>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  161 bits (81), Expect = 2e-36
 Identities = 186/221 (84%)
 Strand = Plus / Plus

                                                                            
Query: 7        aaatcacggaagtatgatcagagagctctgcaaacgaaccttgatgacttcgccgcgata 66
                ||||| || |||||||| |||| |||||||||||| |||||||| |||| ||| || |||
Sbjct: 20480977 aaatctcgcaagtatgaccagaaagctctgcaaacaaaccttgacgactacgcagcaata 20481036

                                                                            
Query: 67       gataaccataatattggcttgatatacctgcgtcgcaacctagtggaagagttgataggt 126
                ||||||||||| ||  | || || |||||||||||||||||  | ||||| |||||  ||
Sbjct: 20481037 gataaccataacatcagtttaatgtacctgcgtcgcaacctgttagaagaattgatcagt 20481096

                                                                            
Query: 127      gatgctgacacatttagtgagaaagtacttggagcatttgtgagaatacgtatatctggt 186
                || | ||||||||||  ||||||||| |||||  |||||||||||||| | |||||||| 
Sbjct: 20481097 gaagttgacacatttgatgagaaagttcttgggtcatttgtgagaataagaatatctgga 20481156

                                                         
Query: 187      acaggtcaaaggcaagacatctatcgacttgtgcagattgt 227
                ||||||||||||||||||||||| || || ||||| |||||
Sbjct: 20481157 acaggtcaaaggcaagacatctaccggctcgtgcaaattgt 20481197



 Score =  117 bits (59), Expect = 3e-23
 Identities = 94/106 (88%)
 Strand = Plus / Plus

                                                                            
Query: 253      tataaatgtgggaaaaagacaactgacataacattagagatactaaacttggacaagaaa 312
                |||||||||||||||||| | ||||| |||||| | ||||| |||||||| ||||||| |
Sbjct: 20481298 tataaatgtgggaaaaagtcgactgatataacactggagattctaaacttagacaagaga 20481357

                                                              
Query: 313      gaggttattactattgacataacctcanatcaagaattcactgagg 358
                ||||||||||||||||| ||||||||| | ||||| ||||||||||
Sbjct: 20481358 gaggttattactattgatataacctcaaaccaagagttcactgagg 20481403



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                      
Query: 381      aagcataaagtgtggattcatttcaaggctgacggtgg 418
                |||||||||||||||||||||| |||||||||| ||||
Sbjct: 20481696 aagcataaagtgtggattcattccaaggctgacagtgg 20481733

>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1531_B07
          Length = 115245

 Score =  161 bits (81), Expect = 2e-36
 Identities = 186/221 (84%)
 Strand = Plus / Plus

                                                                          
Query: 7      aaatcacggaagtatgatcagagagctctgcaaacgaaccttgatgacttcgccgcgata 66
              ||||| || |||||||| |||| |||||||||||| |||||||| |||| ||| || |||
Sbjct: 109116 aaatctcgcaagtatgaccagaaagctctgcaaacaaaccttgacgactacgcagcaata 109175

                                                                          
Query: 67     gataaccataatattggcttgatatacctgcgtcgcaacctagtggaagagttgataggt 126
              ||||||||||| ||  | || || |||||||||||||||||  | ||||| |||||  ||
Sbjct: 109176 gataaccataacatcagtttaatgtacctgcgtcgcaacctgttagaagaattgatcagt 109235

                                                                          
Query: 127    gatgctgacacatttagtgagaaagtacttggagcatttgtgagaatacgtatatctggt 186
              || | ||||||||||  ||||||||| |||||  |||||||||||||| | |||||||| 
Sbjct: 109236 gaagttgacacatttgatgagaaagttcttgggtcatttgtgagaataagaatatctgga 109295

                                                       
Query: 187    acaggtcaaaggcaagacatctatcgacttgtgcagattgt 227
              ||||||||||||||||||||||| || || ||||| |||||
Sbjct: 109296 acaggtcaaaggcaagacatctaccggctcgtgcaaattgt 109336



 Score =  117 bits (59), Expect = 3e-23
 Identities = 94/106 (88%)
 Strand = Plus / Plus

                                                                          
Query: 253    tataaatgtgggaaaaagacaactgacataacattagagatactaaacttggacaagaaa 312
              |||||||||||||||||| | ||||| |||||| | ||||| |||||||| ||||||| |
Sbjct: 109437 tataaatgtgggaaaaagtcgactgatataacactggagattctaaacttagacaagaga 109496

                                                            
Query: 313    gaggttattactattgacataacctcanatcaagaattcactgagg 358
              ||||||||||||||||| ||||||||| | ||||| ||||||||||
Sbjct: 109497 gaggttattactattgatataacctcaaaccaagagttcactgagg 109542



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                    
Query: 381    aagcataaagtgtggattcatttcaaggctgacggtgg 418
              |||||||||||||||||||||| |||||||||| ||||
Sbjct: 109835 aagcataaagtgtggattcattccaaggctgacagtgg 109872

>gb|AC087358.9| Homo sapiens chromosome 8, clone RP11-442A17, complete sequence
          Length = 183097

