ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl38h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK067954.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 1e-50
2dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 123 6e-25
3gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003... 123 6e-25
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 123 6e-25
5gb|AC117233.3| Mus musculus BAC clone RP23-408M8 from 6, complet... 52 0.002
6gb|AC149089.4| Mus musculus BAC clone RP23-94H23 from 6, complet... 52 0.002
7gb|BT013570.1| Lycopersicon esculentum clone 132308R, mRNA sequence 50 0.007
8gb|AC171265.5| Medicago truncatula clone mth2-2j17, complete seq... 46 0.11
9gb|AC163033.4| Mus musculus BAC clone RP23-432F6 from chromosome... 44 0.42
10emb|AL441884.5| Human DNA sequence from clone RP11-19A22 on chro... 44 0.42
11ref|XM_550452.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
12gb|AC010993.13| Drosophila melanogaster clone BACR27O05, complet... 42 1.7
13gb|AC023697.5| Drosophila melanogaster X BAC RP98-13N3 (Roswell ... 42 1.7
14gb|AF149806.1| Oryza sativa hypothetical protein, fertilin alpha... 42 1.7
15gb|AC023154.5| Homo sapiens chromosome 4 clone RP11-752D24, comp... 42 1.7
16dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
17dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
18dbj|AK119640.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
19dbj|AK111672.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
20gb|AE003492.3| Drosophila melanogaster chromosome X, section 44 ... 42 1.7
21gb|AC159703.1| Trypanosoma brucei chromosome 8 clone RPCI93-30K1... 40 6.6
22gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 6.6
23ref|XM_421726.1| PREDICTED: Gallus gallus similar to Semaphorin ... 40 6.6
24gb|AC120843.11| Mus musculus chromosome 12, clone RP23-71C5, com... 40 6.6
25gb|AC116586.6| Mus musculus BAC clone RP23-402K15 from chromosom... 40 6.6
26gb|AC093709.2| Pan troglodytes clone RP43-180A19, complete sequence 40 6.6
27gb|AC093714.2| Homo sapiens BAC clone RP11-458K10 from 7, comple... 40 6.6
28gb|AC011477.5| Homo sapiens chromosome 19 clone CTC-559E9, compl... 40 6.6
29gb|AC020948.8| Homo sapiens chromosome 19 clone LLNLR-227D2, com... 40 6.6
30gb|AC159229.2| Mus musculus BAC clone RP24-351I2 from chromosome... 40 6.6
31gb|AC147785.3| Pan troglodytes BAC clone RP43-147G4 from chromos... 40 6.6
32gb|AC009953.4| Homo sapiens BAC clone RP11-193F16 from 2, comple... 40 6.6
33gb|AC010521.4|AC010521 Homo sapiens chromosome 19 clone LLNLR-26... 40 6.6
34emb|AL158058.5|CNS01RGJ Human chromosome 14 DNA sequence BAC R-2... 40 6.6
35gb|AC118196.12| Mus musculus chromosome 1, clone RP23-354J2, com... 40 6.6
36gb|AC154649.3| Mus musculus BAC clone RP23-156O5 from chromosome... 40 6.6
37gb|AC150744.2| Mus musculus BAC clone RP24-98O8 from 7, complete... 40 6.6
38emb|AL807756.9| Mouse DNA sequence from clone RP23-36M9 on chrom... 40 6.6
39emb|AL671090.9| Mouse DNA sequence from clone RP23-154A10 on chr... 40 6.6 
>dbj|AK067954.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128J21, full
            insert sequence
          Length = 2434

 Score =  208 bits (105), Expect = 1e-50
 Identities = 167/185 (90%), Gaps = 2/185 (1%)
 Strand = Plus / Plus

                                                                        
Query: 307  agttgaatacacagaatgatgttatgacagagtgtgggaactcggaaagcttaatagatg 366
            |||||||||||||||||||||| ||||| || | |||||| || ||  ||||||||||||
Sbjct: 1463 agttgaatacacagaatgatgtgatgacggactctgggaattcagagggcttaatagatg 1522

                                                                        
Query: 367  ttaatgtttgtgatatatgtggagatgtgggtagggaatatcttctggctacatgcactc 426
            |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| 
Sbjct: 1523 ttaatgtttgtgatatatgtggagatgttggaagggaatatcttctggctacatgcacta 1582

