ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38g10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_195850.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0050M22.6), mRNA Length = 2619 Score = 101 bits (51), Expect = 1e-18 Identities = 72/79 (91%) Strand = Plus / Plus Query: 181 ggaggaggcgcggcctctgaaggtggtgttcgcgtccccggcgaggtacttcaccgacgc 240 ||||||||||||||| ||| |||||||||| ||||| ||| ||||||||||||| ||||| Sbjct: 87 ggaggaggcgcggccgctggaggtggtgtttgcgtcgccgtcgaggtacttcacggacgc 146 Query: 241 ggcgccgatcgggaacggc 259 |||||| |||||||||||| Sbjct: 147 ggcgcccatcgggaacggc 165
>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0050M22, from chromosome 10, complete sequence Length = 145417 Score = 101 bits (51), Expect = 1e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 181 ggaggaggcgcggcctctgaaggtggtgttcgcgtccccggcgaggtacttcaccgacgc 240 ||||||||||||||| ||| |||||||||| ||||| ||| ||||||||||||| ||||| Sbjct: 49480 ggaggaggcgcggccgctggaggtggtgtttgcgtcgccgtcgaggtacttcacggacgc 49421 Query: 241 ggcgccgatcgggaacggc 259 |||||| |||||||||||| Sbjct: 49420 ggcgcccatcgggaacggc 49402
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 101 bits (51), Expect = 1e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 181 ggaggaggcgcggcctctgaaggtggtgttcgcgtccccggcgaggtacttcaccgacgc 240 ||||||||||||||| ||| |||||||||| ||||| ||| ||||||||||||| ||||| Sbjct: 9415996 ggaggaggcgcggccgctggaggtggtgtttgcgtcgccgtcgaggtacttcacggacgc 9415937 Query: 241 ggcgccgatcgggaacggc 259 |||||| |||||||||||| Sbjct: 9415936 ggcgcccatcgggaacggc 9415918
>dbj|AK109165.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-G12, full insert sequence Length = 556 Score = 101 bits (51), Expect = 1e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 181 ggaggaggcgcggcctctgaaggtggtgttcgcgtccccggcgaggtacttcaccgacgc 240 ||||||||||||||| ||| |||||||||| ||||| ||| ||||||||||||| ||||| Sbjct: 392 ggaggaggcgcggccgctggaggtggtgtttgcgtcgccgtcgaggtacttcacggacgc 333 Query: 241 ggcgccgatcgggaacggc 259 |||||| |||||||||||| Sbjct: 332 ggcgcccatcgggaacggc 314
>dbj|AK101675.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058F11, full insert sequence Length = 2868 Score = 101 bits (51), Expect = 1e-18 Identities = 72/79 (91%) Strand = Plus / Plus Query: 181 ggaggaggcgcggcctctgaaggtggtgttcgcgtccccggcgaggtacttcaccgacgc 240 ||||||||||||||| ||| |||||||||| ||||| ||| ||||||||||||| ||||| Sbjct: 136 ggaggaggcgcggccgctggaggtggtgtttgcgtcgccgtcgaggtacttcacggacgc 195 Query: 241 ggcgccgatcgggaacggc 259 |||||| |||||||||||| Sbjct: 196 ggcgcccatcgggaacggc 214
>dbj|AK067798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116E12, full insert sequence Length = 2491 Score = 101 bits (51), Expect = 1e-18 Identities = 72/79 (91%) Strand = Plus / Plus Query: 181 ggaggaggcgcggcctctgaaggtggtgttcgcgtccccggcgaggtacttcaccgacgc 240 ||||||||||||||| ||| |||||||||| ||||| ||| ||||||||||||| ||||| Sbjct: 186 ggaggaggcgcggccgctggaggtggtgtttgcgtcgccgtcgaggtacttcacggacgc 245 Query: 241 ggcgccgatcgggaacggc 259 |||||| |||||||||||| Sbjct: 246 ggcgcccatcgggaacggc 264
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 101 bits (51), Expect = 1e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 181 ggaggaggcgcggcctctgaaggtggtgttcgcgtccccggcgaggtacttcaccgacgc 240 ||||||||||||||| ||| |||||||||| ||||| ||| ||||||||||||| ||||| Sbjct: 9422035 ggaggaggcgcggccgctggaggtggtgtttgcgtcgccgtcgaggtacttcacggacgc 9421976 Query: 241 ggcgccgatcgggaacggc 259 |||||| |||||||||||| Sbjct: 9421975 ggcgcccatcgggaacggc 9421957
>gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0011F12, complete sequence Length = 122262 Score = 75.8 bits (38), Expect = 6e-11 Identities = 68/78 (87%) Strand = Plus / Minus Query: 182 gaggaggcgcggcctctgaaggtggtgttcgcgtccccggcgaggtacttcaccgacgcg 241 ||||||| |||||| |||||||||||||||| |||||||| | ||||||| |||||| Sbjct: 109327 gaggaggagcggccgctgaaggtggtgttcgactccccggccgagcacttcacggacgcg 109268 Query: 242 gcgccgatcgggaacggc 259 ||||| |||||||||||| Sbjct: 109267 gcgcccatcgggaacggc 109250
>dbj|AK100636.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110E05, full insert sequence Length = 2744 Score = 75.8 bits (38), Expect = 6e-11 Identities = 68/78 (87%) Strand = Plus / Plus Query: 182 gaggaggcgcggcctctgaaggtggtgttcgcgtccccggcgaggtacttcaccgacgcg 241 ||||||| |||||| |||||||||||||||| |||||||| | ||||||| |||||| Sbjct: 122 gaggaggagcggccgctgaaggtggtgttcgactccccggccgagcacttcacggacgcg 181 Query: 242 gcgccgatcgggaacggc 259 ||||| |||||||||||| Sbjct: 182 gcgcccatcgggaacggc 199
>dbj|AK066931.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091O15, full insert sequence Length = 2984 Score = 75.8 bits (38), Expect = 6e-11 Identities = 68/78 (87%) Strand = Plus / Plus Query: 182 gaggaggcgcggcctctgaaggtggtgttcgcgtccccggcgaggtacttcaccgacgcg 241 ||||||| |||||| |||||||||||||||| |||||||| | ||||||| |||||| Sbjct: 162 gaggaggagcggccgctgaaggtggtgttcgactccccggccgagcacttcacggacgcg 221 Query: 242 gcgccgatcgggaacggc 259 ||||| |||||||||||| Sbjct: 222 gcgcccatcgggaacggc 239
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 84 gcgatggcggcagcgaccgcgacgccggc 112 ||||||||||||||| ||||||||||||| Sbjct: 1403024 gcgatggcggcagcgcccgcgacgccggc 1402996
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Plus Query: 84 gcgatggcggcagcgaccgcgacgccggc 112 ||||||||||||||| ||||||||||||| Sbjct: 1651032 gcgatggcggcagcgcccgcgacgccggc 1651060
>gb|BT012333.1| Drosophila melanogaster AT16912 full insert cDNA Length = 1831 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Minus Query: 142 ggaagcggaagctgcggctgcggc 165 |||||||||||||||||||||||| Sbjct: 522 ggaagcggaagctgcggctgcggc 499
>ref|NM_169590.1| Drosophila melanogaster CG14853-RA, transcript variant A (CG14853), mRNA Length = 2379 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Minus Query: 142 ggaagcggaagctgcggctgcggc 165 |||||||||||||||||||||||| Sbjct: 522 ggaagcggaagctgcggctgcggc 499
>ref|NM_142119.2| Drosophila melanogaster CG14853-RB, transcript variant B (CG14853), mRNA Length = 2610 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Minus Query: 142 ggaagcggaagctgcggctgcggc 165 |||||||||||||||||||||||| Sbjct: 753 ggaagcggaagctgcggctgcggc 730
>gb|AY071572.1| Drosophila melanogaster RE63320 full length cDNA Length = 2625 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Minus Query: 142 ggaagcggaagctgcggctgcggc 165 |||||||||||||||||||||||| Sbjct: 752 ggaagcggaagctgcggctgcggc 729
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 48.1 bits (24), Expect = 0.014 Identities = 27/28 (96%) Strand = Plus / Plus Query: 92 ggcagcgaccgcgacgccggcggcgagt 119 |||||||||||||||||||||| ||||| Sbjct: 5058568 ggcagcgaccgcgacgccggcgccgagt 5058595
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Minus Query: 90 gcggcagcgaccgcgacgccggcg 113 |||||||||||||||||||||||| Sbjct: 14657166 gcggcagcgaccgcgacgccggcg 14657143 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gccggcggaggaggcgcggc 194 |||||||||||||||||||| Sbjct: 5813309 gccggcggaggaggcgcggc 5813328
>gb|AC007809.8|AC007809 Drosophila melanogaster, chromosome 3R, region 88C-88C, BAC clone BACR45M03, complete sequence Length = 183439 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Minus Query: 142 ggaagcggaagctgcggctgcggc 165 |||||||||||||||||||||||| Sbjct: 95638 ggaagcggaagctgcggctgcggc 95615
