Clone Information

BLAST Search Result

Clone Name	bastl38h08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK068454.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	343	3e-91
2	ref\|NM_187618.1\| Oryza sativa (japonica cultivar-group), predic...	262	9e-67
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	137	4e-29
4	gb\|AC104473.2\| Oryza sativa (japonica cultivar-group) chromosome...	137	4e-29
5	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	137	4e-29
6	gb\|AC146746.15\| Medicago truncatula clone mth2-108p9, complete s...	52	0.002
7	emb\|AJ327199.1\|HSA327199 Homo sapiens genomic sequence surroundi...	44	0.39
8	gb\|AC145897.3\| Pan troglodytes BAC clone RP43-8K4 from 7, comple...	42	1.5
9	emb\|CR940310.6\| M.truncatula DNA sequence from clone MTH2-5D8 on...	42	1.5
10	emb\|CR769775.11\| Human DNA sequence from clone RP11-449H15 on ch...	42	1.5
11	emb\|AL935212.11\| Human DNA sequence from clone RP11-160N1 on chr...	42	1.5
12	emb\|BX005037.5\| Human DNA sequence from clone RP11-34H11 on chro...	42	1.5
13	emb\|AL627230.15\| Human DNA sequence from clone RP11-12A20 on chr...	42	1.5
14	emb\|AL591926.8\| Human DNA sequence from clone RP11-157L3 on chro...	42	1.5
15	emb\|AL391987.15\| Human DNA sequence from clone RP11-374M1 on chr...	42	1.5
16	emb\|AL390198.17\| Human DNA sequence from clone RP13-401N8 on chr...	42	1.5
17	emb\|AL162731.33\| Human DNA sequence from clone RP11-292F9 on chr...	42	1.5
18	emb\|AL078587.18\|HSDJ760C5 Human DNA sequence from clone RP4-760C...	42	1.5
19	gb\|AC090894.10\| Homo sapiens chromosome 17, clone RP11-744K17, c...	42	1.5
20	gb\|AC129805.7\| Homo sapiens 12 BAC RP11-125N22 (Roswell Park Can...	42	1.5
21	gb\|AC020928.7\| Homo sapiens chromosome 19 clone CTD-2162K18, com...	42	1.5
22	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
23	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	42	1.5
24	dbj\|AP003075.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
25	gb\|AC087575.11\| Homo sapiens chromosome 17, clone RP11-305L6, co...	42	1.5
26	emb\|AL627306.15\| Human DNA sequence from clone RP11-81A9 on chro...	42	1.5
27	gb\|AC166159.2\| Mus musculus BAC clone RP24-129B16 from chromosom...	40	6.1
28	gb\|AY234384.1\|AY234384S1 Rubrivivax gelatinosus strain S1 5' reg...	40	6.1
29	ref\|XM_598831.2\| PREDICTED: Bos taurus similar to PR-domain zinc...	40	6.1
30	ref\|XM_865806.1\| PREDICTED: Bos taurus similar to PR-domain zinc...	40	6.1
31	ref\|XM_867855.1\| PREDICTED: Bos taurus similar to PR-domain zinc...	40	6.1
32	gb\|AC131106.4\| Mus musculus chromosome 15 clone RP23-301M20, com...	40	6.1
33	gb\|AC104789.4\| Homo sapiens BAC clone RP11-138B1 from 7, complet...	40	6.1
34	gb\|AF007402.1\|AH006794S09 Mus musculus lysosomal acid lipase gen...	40	6.1
35	emb\|AL663019.2\|OSJN00221 Oryza sativa genomic DNA, chromosome 4,...	40	6.1
36	gb\|AC090651.3\| Homo sapiens chromosome 15 clone RP11-344A16 map ...	40	6.1
37	gb\|AC025916.5\| Homo sapiens chromosome 15 clone CTD-2323M6 map 1...	40	6.1
38	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
39	gb\|AF031110.1\|AF031110 Mus musculus clone K127 candidate target ...	40	6.1
40	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	6.1
41	gb\|AE004775.1\| Pseudomonas aeruginosa PAO1, section 336 of 529 o...	40	6.1
42	ref\|XM_573525.1\| PREDICTED: Rattus norvegicus similar to 9630058...	40	6.1
43	gb\|AY880027.1\| Pseudomonas aeruginosa alginate biosynthesis prot...	40	6.1
44	gb\|AC102249.16\| Mus musculus chromosome 19, clone RP24-160D21, c...	40	6.1
45	gb\|AC174770.1\| Gasterosteus aculeatus clone VMRC28-84C03, comple...	40	6.1
46	emb\|AL662976.3\|OSJN00177 Oryza sativa genomic DNA, chromosome 4,...	40	6.1
47	gb\|AC166064.4\| Mus musculus BAC clone RP23-52K8 from chromosome ...	40	6.1
48	emb\|AL591946.14\| Mouse DNA sequence from clone RP23-290M7 on chr...	40	6.1
49	gb\|M30880.1\|MUSTCBYAJ Mouse T-cell receptor beta-chain V-region ...	40	6.1
50	gb\|M37181.1\|PSEALG76 P.aeruginosa alg76 gene, complete cds	40	6.1
51	dbj\|AB001942.1\| Mus musculus mRNA for TCR beta chain, partial cds	40	6.1
52	emb\|AL669955.6\| Mouse DNA sequence from clone RP23-188F1 on chro...	40	6.1

>dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full
           insert sequence
          Length = 3214

 Score =  343 bits (173), Expect = 3e-91
 Identities = 281/317 (88%)
 Strand = Plus / Plus

                                                                       
Query: 136 cgtcgcatgcctcgctccctcgccggcgacctcaccgacccggagatggcgcagccctac 195
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 136 cgtcgcatgcctcgctccctcgccggcgacctcaccgatccggagatggcgcagccgtac 195

                                                                       
Query: 196 atgaagaaggacgacgacgactccgacatcgagtactcaccatttttcgggattgagaag 255
           ||||||||||| |||||||||   ||| | |||||||| |||||||  ||||||||||||
Sbjct: 196 atgaagaaggatgacgacgacgaggacgttgagtactcgccattttatgggattgagaag 255

                                                                       
Query: 256 ggggctgttctgcaggaggcacgggctttccatgatccccagcttgatgccagaagatgc 315
           || || ||||||||||||||| |||||||||||||||| |||||||||||||| |  |||
Sbjct: 256 ggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgccaggaagtgc 315

                                                                       
Query: 316 tcgcaagttatcaccaagttattatatttaattaaccaaggagagtcctttacaaaggtt 375
           |||||||| ||||| ||| |||| |||||| | |||||||| ||| | || |||||||||
Sbjct: 316 tcgcaagtcatcactaagctattgtatttactcaaccaaggggagacattcacaaaggtt 375

                                                                       
Query: 376 gaggccacagaagtcttctttgcagttactaagttattccagtccaatgatgctggtctc 435
           |||||||||||||| ||||||||||| || ||| | ||||||||||| ||||||||||| 
Sbjct: 376 gaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgctggtctt 435

                            
Query: 436 aggaggctggtgtattt 452
           ||| |||||||||||||
Sbjct: 436 aggcggctggtgtattt 452

to top

>ref|NM_187618.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2481

 Score =  262 bits (132), Expect = 9e-67
 Identities = 237/272 (87%)
 Strand = Plus / Plus

                                                                       
Query: 181 atggcgcagccctacatgaagaaggacgacgacgactccgacatcgagtactcaccattt 240
           ||||||||||| |||||||||||||| |||||||||   ||| | |||||||| ||||||
Sbjct: 1   atggcgcagccgtacatgaagaaggatgacgacgacgaggacgttgagtactcgccattt 60

                                                                       
Query: 241 ttcgggattgagaagggggctgttctgcaggaggcacgggctttccatgatccccagctt 300
           |  |||||||||||||| || ||||||||||||||| |||||||||||||||| ||||||
Sbjct: 61  tatgggattgagaagggagccgttctgcaggaggcaagggctttccatgatccgcagctt 120