                                                                        
Query: 427  gatgccttgagggggcggagcatacttattg-atgcgagtgaagttgga-caagttccag 484
            | |||||||| ||||| |||||||||||||| |||||||||||||| ||  |||||||||
Sbjct: 1583 ggtgccttgaaggggcagagcatacttattgcatgcgagtgaagttagagaaagttccag 1642

                 
Query: 485  atggt 489
            |||||
Sbjct: 1643 atggt 1647
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  123 bits (62), Expect = 6e-25
 Identities = 80/86 (93%)
 Strand = Plus / Minus

                                                                            
Query: 366      gttaatgtttgtgatatatgtggagatgtgggtagggaatatcttctggctacatgcact 425
                ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 22183738 gttaatgtttgtgatatatgtggagatgttggaagggaatatcttctggctacatgcact 22183679

                                          
Query: 426      cgatgccttgagggggcggagcatac 451
                 | |||||||| ||||| ||||||||
Sbjct: 22183678 aggtgccttgaaggggcagagcatac 22183653



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                            
Query: 307      agttgaatacacagaatgatgttatgacagagtgtgggaactcggaaagcttaatagatg 366
                |||||||||||||||||||||| ||||| || | |||||| || ||  ||||||||||||
Sbjct: 22184522 agttgaatacacagaatgatgtgatgacggactctgggaattcagagggcttaatagatg 22184463

                 
Query: 367      t 367
                |
Sbjct: 22184462 t 22184462
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>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence,
           complete sequence
          Length = 172427

 Score =  123 bits (62), Expect = 6e-25
 Identities = 80/86 (93%)
 Strand = Plus / Minus

                                                                       
Query: 366 gttaatgtttgtgatatatgtggagatgtgggtagggaatatcttctggctacatgcact 425
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 981 gttaatgtttgtgatatatgtggagatgttggaagggaatatcttctggctacatgcact 922

                                     
Query: 426 cgatgccttgagggggcggagcatac 451
            | |||||||| ||||| ||||||||
Sbjct: 921 aggtgccttgaaggggcagagcatac 896



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                        
Query: 307  agttgaatacacagaatgatgttatgacagagtgtgggaactcggaaagcttaatagatg 366
            |||||||||||||||||||||| ||||| || | |||||| || ||  ||||||||||||
Sbjct: 1765 agttgaatacacagaatgatgtgatgacggactctgggaattcagagggcttaatagatg 1706

             
Query: 367  t 367
            |
Sbjct: 1705 t 1705
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  123 bits (62), Expect = 6e-25
 Identities = 80/86 (93%)
 Strand = Plus / Minus

                                                                            
Query: 366      gttaatgtttgtgatatatgtggagatgtgggtagggaatatcttctggctacatgcact 425
                ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 22195806 gttaatgtttgtgatatatgtggagatgttggaagggaatatcttctggctacatgcact 22195747

                                          
Query: 426      cgatgccttgagggggcggagcatac 451
                 | |||||||| ||||| ||||||||
Sbjct: 22195746 aggtgccttgaaggggcagagcatac 22195721



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                            
Query: 307      agttgaatacacagaatgatgttatgacagagtgtgggaactcggaaagcttaatagatg 366
                |||||||||||||||||||||| ||||| || | |||||| || ||  ||||||||||||
Sbjct: 22196590 agttgaatacacagaatgatgtgatgacggactctgggaattcagagggcttaatagatg 22196531

                 
Query: 367      t 367
                |
Sbjct: 22196530 t 22196530
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>gb|AC117233.3| Mus musculus BAC clone RP23-408M8 from 6, complete sequence
          Length = 187083

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                        
Query: 190    atgtcagtcaagaacacactgacatt 215
              ||||||||||||||||||||||||||
Sbjct: 121130 atgtcagtcaagaacacactgacatt 121155
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>gb|AC149089.4| Mus musculus BAC clone RP23-94H23 from 6, complete sequence
          Length = 189070

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 190   atgtcagtcaagaacacactgacatt 215
             ||||||||||||||||||||||||||
Sbjct: 64058 atgtcagtcaagaacacactgacatt 64083
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>gb|BT013570.1| Lycopersicon esculentum clone 132308R, mRNA sequence
          Length = 5039

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 361  tagatgttaatgtttgtgatatatgtggagatg 393
            ||||||| || ||||||||||||||||||||||
Sbjct: 1096 tagatgtgaaagtttgtgatatatgtggagatg 1128
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>gb|AC171265.5| Medicago truncatula clone mth2-2j17, complete sequence
          Length = 117361

