ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38h01 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 78.6 bits (192), Expect = 8e-15 Identities = 44/99 (44%), Positives = 58/99 (58%), Gaps = 9/99 (9%) Frame = +3 Query: 180 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 332 RG VK V SG +++ G + PPE+ I LS + A LARR V DEP+A+ Sbjct: 21 RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80 Query: 333 ESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLGDKT 449 +REFLRK +GKEV F ++ P GRE+G +YLG T Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDT 118 Score = 41.6 bits (96), Expect = 0.001 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Frame = +3 Query: 186 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 335 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 336 SREFLRKLCVGKEVTFRVDYTAP 404 +REFLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 78.2 bits (191), Expect = 1e-14 Identities = 48/118 (40%), Positives = 65/118 (55%), Gaps = 15/118 (12%) Frame = +3 Query: 141 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR 302 A A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LAR Sbjct: 2 ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61 Query: 303 RGGV---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLGDKT 449 R DEP+A+ +REFLRK +GKEV F ++ P GRE+G +YLG T Sbjct: 62 RAAATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDT 118 Score = 40.8 bits (94), Expect = 0.002 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Frame = +3 Query: 186 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 335 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 401 Query: 336 SREFLRKLCVGKEVTFRVDYTAP 404 +REFLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 78.2 bits (191), Expect = 1e-14 Identities = 46/111 (41%), Positives = 62/111 (55%), Gaps = 9/111 (8%) Frame = +3 Query: 144 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRG----- 308 + +S A RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 9 VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68 Query: 309 ----GVDEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLGDKT 449 DEP+A+++REF+RK +GKEV F V+ P GRE+G VYLG T Sbjct: 69 DTKDTPDEPWAFQAREFMRKKVIGKEVCFTVENKTPQ-GREYGMVYLGKDT 118 Score = 40.0 bits (92), Expect = 0.003 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 12/103 (11%) Frame = +3 Query: 186 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR-----------RGGVDEPFAW 332 KV V + D +++ K K+I LS + PRL R D P+ + Sbjct: 347 KVMQVVNADAIVV----KLNSGEYKTIHLSSIRPPRLEGEEKNKDKDKRFRPLYDIPYMF 402 Query: 333 ESREFLRKLCVGKEVTFRVDY-TAPNIGREFGTVYLGDKTLPT 458 E+REFLRK +GK+V VDY A E G ++T T Sbjct: 403 EAREFLRKKLIGKKVNVTVDYIRAATNAMEMGVPAFPERTCAT 445
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 77.8 bits (190), Expect = 1e-14 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 15/115 (13%) Frame = +3 Query: 150 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGG 311 A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 4 AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63 Query: 312 V---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLGDKT 449 DEP+A+ +REFLRK +GKEV F ++ P GRE+G +YLG T Sbjct: 64 ATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDT 117 Score = 41.2 bits (95), Expect = 0.001 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 10/83 (12%) Frame = +3 Query: 186 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 335 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 345 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 400 Query: 336 SREFLRKLCVGKEVTFRVDYTAP 404 +REFLRK +GK+V+ VDY P Sbjct: 401 AREFLRKKLIGKKVSVTVDYIRP 423
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 76.6 bits (187), Expect = 3e-14 Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 9/99 (9%) Frame = +3 Query: 180 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 332 RG +K V SG +++ G + PPE+ I LS + A LARR DEP+A+ Sbjct: 21 RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80 Query: 333 ESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLGDKT 449 +REFLRK +GKEV F ++ P GRE+G +YLG T Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDT 118 Score = 41.6 bits (96), Expect = 0.001 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Frame = +3 Query: 186 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 335 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 336 SREFLRKLCVGKEVTFRVDYTAP 404 +REFLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 33.1 bits (74), Expect = 0.37 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 14/75 (18%) Frame = +3 Query: 51 EGRDQPAGQTPSPESRIGRRRPL------------AAG--QSQGAIMASNTGASGWLRGK 188 + ++ AG P R R RPL AAG +S+GA + G RG Sbjct: 31 DAEEEGAGGRQDPRRRSIRLRPLPSPSPSPSAAAAAAGGAESRGAALGGAADGEGPARGA 90 Query: 189 VKAVTSGDCLLIMGS 233 K+ T+GDC GS Sbjct: 91 AKSSTNGDCRRFRGS 105