                                                                       
Query: 301 gatgccagaagatgctcgcaagttatcaccaagttattatatttaattaaccaaggagag 360
           |||||||| |  ||||||||||| ||||| ||| |||| |||||| | |||||||| |||
Sbjct: 121 gatgccaggaagtgctcgcaagtcatcactaagctattgtatttactcaaccaaggggag 180

                                                                       
Query: 361 tcctttacaaaggttgaggccacagaagtcttctttgcagttactaagttattccagtcc 420
            | || ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||
Sbjct: 181 acattcacaaaggttgaggccacagaagttttctttgcagtaacaaagctgttccagtcc 240

                                           
Query: 421 aatgatgctggtctcaggaggctggtgtattt 452
           || ||||||||||| ||| |||||||||||||
Sbjct: 241 aaggatgctggtcttaggcggctggtgtattt 272

to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  137 bits (69), Expect = 4e-29
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                           
Query: 136     cgtcgcatgcctcgctccctcgccggcgacctcaccgacccggagatggcgcagccctac 195
               |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 6644825 cgtcgcatgcctcgctccctcgccggcgacctcaccgatccggagatggcgcagccgtac 6644884

                                    
Query: 196     atgaagaaggacgacgacgac 216
               ||||||||||| |||||||||
Sbjct: 6644885 atgaagaaggatgacgacgac 6644905



 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Plus

                                                                           
Query: 226     gagtactcaccatttttcgggattgagaagggggctgttctgcaggaggcacgggctttc 285
               |||||||| |||||||  |||||||||||||| || ||||||||||||||| ||||||||
Sbjct: 6646007 gagtactcgccattttatgggattgagaagggagccgttctgcaggaggcaagggctttc 6646066

                                                     
Query: 286     catgatccccagcttgatgccagaagatgctcgcaagt 323
               |||||||| |||||||||||||| |  |||||||||||
Sbjct: 6646067 catgatccgcagcttgatgccaggaagtgctcgcaagt 6646104



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 74/82 (90%)
 Strand = Plus / Plus

                                                                           
Query: 371     aggttgaggccacagaagtcttctttgcagttactaagttattccagtccaatgatgctg 430
               ||||||||||||||||||| ||||||||||| || ||| | ||||||||||| |||||||
Sbjct: 6646358 aggttgaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgctg 6646417

                                     
Query: 431     gtctcaggaggctggtgtattt 452
               |||| ||| |||||||||||||
Sbjct: 6646418 gtcttaggcggctggtgtattt 6646439

to top

>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05,
             complete sequence
          Length = 127946

 Score =  137 bits (69), Expect = 4e-29
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                         
Query: 136   cgtcgcatgcctcgctccctcgccggcgacctcaccgacccggagatggcgcagccctac 195
             |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 30373 cgtcgcatgcctcgctccctcgccggcgacctcaccgatccggagatggcgcagccgtac 30432

                                  
Query: 196   atgaagaaggacgacgacgac 216
             ||||||||||| |||||||||
Sbjct: 30433 atgaagaaggatgacgacgac 30453



 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Plus

                                                                         
Query: 226   gagtactcaccatttttcgggattgagaagggggctgttctgcaggaggcacgggctttc 285
             |||||||| |||||||  |||||||||||||| || ||||||||||||||| ||||||||
Sbjct: 31555 gagtactcgccattttatgggattgagaagggagccgttctgcaggaggcaagggctttc 31614

                                                   
Query: 286   catgatccccagcttgatgccagaagatgctcgcaagt 323
             |||||||| |||||||||||||| |  |||||||||||
Sbjct: 31615 catgatccgcagcttgatgccaggaagtgctcgcaagt 31652



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 74/82 (90%)
 Strand = Plus / Plus

                                                                         
Query: 371   aggttgaggccacagaagtcttctttgcagttactaagttattccagtccaatgatgctg 430
             ||||||||||||||||||| ||||||||||| || ||| | ||||||||||| |||||||
Sbjct: 31906 aggttgaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgctg 31965

                                   
Query: 431   gtctcaggaggctggtgtattt 452
             |||| ||| |||||||||||||
Sbjct: 31966 gtcttaggcggctggtgtattt 31987

to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  137 bits (69), Expect = 4e-29
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                           
Query: 136     cgtcgcatgcctcgctccctcgccggcgacctcaccgacccggagatggcgcagccctac 195
               |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 6644038 cgtcgcatgcctcgctccctcgccggcgacctcaccgatccggagatggcgcagccgtac 6644097