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 21   aaagttccaaataatgacataga 43
            |||||||||||||||||||||||
Sbjct: 7175 aaagttccaaataatgacataga 7153
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>gb|AC163033.4| Mus musculus BAC clone RP23-432F6 from chromosome 12, complete sequence
          Length = 201510

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 123    aacaaaaataaaatcaaggctg 144
              ||||||||||||||||||||||
Sbjct: 118784 aacaaaaataaaatcaaggctg 118763
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>emb|AL441884.5| Human DNA sequence from clone RP11-19A22 on chromosome 9 Contains part
             of a variant of the PTPRD gene for protein tyrosine
             phosphatase, receptor type, D (HPTP, PTPD, HPTPD),
             complete sequence
          Length = 137783

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 325   atgttatgacagagtgtgggaa 346
             ||||||||||||||||||||||
Sbjct: 89491 atgttatgacagagtgtgggaa 89512
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>ref|XM_550452.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1417

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 466 gaagttggacaagttccagat 486
           |||||||||||||||||||||
Sbjct: 707 gaagttggacaagttccagat 687
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>gb|AC010993.13| Drosophila melanogaster clone BACR27O05, complete sequence
          Length = 193526

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 121   gtaacaaaaataaaatcaagg 141
             |||||||||||||||||||||
Sbjct: 23201 gtaacaaaaataaaatcaagg 23221
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>gb|AC023697.5| Drosophila melanogaster X BAC RP98-13N3 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 171751

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 121    gtaacaaaaataaaatcaagg 141
              |||||||||||||||||||||
Sbjct: 132187 gtaacaaaaataaaatcaagg 132207
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>gb|AF149806.1| Oryza sativa hypothetical protein, fertilin alpha subunit, membrane
             protein homolog, and Myb-related protein genes, complete
             cds; and unknown gene
          Length = 33178

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 466   gaagttggacaagttccagat 486
             |||||||||||||||||||||
Sbjct: 25984 gaagttggacaagttccagat 26004
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>gb|AC023154.5| Homo sapiens chromosome 4 clone RP11-752D24, complete sequence
          Length = 187004

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     caacaaccttatgagaaagtt 26
             |||||||||||||||||||||
Sbjct: 84898 caacaaccttatgagaaagtt 84918
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 466    gaagttggacaagttccagat 486
              |||||||||||||||||||||
Sbjct: 400453 gaagttggacaagttccagat 400473
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>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0644B06
          Length = 194509

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 466    gaagttggacaagttccagat 486
              |||||||||||||||||||||
Sbjct: 110406 gaagttggacaagttccagat 110426
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>dbj|AK119640.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F07, full
           insert sequence
          Length = 1482

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 466 gaagttggacaagttccagat 486
           |||||||||||||||||||||
Sbjct: 706 gaagttggacaagttccagat 686
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>dbj|AK111672.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156D15, full
           insert sequence
          Length = 1418

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 466 gaagttggacaagttccagat 486
           |||||||||||||||||||||
Sbjct: 707 gaagttggacaagttccagat 687
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>gb|AE003492.3| Drosophila melanogaster chromosome X, section 44 of 74 of the complete
             sequence
          Length = 296756

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 121   gtaacaaaaataaaatcaagg 141
             |||||||||||||||||||||
Sbjct: 24823 gtaacaaaaataaaatcaagg 24843
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>gb|AC159703.1| Trypanosoma brucei chromosome 8 clone RPCI93-30K1, complete sequence
          Length = 148802

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    atcatttaccgggaggaaaa 62
             ||||||||||||||||||||
Sbjct: 75028 atcatttaccgggaggaaaa 75009
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 43      atcatttaccgggaggaaaa 62
               ||||||||||||||||||||
Sbjct: 1924846 atcatttaccgggaggaaaa 1924827
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>ref|XM_421726.1| PREDICTED: Gallus gallus similar to Semaphorin 4G precursor
            (LOC423858), mRNA
          Length = 5645

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 188  gaatgtcagtcaagaacacactga 211
            |||||||||| |||||||||||||
Sbjct: 1316 gaatgtcagtgaagaacacactga 1339
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>gb|AC120843.11| Mus musculus chromosome 12, clone RP23-71C5, complete sequence
          Length = 220627

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 354   agcttaatagatgttaatgtttgt 377
             |||||||| |||||||||||||||
Sbjct: 54225 agcttaattgatgttaatgtttgt 54202
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>gb|AC116586.6| Mus musculus BAC clone RP23-402K15 from chromosome 7, complete sequence
          Length = 191174

