||||||||||||| Sbjct: 1257 gacaagaaaaaggttattactatt 1234
>ref|XM_585752.2| PREDICTED: Bos taurus similar to Probable diphthine synthase (Diphthamide biosynthesis methyltransferase), transcript variant 1 (LOC508904), mRNA Length = 1442 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 gacaagaaagaggttattactatt 327 ||||||||| |||||||||||||| Sbjct: 1351 gacaagaaaaaggttattactatt 1328
>ref|XM_874448.1| PREDICTED: Bos taurus similar to Probable diphthine synthase (Diphthamide biosynthesis methyltransferase), transcript variant 4 (LOC508904), mRNA Length = 1309 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 gacaagaaagaggttattactatt 327 ||||||||| |||||||||||||| Sbjct: 1216 gacaagaaaaaggttattactatt 1193
>ref|XM_874280.1| PREDICTED: Bos taurus similar to Probable diphthine synthase (Diphthamide biosynthesis methyltransferase), transcript variant 3 (LOC508904), mRNA Length = 1505 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 gacaagaaagaggttattactatt 327 ||||||||| |||||||||||||| Sbjct: 1412 gacaagaaaaaggttattactatt 1389
>gb|BC058578.1| Mus musculus chromodomain helicase DNA binding protein 4, mRNA (cDNA clone MGC:68269 IMAGE:6489649), complete cds Length = 6438 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tgatgctgacacatttagtg 145 |||||||||||||||||||| Sbjct: 3731 tgatgctgacacatttagtg 3750
>ref|NM_145979.1| Mus musculus chromodomain helicase DNA binding protein 4 (Chd4), mRNA Length = 6438 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tgatgctgacacatttagtg 145 |||||||||||||||||||| Sbjct: 3731 tgatgctgacacatttagtg 3750
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 392 gtggattcatttcaaggctgacgg 415 |||| ||||||||||||||||||| Sbjct: 2574157 gtggtttcatttcaaggctgacgg 2574134
>gb|AC141628.2| Mus musculus BAC clone RP24-358E15 from chromosome 18, complete sequence Length = 170129 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 aaagtacttggagcatttgt 167 |||||||||||||||||||| Sbjct: 18145 aaagtacttggagcatttgt 18126
>ref|XM_747936.1| Aspergillus fumigatus Af293 C6 transcription factor (Afu1g16620) partial mRNA Length = 1512 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 tgagaaagtacttggagcat 163 |||||||||||||||||||| Sbjct: 1334 tgagaaagtacttggagcat 1315
>emb|AL512664.8| Human DNA sequence from clone RP11-1A10 on chromosome 9, complete sequence Length = 133927 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 tggattcatttcaaggctga 412 |||||||||||||||||||| Sbjct: 43739 tggattcatttcaaggctga 43720
>emb|AL391684.6| Human DNA sequence from clone RP11-441O15 on chromosome 10 Contains the CNNM1 gene for cyclin M1, the GOT1 gene for glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1), a novel gene and two CpG islands, complete sequence Length = 172792 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 acaggaacagctgctgagaa 251 |||||||||||||||||||| Sbjct: 133119 acaggaacagctgctgagaa 133100
>emb|Y16472.1|CAY16472 Clostridium argentinense rpoB gene, partial Length = 2723 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 agagatactaaacttggacaagaa 311 ||||||||||||||||||| |||| Sbjct: 1917 agagatactaaacttggaccagaa 1940
>emb|BX842643.1| Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4 Length = 346939 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gagatactaaacttggacaa 308 |||||||||||||||||||| Sbjct: 298162 gagatactaaacttggacaa 298181
>dbj|AK220473.1| Mus musculus mRNA for mKIAA4075 protein Length = 6337 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tgatgctgacacatttagtg 145 |||||||||||||||||||| Sbjct: 3639 tgatgctgacacatttagtg 3658
>dbj|AK153826.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:C920008E20 product:chromodomain helicase DNA binding protein 4, full insert sequence Length = 2779 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tgatgctgacacatttagtg 145 |||||||||||||||||||| Sbjct: 2489 tgatgctgacacatttagtg 2508
>dbj|AK147695.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1109D08 product:chromodomain helicase DNA binding protein 4, full insert sequence Length = 6660 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tgatgctgacacatttagtg 145 |||||||||||||||||||| Sbjct: 3875 tgatgctgacacatttagtg 3894
>gb|BC006035.1| Mus musculus chromodomain helicase DNA binding protein 4, mRNA (cDNA clone IMAGE:3492938), partial cds Length = 3010 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tgatgctgacacatttagtg 145 |||||||||||||||||||| Sbjct: 296 tgatgctgacacatttagtg 315
>dbj|AK039580.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330065K20 product:Warning: possibly chimeric clone, full insert sequence Length = 2740 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tgatgctgacacatttagtg 145 |||||||||||||||||||| Sbjct: 890 tgatgctgacacatttagtg 909
>dbj|AK034549.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430004K15 product:CHROMODOMAIN HELICASE-DNA-BINDING PROTEIN 4 (CHD-4) (MI-2 AUTOANTIGEN 218 KDA PROTEIN) (MI2-BETA) homolog [Homo sapiens], full insert sequence Length = 3137 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tgatgctgacacatttagtg 145 |||||||||||||||||||| Sbjct: 2812 tgatgctgacacatttagtg 2831
>gb|BC059082.1| Mus musculus chromodomain helicase DNA binding protein 4, mRNA (cDNA clone IMAGE:6827288), containing frame-shift errors Length = 4226 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tgatgctgacacatttagtg 145 |||||||||||||||||||| Sbjct: 1511 tgatgctgacacatttagtg 1530
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 285 attagagatactaaacttggacaagaaa 312 |||||||||||||||| || |||||||| Sbjct: 2160489 attagagatactaaacatgaacaagaaa 2160462
>emb|BX682544.5| Zebrafish DNA sequence from clone CH211-189G6 in linkage group 20, complete sequence Length = 163093 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 acaactgacataacattaga 290 |||||||||||||||||||| Sbjct: 157179 acaactgacataacattaga 157198
>gb|AC134529.6| Mus musculus BAC clone RP24-503A2 from chromosome 6, complete sequence Length = 166392 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tgatgctgacacatttagtg 145 |||||||||||||||||||| Sbjct: 158036 tgatgctgacacatttagtg 158055
>gb|AC126939.5| Mus musculus BAC clone RP23-62M8 from 13, complete sequence Length = 236514 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 tgtggattcatttcaaggct 410 |||||||||||||||||||| Sbjct: 95713 tgtggattcatttcaaggct 95732
>emb|AL513503.2|HS297A17 Homo sapiens chromosome 9 BAC RP11-297A17, complete sequence Length = 160758 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 tggattcatttcaaggctga 412 |||||||||||||||||||| Sbjct: 24585 tggattcatttcaaggctga 24604 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,278,136 Number of Sequences: 3902068 Number of extensions: 3278136 Number of successful extensions: 62586 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62481 Number of HSP's gapped (non-prelim): 105 length of query: 423 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 401 effective length of database: 17,147,199,772 effective search space: 6876027108572 effective search space used: 6876027108572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)