                                    
Query: 196     atgaagaaggacgacgacgac 216
               ||||||||||| |||||||||
Sbjct: 6644098 atgaagaaggatgacgacgac 6644118



 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Plus

                                                                           
Query: 226     gagtactcaccatttttcgggattgagaagggggctgttctgcaggaggcacgggctttc 285
               |||||||| |||||||  |||||||||||||| || ||||||||||||||| ||||||||
Sbjct: 6645220 gagtactcgccattttatgggattgagaagggagccgttctgcaggaggcaagggctttc 6645279

                                                     
Query: 286     catgatccccagcttgatgccagaagatgctcgcaagt 323
               |||||||| |||||||||||||| |  |||||||||||
Sbjct: 6645280 catgatccgcagcttgatgccaggaagtgctcgcaagt 6645317



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 74/82 (90%)
 Strand = Plus / Plus

                                                                           
Query: 371     aggttgaggccacagaagtcttctttgcagttactaagttattccagtccaatgatgctg 430
               ||||||||||||||||||| ||||||||||| || ||| | ||||||||||| |||||||
Sbjct: 6645571 aggttgaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgctg 6645630

                                     
Query: 431     gtctcaggaggctggtgtattt 452
               |||| ||| |||||||||||||
Sbjct: 6645631 gtcttaggcggctggtgtattt 6645652

to top

>gb|AC146746.15| Medicago truncatula clone mth2-108p9, complete sequence
          Length = 95118

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                         
Query: 229   tactcaccatttttcgggattgagaagggggctgttctgcaggaggcacgggctttccat 288
             ||||| || ||||| |||||||| |||||||||||||| || ||||| |||| |||  ||
Sbjct: 24662 tactccccttttttggggattgaaaagggggctgttcttcaagaggcccgggtttttaat 24721

                                       
Query: 289   gatccccagcttgatgccagaagatg 314
             ||||| || || ||||| || |||||
Sbjct: 24722 gatccacaactagatgctaggagatg 24747



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 371   aggttgaggccacagaagtcttctttgcagttactaagttattccagtc 419
             ||||||| ||||||||||| |||||| | ||||| ||| | ||||||||
Sbjct: 25167 aggttgaagccacagaagttttcttttctgttaccaagcttttccagtc 25215

to top

>emb|AJ327199.1|HSA327199 Homo sapiens genomic sequence surrounding NotI site, clone
          NR5-CD7C
          Length = 592

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 3  gaccccaccccaccgtcccacc 24
          ||||||||||||||||||||||
Sbjct: 78 gaccccaccccaccgtcccacc 99

to top

>gb|AC145897.3| Pan troglodytes BAC clone RP43-8K4 from 7, complete sequence
          Length = 153704

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 374   ttgaggccacagaagtcttct 394
             |||||||||||||||||||||
Sbjct: 29610 ttgaggccacagaagtcttct 29590

to top

>emb|CR940310.6| M.truncatula DNA sequence from clone MTH2-5D8 on chromosome 3, complete
              sequence
          Length = 121689

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 379    gccacagaagtcttctttgcagttactaagttattccagtc 419
              ||||||||||| |||||||| || |||||| | ||||||||
Sbjct: 119220 gccacagaagttttctttgctgtcactaagcttttccagtc 119260

to top

>emb|CR769775.11| Human DNA sequence from clone RP11-449H15 on chromosome 9 Contains a
            novel gene, complete sequence
          Length = 169430

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 374  ttgaggccacagaagtcttct 394
            |||||||||||||||||||||
Sbjct: 6982 ttgaggccacagaagtcttct 6962

to top

>emb|AL935212.11| Human DNA sequence from clone RP11-160N1 on chromosome 9 Contains eight
             novel pseudogenes, two novel genes and three CpG islands,
             complete sequence
          Length = 181647