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 123    aacaaaaataaaatcaaggctgga 146
              |||||||||||||| |||||||||
Sbjct: 106234 aacaaaaataaaataaaggctgga 106257
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>gb|AC093709.2| Pan troglodytes clone RP43-180A19, complete sequence
          Length = 195646

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   aaaaataaaatcaaggctgg 145
             ||||||||||||||||||||
Sbjct: 26465 aaaaataaaatcaaggctgg 26484
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>gb|AC093714.2| Homo sapiens BAC clone RP11-458K10 from 7, complete sequence
          Length = 142751

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   gttgaatacacagaatgatg 327
             ||||||||||||||||||||
Sbjct: 80401 gttgaatacacagaatgatg 80382
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>gb|AC011477.5| Homo sapiens chromosome 19 clone CTC-559E9, complete sequence
          Length = 178710

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    aaaaataaaatcaaggctgg 145
              ||||||||||||||||||||
Sbjct: 146939 aaaaataaaatcaaggctgg 146958
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>gb|AC020948.8| Homo sapiens chromosome 19 clone LLNLR-227D2, complete sequence
          Length = 41779

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  aaaaataaaatcaaggctgg 145
            ||||||||||||||||||||
Sbjct: 7750 aaaaataaaatcaaggctgg 7769
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>gb|AC159229.2| Mus musculus BAC clone RP24-351I2 from chromosome 12, complete sequence
          Length = 134517

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 354    agcttaatagatgttaatgtttgt 377
              |||||||| |||||||||||||||
Sbjct: 116801 agcttaattgatgttaatgtttgt 116778
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>gb|AC147785.3| Pan troglodytes BAC clone RP43-147G4 from chromosome 7, complete sequence
          Length = 166701

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    aaaaataaaatcaaggctgg 145
              ||||||||||||||||||||
Sbjct: 101231 aaaaataaaatcaaggctgg 101250
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>gb|AC009953.4| Homo sapiens BAC clone RP11-193F16 from 2, complete sequence
          Length = 160810

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    agtaacaaaaataaaatcaa 139
              ||||||||||||||||||||
Sbjct: 142943 agtaacaaaaataaaatcaa 142924
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>gb|AC010521.4|AC010521 Homo sapiens chromosome 19 clone LLNLR-269E4, complete sequence
          Length = 39156

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  aaaaataaaatcaaggctgg 145
            ||||||||||||||||||||
Sbjct: 9563 aaaaataaaatcaaggctgg 9544
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>emb|AL158058.5|CNS01RGJ Human chromosome 14 DNA sequence BAC R-260G13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 180372

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 354   agcttaatagatgttaatgtttgt 377
             |||||||| |||||||||||||||
Sbjct: 26794 agcttaattgatgttaatgtttgt 26817
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>gb|AC118196.12| Mus musculus chromosome 1, clone RP23-354J2, complete sequence
          Length = 189918

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 81     ggtggtgacaagcatgatatggtg 104
              |||||||||||||| |||||||||
Sbjct: 115227 ggtggtgacaagcaggatatggtg 115250
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>gb|AC154649.3| Mus musculus BAC clone RP23-156O5 from chromosome 14, complete sequence
          Length = 227676

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 369    aatgtttgtgatatatgtgg 388
              ||||||||||||||||||||
Sbjct: 106194 aatgtttgtgatatatgtgg 106175
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>gb|AC150744.2| Mus musculus BAC clone RP24-98O8 from 7, complete sequence
          Length = 191727

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 123    aacaaaaataaaatcaaggctgga 146
              |||||||||||||| |||||||||
Sbjct: 152157 aacaaaaataaaataaaggctgga 152134
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>emb|AL807756.9| Mouse DNA sequence from clone RP23-36M9 on chromosome 4, complete
             sequence
          Length = 247528

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 401   ggaatatcttctggctacatgcac 424
             |||||||||||||| |||||||||
Sbjct: 90861 ggaatatcttctggatacatgcac 90838
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>emb|AL671090.9| Mouse DNA sequence from clone RP23-154A10 on chromosome 4, complete
              sequence
          Length = 197665

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    agtaacaaaaataaaatcaa 139
              ||||||||||||||||||||
Sbjct: 132035 agtaacaaaaataaaatcaa 132016


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,063,655
Number of Sequences: 3902068
Number of extensions: 5063655
Number of successful extensions: 102480
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102318
Number of HSP's gapped (non-prelim): 157
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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