>dbj|AP004855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1538_H05 Length = 132282 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Minus Query: 90 gcggcagcgaccgcgacgccggcg 113 |||||||||||||||||||||||| Sbjct: 47964 gcggcagcgaccgcgacgccggcg 47941
>dbj|AK108038.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C11, full insert sequence Length = 1094 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Minus Query: 90 gcggcagcgaccgcgacgccggcg 113 |||||||||||||||||||||||| Sbjct: 94 gcggcagcgaccgcgacgccggcg 71
>gb|AE003705.3| Drosophila melanogaster chromosome 3R, section 43 of 118 of the complete sequence Length = 216741 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Minus Query: 142 ggaagcggaagctgcggctgcggc 165 |||||||||||||||||||||||| Sbjct: 135369 ggaagcggaagctgcggctgcggc 135346
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 46.1 bits (23), Expect = 0.054 Identities = 29/31 (93%) Strand = Plus / Minus Query: 83 ggcgatggcggcagcgaccgcgacgccggcg 113 |||||||||| ||||| |||||||||||||| Sbjct: 285587 ggcgatggcgacagcggccgcgacgccggcg 285557 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 gccggcgatggcggcagcgaccgc 103 ||||||||||||||||||| |||| Sbjct: 278227 gccggcgatggcggcagcgcccgc 278250
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.054 Identities = 26/27 (96%) Strand = Plus / Minus Query: 155 gcggctgcggcggctgggtggccggcg 181 ||||||| ||||||||||||||||||| Sbjct: 2985795 gcggctggggcggctgggtggccggcg 2985769
>ref|XM_521306.1| PREDICTED: Pan troglodytes similar to hypothetical protein (LOC465907), mRNA Length = 997 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 151 agctgcggctgcggcggctggg 172 |||||||||||||||||||||| Sbjct: 242 agctgcggctgcggcggctggg 263
>ref|NM_022735.3| Homo sapiens acyl-Coenzyme A binding domain containing 3 (ACBD3), mRNA Length = 3581 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Plus Query: 161 gcggcggctgggtggccggcggaggaggcgcggc 194 |||||||||||| | |||||||||||||||||| Sbjct: 234 gcggcggctgggggcgcggcggaggaggcgcggc 267
>gb|BC060792.1| Homo sapiens acyl-Coenzyme A binding domain containing 3, mRNA (cDNA clone MGC:71593 IMAGE:4813993), complete cds Length = 3358 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Plus Query: 161 gcggcggctgggtggccggcggaggaggcgcggc 194 |||||||||||| | |||||||||||||||||| Sbjct: 230 gcggcggctgggggcgcggcggaggaggcgcggc 263
>emb|AL592045.28| Human DNA sequence from clone RP11-275I14 on chromosome 1 Contains the ACBD3 gene for acyl-Coenzyme A binding domain containing 3, the gene for a novel protein, a ribosomal protein L34 (RPL34) pseudogene and the MIXL1 gene for Mix1 homeobox-like 1 (Xenopus laevis), complete sequence Length = 99251 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Minus Query: 161 gcggcggctgggtggccggcggaggaggcgcggc 194 |||||||||||| | |||||||||||||||||| Sbjct: 58656 gcggcggctgggggcgcggcggaggaggcgcggc 58623
>ref|XM_776653.1| PREDICTED: Strongylocentrotus purpuratus similar to castor homolog 1, zinc finger (LOC576335), mRNA Length = 2862 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Minus Query: 143 gaagcggaagctgcggctgcggcggc 168 ||||||||||||||||| |||||||| Sbjct: 1124 gaagcggaagctgcggcggcggcggc 1099
>gb|AE008766.1| Salmonella typhimurium LT2, section 70 of 220 of the complete genome Length = 27275 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Plus Query: 84 gcgatggcggcagcgaccgcgacgcc 109 ||||||||||||||| |||||||||| Sbjct: 26011 gcgatggcggcagcgcccgcgacgcc 26036