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 374   ttgaggccacagaagtcttct 394
             |||||||||||||||||||||
Sbjct: 56609 ttgaggccacagaagtcttct 56629

to top

>emb|BX005037.5| Human DNA sequence from clone RP11-34H11 on chromosome 9 Contains two CpG
              islands, complete sequence
          Length = 173181

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 374    ttgaggccacagaagtcttct 394
              |||||||||||||||||||||
Sbjct: 165581 ttgaggccacagaagtcttct 165561

to top

>emb|AL627230.15| Human DNA sequence from clone RP11-12A20 on chromosome 9 Contains six
            novel pseudogenes, the FAM27B gene for family with
            sequence similarity 27, member B, a pseudogene similar to
            part of ribosomal protein L10 (RPL10) and four CpG
            islands, complete sequence
          Length = 194246

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 374  ttgaggccacagaagtcttct 394
            |||||||||||||||||||||
Sbjct: 8137 ttgaggccacagaagtcttct 8157

to top

>emb|AL591926.8| Human DNA sequence from clone RP11-157L3 on chromosome 9 Contains
            five novel pseudogenes, a pseudogene similar to part of
            ribosomal protein L10 (RPL10) and two CpG islands,
            complete sequence
          Length = 182366

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 374  ttgaggccacagaagtcttct 394
            |||||||||||||||||||||
Sbjct: 7611 ttgaggccacagaagtcttct 7631

to top

>emb|AL391987.15| Human DNA sequence from clone RP11-374M1 on chromosome 9 Contains the
             FAM27C gene for family with sequence similarity 27, member
             C, three novel genes, five novel pseudogenes and six CpG
             islands, complete sequence
          Length = 202081

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 374   ttgaggccacagaagtcttct 394
             |||||||||||||||||||||
Sbjct: 72620 ttgaggccacagaagtcttct 72640

to top

>emb|AL390198.17| Human DNA sequence from clone RP13-401N8 on chromosome 20 Contains three
              novel genes, a vomeronasal organ phermone receptor family
              pseudogene, a novel zinc-finger pseudogene and nine CpG
              islands, complete sequence
          Length = 167717

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 374    ttgaggccacagaagtcttct 394
              |||||||||||||||||||||
Sbjct: 121896 ttgaggccacagaagtcttct 121876

to top

>emb|AL162731.33| Human DNA sequence from clone RP11-292F9 on chromosome 9 Contains four
             novel genes, three novel pseudogenes and two CpG islands,
             complete sequence
          Length = 188062

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 374   ttgaggccacagaagtcttct 394
             |||||||||||||||||||||
Sbjct: 29025 ttgaggccacagaagtcttct 29045

to top

>emb|AL078587.18|HSDJ760C5 Human DNA sequence from clone RP4-760C5 on chromosome 20 Contains an exon
              for a protein similar to  ABCC7 (ATP-binding cassette,
              sub-family C (CFTR/MRP),member 7), two novel genes and two
              CpG islands, complete sequence
          Length = 124489

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 374    ttgaggccacagaagtcttct 394
              |||||||||||||||||||||
Sbjct: 123679 ttgaggccacagaagtcttct 123699

to top

>gb|AC090894.10| Homo sapiens chromosome 17, clone RP11-744K17, complete sequence
          Length = 150680

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 374    ttgaggccacagaagtcttct 394
              |||||||||||||||||||||
Sbjct: 140663 ttgaggccacagaagtcttct 140643

to top

>gb|AC129805.7| Homo sapiens 12 BAC RP11-125N22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165378

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 374    ttgaggccacagaagtcttct 394
              |||||||||||||||||||||
Sbjct: 106268 ttgaggccacagaagtcttct 106288

to top

>gb|AC020928.7| Homo sapiens chromosome 19 clone CTD-2162K18, complete sequence
          Length = 109666

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 374   ttgaggccacagaagtcttct 394
             |||||||||||||||||||||
Sbjct: 29053 ttgaggccacagaagtcttct 29033

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 27       tccaccgccgcacggccgagc 47
                |||||||||||||||||||||
Sbjct: 21441574 tccaccgccgcacggccgagc 21441594

to top

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 162     cgacctcaccgacccggagatggcg 186
               |||||||||||| ||||||||||||
Sbjct: 2798426 cgacctcaccgatccggagatggcg 2798450