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 63     gatagataaccataatattggcttgatata 92
              ||||||||||||||||||||| || |||||
Sbjct: 123316 gatagataaccataatattggatttatata 123345

>gb|AF104000.1| Lagothrix lagotricha clone PEPL4 microsatellite sequence
          Length = 541

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 254 ataaatgtgggaaaaagacaa 274
           |||||||||||||||||||||
Sbjct: 210 ataaatgtgggaaaaagacaa 190

>gb|AC122012.3| Mus musculus BAC clone RP24-353N4 from 5, complete sequence
          Length = 188867

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 118    ttgataggtgatgctgacaca 138
              |||||||||||||||||||||
Sbjct: 107601 ttgataggtgatgctgacaca 107581

>gb|AC018890.13| Homo sapiens BAC clone RP11-493G24 from 2, complete sequence
          Length = 173965

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 103    aacctagtggaagagttgata 123
              |||||||||||||||||||||
Sbjct: 100625 aacctagtggaagagttgata 100605

>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 298    aacttggacaagaaagaggtt 318
              |||||||||||||||||||||
Sbjct: 315706 aacttggacaagaaagaggtt 315726

>dbj|AB258056.1| Homo sapiens DNA, MLV integration site, partial sequence, clone:
           MLV-TPA-Mat-180
          Length = 245

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 103 aacctagtggaagagttgata 123
           |||||||||||||||||||||
Sbjct: 210 aacctagtggaagagttgata 190

>emb|AL732319.17| Mouse DNA sequence from clone RP23-180O4 on chromosome X, complete
             sequence
          Length = 151503

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 305   acaagaaagaggttattacta 325
             |||||||||||||||||||||
Sbjct: 96503 acaagaaagaggttattacta 96523

>gb|AC166162.6| Mus musculus BAC clone RP23-436K10 from chromosome 6, complete sequence
          Length = 181038

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   tgatgctgacacatttagtg 145
             ||||||||||||||||||||
Sbjct: 87330 tgatgctgacacatttagtg 87349

>gb|AC105067.8| Mus musculus chromosome 18, clone RP23-232D3, complete sequence
          Length = 186258

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   aaagtacttggagcatttgt 167
             ||||||||||||||||||||
Sbjct: 24697 aaagtacttggagcatttgt 24716

>ref|XM_874605.1| PREDICTED: Bos taurus similar to Probable diphthine synthase
            (Diphthamide biosynthesis methyltransferase), transcript
            variant 5 (LOC508904), mRNA
          Length = 1350

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 304  gacaagaaagaggttattactatt 327
            ||||||||| ||||||||||||||
Sbjct: 1257 gacaagaaaaaggttattactatt 1234

>ref|XM_585752.2| PREDICTED: Bos taurus similar to Probable diphthine synthase
            (Diphthamide biosynthesis methyltransferase), transcript
            variant 1 (LOC508904), mRNA
          Length = 1442

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 304  gacaagaaagaggttattactatt 327
            ||||||||| ||||||||||||||
Sbjct: 1351 gacaagaaaaaggttattactatt 1328

>ref|XM_874448.1| PREDICTED: Bos taurus similar to Probable diphthine synthase
            (Diphthamide biosynthesis methyltransferase), transcript
            variant 4 (LOC508904), mRNA
          Length = 1309

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 304  gacaagaaagaggttattactatt 327
            ||||||||| ||||||||||||||
Sbjct: 1216 gacaagaaaaaggttattactatt 1193

>ref|XM_874280.1| PREDICTED: Bos taurus similar to Probable diphthine synthase
            (Diphthamide biosynthesis methyltransferase), transcript
            variant 3 (LOC508904), mRNA
          Length = 1505

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 304  gacaagaaagaggttattactatt 327
            ||||||||| ||||||||||||||
Sbjct: 1412 gacaagaaaaaggttattactatt 1389

>gb|BC058578.1| Mus musculus chromodomain helicase DNA binding protein 4, mRNA (cDNA
            clone MGC:68269 IMAGE:6489649), complete cds
          Length = 6438

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  tgatgctgacacatttagtg 145
            ||||||||||||||||||||
Sbjct: 3731 tgatgctgacacatttagtg 3750

>ref|NM_145979.1| Mus musculus chromodomain helicase DNA binding protein 4 (Chd4), mRNA
          Length = 6438

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  tgatgctgacacatttagtg 145
            ||||||||||||||||||||
Sbjct: 3731 tgatgctgacacatttagtg 3750

>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 392     gtggattcatttcaaggctgacgg 415
               |||| |||||||||||||||||||
Sbjct: 2574157 gtggtttcatttcaaggctgacgg 2574134

>gb|AC141628.2| Mus musculus BAC clone RP24-358E15 from chromosome 18, complete
             sequence
          Length = 170129

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   aaagtacttggagcatttgt 167
             ||||||||||||||||||||
Sbjct: 18145 aaagtacttggagcatttgt 18126

>ref|XM_747936.1| Aspergillus fumigatus Af293 C6 transcription factor (Afu1g16620)
            partial mRNA
          Length = 1512

