ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl38h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474309.1| Oryza sativa (japonica cultivar-group), predic... 121 2e-24
2emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 121 2e-24
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
4dbj|AK099725.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
5emb|AL732355.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 121 2e-24
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
7dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
8dbj|AK065783.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
9gb|AC164640.4| Mus musculus BAC clone RP23-228M12 from chromosom... 40 6.4
10emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.4
11gb|U86521.1|NHU86521 Nectria haematococca NhRAD6 (NhRAD6) and ki... 40 6.4
12gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 6.4
13gb|AE005079.1| Halobacterium sp. NRC-1 section 110 of 170 of the... 40 6.4
14emb|CT025614.7| Mouse DNA sequence from clone RP23-418B18 on chr... 40 6.4 
>ref|XM_474309.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2880

 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Plus

                                                                       
Query: 305 ccacaagaatccaaacccttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaa 364
           ||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 10  ccacaagaatccaattccttgtgcttgaagcgcaagcttgttgatgactgcctgtcaaaa 69

                            
Query: 365 gagtgcaagtctcgtcg 381
           |||||||||||||||||
Sbjct: 70  gagtgcaagtctcgtcg 86
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>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17,
             complete sequence
          Length = 159894

 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                         
Query: 305   ccacaagaatccaaacccttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaa 364
             ||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 77086 ccacaagaatccaattccttgtgcttgaagcgcaagcttgttgatgactgcctgtcaaaa 77027

                              
Query: 365   gagtgcaagtctcgtcg 381
             |||||||||||||||||
Sbjct: 77026 gagtgcaagtctcgtcg 77010
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                            
Query: 305      ccacaagaatccaaacccttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaa 364
                ||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 34352683 ccacaagaatccaattccttgtgcttgaagcgcaagcttgttgatgactgcctgtcaaaa 34352624

                                 
Query: 365      gagtgcaagtctcgtcg 381
                |||||||||||||||||
Sbjct: 34352623 gagtgcaagtctcgtcg 34352607
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>dbj|AK099725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B18, full
           insert sequence
          Length = 3560

 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Plus

                                                                       
Query: 305 ccacaagaatccaaacccttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaa 364
           ||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 296 ccacaagaatccaattccttgtgcttgaagcgcaagcttgttgatgactgcctgtcaaaa 355

                            
Query: 365 gagtgcaagtctcgtcg 381
           |||||||||||||||||
Sbjct: 356 gagtgcaagtctcgtcg 372
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>emb|AL732355.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0322F07, complete
             sequence
          Length = 100419

 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                         
Query: 305   ccacaagaatccaaacccttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaa 364
             ||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 37221 ccacaagaatccaattccttgtgcttgaagcgcaagcttgttgatgactgcctgtcaaaa 37162

                              
Query: 365   gagtgcaagtctcgtcg 381
             |||||||||||||||||
Sbjct: 37161 gagtgcaagtctcgtcg 37145
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                           
Query: 323     ttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaaga 366
               |||||| |||||||||||||||  ||||| |||||||| |||||
Sbjct: 7710043 ttgtgcctgaagcgcaagcttgttgatgattgcctgtcgaaaga 7710086
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>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0091G06
          Length = 161851

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 323   ttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaaga 366
             |||||| |||||||||||||||  ||||| |||||||| |||||
Sbjct: 22541 ttgtgcctgaagcgcaagcttgttgatgattgcctgtcgaaaga 22584
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>dbj|AK065783.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038L18, full
           insert sequence
          Length = 2830

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 323 ttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaaga 366
           |||||| |||||||||||||||  ||||| |||||||| |||||
Sbjct: 171 ttgtgcctgaagcgcaagcttgttgatgattgcctgtcgaaaga 214
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>gb|AC164640.4| Mus musculus BAC clone RP23-228M12 from chromosome 7, complete sequence
          Length = 232468

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   gctggcgtggcctgaaggcc 160
             ||||||||||||||||||||
Sbjct: 95160 gctggcgtggcctgaaggcc 95141
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 324     tgtgcttgaagcgcaagctt 343
               ||||||||||||||||||||
Sbjct: 1957083 tgtgcttgaagcgcaagctt 1957064
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>gb|U86521.1|NHU86521 Nectria haematococca NhRAD6 (NhRAD6) and kinesin (NhKIN1) genes,
            complete cds
          Length = 6050

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   ctttgccagcgccggcagca 48
            ||||||||||||||||||||
Sbjct: 5252 ctttgccagcgccggcagca 5271
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 49     cggaaccatcagcgcggcggccac 72
              |||||||||||||||| |||||||
Sbjct: 775806 cggaaccatcagcgcgacggccac 775783
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>gb|AE005079.1| Halobacterium sp. NRC-1 section 110 of 170 of the complete genome
          Length = 12797

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    gccagcgccggcagcacgga 52
             ||||||||||||||||||||
Sbjct: 10871 gccagcgccggcagcacgga 10890
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>emb|CT025614.7| Mouse DNA sequence from clone RP23-418B18 on chromosome 13, complete
              sequence
          Length = 183907

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 224    acctgtaaattgtgtaccatatta 247
              |||||||||||||||||| |||||
Sbjct: 111203 acctgtaaattgtgtaccttatta 111226


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,627,357
Number of Sequences: 3902068
Number of extensions: 2627357
Number of successful extensions: 48049
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47944
Number of HSP's gapped (non-prelim): 105
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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