>HCN4_MOUSE (O70507) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Brain cyclic nucleotide gated channel 3) (BCNG-3) Length = 1186 Score = 31.2 bits (69), Expect = 1.4 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 9/70 (12%) Frame = +3 Query: 51 EGRDQPAGQTPSPESRIGRRRPL-------AAG--QSQGAIMASNTGASGWLRGKVKAVT 203 +G ++ AG P R R RPL AAG +S+GA + + T + G R K+ T Sbjct: 31 DGEEEGAGGRQDPSRRSIRLRPLPSPSPSVAAGCSESRGAALGA-TESEGPGRSAGKSST 89 Query: 204 SGDCLLIMGS 233 +GDC GS Sbjct: 90 NGDCRRFRGS 99
>VG20_BPT4 (P13334) Structural protein of head (Tail tube protein Gp20)| Length = 524 Score = 30.8 bits (68), Expect = 1.8 Identities = 12/42 (28%), Positives = 25/42 (59%) Frame = -3 Query: 434 VDSAKFSPDVRSCVIHSECDLLSYAKFPQKLPAFPSKWLIDS 309 +D +KFSP +++ ++ D+L++ F +K +W +DS Sbjct: 113 LDKSKFSPKIKNMMLDEFSDVLNHLSFQRKGSDHFRRWYVDS 154
>DUT_HUMAN (P33316) Deoxyuridine 5'-triphosphate nucleotidohydrolase,| mitochondrial precursor (EC 3.6.1.23) (dUTPase) (dUTP pyrophosphatase) Length = 252 Score = 30.0 bits (66), Expect = 3.1 Identities = 35/121 (28%), Positives = 46/121 (38%), Gaps = 5/121 (4%) Frame = +3 Query: 57 RDQPAGQTPSPESRIGRRRPLAAGQSQGAIMASNTGASGWLRGKVKAVTSGDCLLIMGST 236 R +PA + P+ + I R A SQG AS GA+GW KA G + Sbjct: 39 RARPAPRPPAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKA----------GGS 88 Query: 237 KAEIPPEKSITLSYLMAPRLARRGGVDEPFAWESREFLRKL-----CVGKEVTFRVDYTA 401 A P +I+ S P A GG+ FA S G ++ DYT Sbjct: 89 PAPGPETPAISPSKRARP--AEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTI 146 Query: 402 P 404 P Sbjct: 147 P 147
>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 29.6 bits (65), Expect = 4.1 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +3 Query: 117 LAAGQSQGAIMASNTGASGWLRGKVKAV----TSGDCLLIMGSTKAEIPPEKSITLSYLM 284 + AG S+ ++A +TG + W+ + A TS +LI S + EK++ Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291 Query: 285 APRLA 299 PR A Sbjct: 292 LPRTA 296
>Y38K_CORSE (Q39635) Hypothetical 38.1 kDa protein| Length = 338 Score = 29.3 bits (64), Expect = 5.3 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +3 Query: 321 PFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVY 434 PF E++E L KL VGK +T + Y GR G +Y Sbjct: 240 PFGKEAKEELIKLVVGKCLTVHI-YEEDRYGRSVGDIY 276
>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1203 Score = 28.9 bits (63), Expect = 6.9 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Frame = +3 Query: 51 EGRDQPAGQTPSPESRIGRRRPL-------AAGQSQGAIMASNTGAS-GWLRGKVKAVTS 206 + ++ AG P R R RPL AAG ++ A S G RG K+ T+ Sbjct: 31 DAEEEGAGGRQDPSRRSIRLRPLPSPSPSAAAGGTESRSSALGAADSEGPARGAGKSSTN 90 Query: 207 GDCLLIMGS 233 GDC GS Sbjct: 91 GDCRRFRGS 99
>AMBN_HUMAN (Q9NP70) Ameloblastin precursor| Length = 447 Score = 28.9 bits (63), Expect = 6.9 Identities = 21/59 (35%), Positives = 25/59 (42%) Frame = -1 Query: 208 PEVTAFTLPLSHPEAPVFDAMIAPWDWPAASGLRLPIRDSGEGVWPAG*SLPSRPDPDP 32 P + LPL E P+ +AP D P LP D + P G SLP PDP Sbjct: 146 PPIHLGHLPLQEGELPLVQQQVAPSDKPPKP--ELPGVDFAD---PQGPSLPGMDFPDP 199
>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 522 Score = 28.5 bits (62), Expect = 9.1 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Frame = -1 Query: 328 ANGSSTPPRRASLGAIRYDRVMDFSGG----ISALVLPMMRRQSPEVTAFTLPLSHPEAP 161 A G ++P +RASL D +GG +++L +PM QSP+ T + P AP Sbjct: 78 APGLASPTQRASL--FHSDPFAPGAGGGALPVASLAVPMDASQSPDSTPAPATPAAPAAP 135 Query: 160 VFDAMIAPWDWPAASG 113 A AP+ SG Sbjct: 136 A--APAAPFSSLGGSG 149
>RIBD2_BUCAI (P57534) 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC| 1.1.1.193) (HTP reductase) Length = 207 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = -3 Query: 395 VIHSECDLLSYAKFPQKLPAFPSKWLIDSTTTSQPWGHKV*QSDGLLW 252 V + E D + + FP K+ P + +IDS QP H + ++ G +W Sbjct: 44 VRYKELDKKTLSIFPNKIFQHPIRVIIDSKNRVQP-SHNIIKTKGKIW 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,251,703 Number of Sequences: 219361 Number of extensions: 1505440 Number of successful extensions: 4470 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4332 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4459 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