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 155    tcgccggcgacctcaccgacc 175
              |||||||||||||||||||||
Sbjct: 167698 tcgccggcgacctcaccgacc 167718

to top

>dbj|AP003075.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0468H06
          Length = 155031

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    tccaccgccgcacggccgagc 47
             |||||||||||||||||||||
Sbjct: 82960 tccaccgccgcacggccgagc 82980

to top

>gb|AC087575.11| Homo sapiens chromosome 17, clone RP11-305L6, complete sequence
          Length = 198756

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 374   ttgaggccacagaagtcttct 394
             |||||||||||||||||||||
Sbjct: 47072 ttgaggccacagaagtcttct 47052

to top

>emb|AL627306.15| Human DNA sequence from clone RP11-81A9 on chromosome 9, complete
             sequence
          Length = 51133

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 374   ttgaggccacagaagtcttct 394
             |||||||||||||||||||||
Sbjct: 44152 ttgaggccacagaagtcttct 44172

to top

>gb|AC166159.2| Mus musculus BAC clone RP24-129B16 from chromosome 15, complete sequence
          Length = 216481

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    gtcctttacaaaggttgagg 379
              ||||||||||||||||||||
Sbjct: 158484 gtcctttacaaaggttgagg 158503

to top

>gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' region photosynthesis gene
            cluster, partial sequence
          Length = 24637

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 159  cggcgacctcaccgacccgg 178
            ||||||||||||||||||||
Sbjct: 1930 cggcgacctcaccgacccgg 1949

to top

>ref|XM_598831.2| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 7
           (LOC520584), partial mRNA
          Length = 699

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 357 agagtcctttacaaaggttg 376
           ||||||||||||||||||||
Sbjct: 195 agagtcctttacaaaggttg 176

to top

>ref|XM_865806.1| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 7
           (LOC614338), partial mRNA
          Length = 928

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 357 agagtcctttacaaaggttg 376
           ||||||||||||||||||||
Sbjct: 228 agagtcctttacaaaggttg 209

to top

>ref|XM_867855.1| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 7
           (LOC615918), partial mRNA
          Length = 1050

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 357 agagtcctttacaaaggttg 376
           ||||||||||||||||||||
Sbjct: 183 agagtcctttacaaaggttg 164

to top

>gb|AC131106.4| Mus musculus chromosome 15 clone RP23-301M20, complete sequence
          Length = 218875

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  gtcctttacaaaggttgagg 379
            ||||||||||||||||||||
Sbjct: 4660 gtcctttacaaaggttgagg 4679

to top

>gb|AC104789.4| Homo sapiens BAC clone RP11-138B1 from 7, complete sequence
          Length = 142048

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 383   cagaagtcttctttgcagttacta 406
             |||||||||||||| |||||||||
Sbjct: 20248 cagaagtcttctttccagttacta 20271

to top

>gb|AF007402.1|AH006794S09 Mus musculus lysosomal acid lipase gene, intron 6, 5' end
          Length = 387

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 106 cccacccgccaccccgctccacca 129
           ||||||| ||||||||||||||||
Sbjct: 136 cccaccccccaccccgctccacca 159

to top

>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10,
              complete sequence
          Length = 141545

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    tcgccggcgacctcaccgac 174
              ||||||||||||||||||||
Sbjct: 137246 tcgccggcgacctcaccgac 137265

to top

>gb|AC090651.3| Homo sapiens chromosome 15 clone RP11-344A16 map 15q21.3, complete
              sequence
          Length = 208230

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 254    agggggctgttctgcaggag 273
              ||||||||||||||||||||
Sbjct: 131061 agggggctgttctgcaggag 131042

to top

>gb|AC025916.5| Homo sapiens chromosome 15 clone CTD-2323M6 map 15q21.3, complete
             sequence
          Length = 109403

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   agggggctgttctgcaggag 273
             ||||||||||||||||||||
Sbjct: 27285 agggggctgttctgcaggag 27266

to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 155      tcgccggcgacctcaccgac 174
                ||||||||||||||||||||
Sbjct: 26360669 tcgccggcgacctcaccgac 26360688

to top

>gb|AF031110.1|AF031110 Mus musculus clone K127 candidate target gene for EVI-1 zinc finger
           protein
          Length = 331