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  tgagaaagtacttggagcat 163
            ||||||||||||||||||||
Sbjct: 1334 tgagaaagtacttggagcat 1315

>emb|AL512664.8| Human DNA sequence from clone RP11-1A10 on chromosome 9, complete
             sequence
          Length = 133927

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   tggattcatttcaaggctga 412
             ||||||||||||||||||||
Sbjct: 43739 tggattcatttcaaggctga 43720

>emb|AL391684.6| Human DNA sequence from clone RP11-441O15 on chromosome 10 Contains the
              CNNM1 gene for cyclin M1, the GOT1 gene for
              glutamic-oxaloacetic transaminase 1, soluble (aspartate
              aminotransferase 1), a novel gene and two CpG islands,
              complete sequence
          Length = 172792

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 232    acaggaacagctgctgagaa 251
              ||||||||||||||||||||
Sbjct: 133119 acaggaacagctgctgagaa 133100

>emb|Y16472.1|CAY16472 Clostridium argentinense rpoB gene, partial
          Length = 2723

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 288  agagatactaaacttggacaagaa 311
            ||||||||||||||||||| ||||
Sbjct: 1917 agagatactaaacttggaccagaa 1940

>emb|BX842643.1| Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence;
              segment 2/4
          Length = 346939

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 289    gagatactaaacttggacaa 308
              ||||||||||||||||||||
Sbjct: 298162 gagatactaaacttggacaa 298181

>dbj|AK220473.1| Mus musculus mRNA for mKIAA4075 protein
          Length = 6337

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  tgatgctgacacatttagtg 145
            ||||||||||||||||||||
Sbjct: 3639 tgatgctgacacatttagtg 3658

>dbj|AK153826.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:C920008E20
            product:chromodomain helicase DNA binding protein 4, full
            insert sequence
          Length = 2779

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  tgatgctgacacatttagtg 145
            ||||||||||||||||||||
Sbjct: 2489 tgatgctgacacatttagtg 2508

>dbj|AK147695.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:M5C1109D08 product:chromodomain helicase DNA
            binding protein 4, full insert sequence
          Length = 6660

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  tgatgctgacacatttagtg 145
            ||||||||||||||||||||
Sbjct: 3875 tgatgctgacacatttagtg 3894

>gb|BC006035.1| Mus musculus chromodomain helicase DNA binding protein 4, mRNA
           (cDNA clone IMAGE:3492938), partial cds
          Length = 3010

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 126 tgatgctgacacatttagtg 145
           ||||||||||||||||||||
Sbjct: 296 tgatgctgacacatttagtg 315

>dbj|AK039580.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length
           enriched library, clone:A330065K20 product:Warning:
           possibly chimeric clone, full insert sequence
          Length = 2740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 126 tgatgctgacacatttagtg 145
           ||||||||||||||||||||
Sbjct: 890 tgatgctgacacatttagtg 909

>dbj|AK034549.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430004K15 product:CHROMODOMAIN
            HELICASE-DNA-BINDING PROTEIN 4 (CHD-4) (MI-2 AUTOANTIGEN
            218 KDA PROTEIN) (MI2-BETA) homolog [Homo sapiens], full
            insert sequence
          Length = 3137

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  tgatgctgacacatttagtg 145
            ||||||||||||||||||||
Sbjct: 2812 tgatgctgacacatttagtg 2831

>gb|BC059082.1| Mus musculus chromodomain helicase DNA binding protein 4, mRNA (cDNA
            clone IMAGE:6827288), containing frame-shift errors
          Length = 4226

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  tgatgctgacacatttagtg 145
            ||||||||||||||||||||
Sbjct: 1511 tgatgctgacacatttagtg 1530

>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 285     attagagatactaaacttggacaagaaa 312
               |||||||||||||||| || ||||||||
Sbjct: 2160489 attagagatactaaacatgaacaagaaa 2160462

>emb|BX682544.5| Zebrafish DNA sequence from clone CH211-189G6 in linkage group 20,
              complete sequence
          Length = 163093

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    acaactgacataacattaga 290
              ||||||||||||||||||||
Sbjct: 157179 acaactgacataacattaga 157198

>gb|AC134529.6| Mus musculus BAC clone RP24-503A2 from chromosome 6, complete sequence
          Length = 166392

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    tgatgctgacacatttagtg 145
              ||||||||||||||||||||
Sbjct: 158036 tgatgctgacacatttagtg 158055

>gb|AC126939.5| Mus musculus BAC clone RP23-62M8 from 13, complete sequence
          Length = 236514

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   tgtggattcatttcaaggct 410
             ||||||||||||||||||||
Sbjct: 95713 tgtggattcatttcaaggct 95732

>emb|AL513503.2|HS297A17 Homo sapiens chromosome 9 BAC RP11-297A17, complete sequence
          Length = 160758

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 393   tggattcatttcaaggctga 412
             ||||||||||||||||||||
Sbjct: 24585 tggattcatttcaaggctga 24604


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,278,136
Number of Sequences: 3902068
Number of extensions: 3278136
Number of successful extensions: 62586
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62481
Number of HSP's gapped (non-prelim): 105
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)