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 333 gttattatatttaattaacc 352
           ||||||||||||||||||||
Sbjct: 69  gttattatatttaattaacc 88

to top

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 159     cggcgacctcaccgacccggagat 182
               |||| |||||||||||||||||||
Sbjct: 7262592 cggccacctcaccgacccggagat 7262615

to top

>gb|AE004775.1| Pseudomonas aeruginosa PAO1, section 336 of 529 of the complete
            genome
          Length = 11407

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  cgacgacgactccgacatcg 226
            ||||||||||||||||||||
Sbjct: 3890 cgacgacgactccgacatcg 3909

to top

>ref|XM_573525.1| PREDICTED: Rattus norvegicus similar to 9630058J23Rik protein
           (LOC498297), mRNA
          Length = 1325

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 203 aggacgacgacgactccgac 222
           ||||||||||||||||||||
Sbjct: 881 aggacgacgacgactccgac 900

to top

>gb|AY880027.1| Pseudomonas aeruginosa alginate biosynthesis protein AlgE (algE)
            gene, partial cds
          Length = 1172

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  cgacgacgactccgacatcg 226
            ||||||||||||||||||||
Sbjct: 1050 cgacgacgactccgacatcg 1069

to top

>gb|AC102249.16| Mus musculus chromosome 19, clone RP24-160D21, complete sequence
          Length = 212190

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 106    cccacccgccaccccgctccacca 129
              ||||||| ||||||||||||||||
Sbjct: 136094 cccaccccccaccccgctccacca 136071

to top

>gb|AC174770.1| Gasterosteus aculeatus clone VMRC28-84C03, complete sequence
          Length = 124367

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    tcgctccctcgccggcgacc 166
              ||||||||||||||||||||
Sbjct: 108070 tcgctccctcgccggcgacc 108051

to top

>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
            complete sequence
          Length = 171551

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 155  tcgccggcgacctcaccgac 174
            ||||||||||||||||||||
Sbjct: 1302 tcgccggcgacctcaccgac 1321

to top

>gb|AC166064.4| Mus musculus BAC clone RP23-52K8 from chromosome 17, complete sequence
          Length = 245671

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   tgaggccacagaagtcttct 394
             ||||||||||||||||||||
Sbjct: 10654 tgaggccacagaagtcttct 10635

to top

>emb|AL591946.14| Mouse DNA sequence from clone RP23-290M7 on chromosome 15, complete
              sequence
          Length = 188892

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 263    ttctgcaggaggcacgggct 282
              ||||||||||||||||||||
Sbjct: 165986 ttctgcaggaggcacgggct 165967

to top

>gb|M30880.1|MUSTCBYAJ Mouse T-cell receptor beta-chain V-region (V12-D1.1-J1.1-C0-C2)
           mRNA, partial cds
          Length = 281

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 378 ggccacagaagtcttctttg 397
           ||||||||||||||||||||
Sbjct: 155 ggccacagaagtcttctttg 174

to top

>gb|M37181.1|PSEALG76 P.aeruginosa alg76 gene, complete cds
          Length = 2328

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  cgacgacgactccgacatcg 226
            ||||||||||||||||||||
Sbjct: 1579 cgacgacgactccgacatcg 1598

to top

>dbj|AB001942.1| Mus musculus mRNA for TCR beta chain, partial cds
          Length = 42

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 378 ggccacagaagtcttctttg 397
           ||||||||||||||||||||
Sbjct: 21  ggccacagaagtcttctttg 40

to top

>emb|AL669955.6| Mouse DNA sequence from clone RP23-188F1 on chromosome 4, complete
             sequence
          Length = 114881

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 393   ctttgcagttactaagttattcca 416
             ||||| ||||||||||||||||||
Sbjct: 35896 ctttgtagttactaagttattcca 35873


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,104,138
Number of Sequences: 3902068
Number of extensions: 4104138
Number of successful extensions: 81212
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80791
Number of HSP's gapped (non-prelim): 421
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result