>gb|BC045533.1| Homo sapiens acyl-Coenzyme A binding domain containing 3, mRNA (cDNA clone MGC:57123 IMAGE:5259930), complete cds Length = 3560 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Plus Query: 161 gcggcggctgggtggccggcggaggaggcgcggc 194 |||||||||||| | |||||||||||||||||| Sbjct: 220 gcggcggctgggggcgcggcggaggaggcgcggc 253
>gb|AY150218.1| Homo sapiens peripherial benzodiazepine receptor associated protein mRNA, complete cds Length = 3572 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Plus Query: 161 gcggcggctgggtggccggcggaggaggcgcggc 194 |||||||||||| | |||||||||||||||||| Sbjct: 213 gcggcggctgggggcgcggcggaggaggcgcggc 246
>gb|AF274572.4| Homo sapiens chromosome X clone RP4-741O10 map q28, complete sequence Length = 126522 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 151 agctgcggctgcggcggctggg 172 |||||||||||||||||||||| Sbjct: 12402 agctgcggctgcggcggctggg 12423
>gb|AF003626.2| Homo sapiens chromosome X clone ICRFXc104-M0525, LL0XNC01-C1233, ICRFXc104-C1284, Qc-3C1, LL0XNC01-B1439, LL0XNC01-220B3, LL0XNC01-57B6, Qc-12C11 map q28, complete sequence Length = 86834 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 151 agctgcggctgcggcggctggg 172 |||||||||||||||||||||| Sbjct: 64949 agctgcggctgcggcggctggg 64970
>dbj|AK025520.1| Homo sapiens cDNA: FLJ21867 fis, clone HEP02419 Length = 2140 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Plus Query: 161 gcggcggctgggtggccggcggaggaggcgcggc 194 |||||||||||| | |||||||||||||||||| Sbjct: 235 gcggcggctgggggcgcggcggaggaggcgcggc 268
>emb|CT009557.4| Pan troglodytes chromosome X clone PTB-010G23 map Xq28, complete sequence Length = 244504 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 151 agctgcggctgcggcggctggg 172 |||||||||||||||||||||| Sbjct: 197286 agctgcggctgcggcggctggg 197265
>gb|BC039575.1| Homo sapiens acyl-Coenzyme A binding domain containing 3, mRNA (cDNA clone IMAGE:5725757), containing frame-shift errors Length = 1995 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Plus Query: 161 gcggcggctgggtggccggcggaggaggcgcggc 194 |||||||||||| | |||||||||||||||||| Sbjct: 212 gcggcggctgggggcgcggcggaggaggcgcggc 245
>dbj|AB043587.2| Homo sapiens gcp60 mRNA for golgi resident protein GCP60, complete cds Length = 3598 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Plus Query: 161 gcggcggctgggtggccggcggaggaggcgcggc 194 |||||||||||| | |||||||||||||||||| Sbjct: 242 gcggcggctgggggcgcggcggaggaggcgcggc 275
>ref|NM_191282.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1170 Score = 42.1 bits (21), Expect = 0.85 Identities = 27/29 (93%) Strand = Plus / Plus Query: 89 ggcggcagcgaccgcgacgccggcggcga 117 |||||||||||| |||||| ||||||||| Sbjct: 283 ggcggcagcgacagcgacggcggcggcga 311
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 gaccgcgacgccggcggcgag 118 ||||||||||||||||||||| Sbjct: 298098 gaccgcgacgccggcggcgag 298118
>emb|AL627270.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 6/20 Length = 266050 Score = 42.1 bits (21), Expect = 0.85 Identities = 27/29 (93%) Strand = Plus / Minus Query: 84 gcgatggcggcagcgaccgcgacgccggc 112 |||||||| |||||| ||||||||||||| Sbjct: 174131 gcgatggcagcagcgcccgcgacgccggc 174103
>emb|AJ784875.1| Bordetella pertussis prn gene for pertactin Length = 2739 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 gctgcggctgcggcggctggg 172 ||||||||||||||||||||| Sbjct: 1783 gctgcggctgcggcggctggg 1763
>emb|AJ430832.1|BPE430832 Bordetella pertussis prn gene for pertactin, isolate B442 Length = 2739 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 gctgcggctgcggcggctggg 172 ||||||||||||||||||||| Sbjct: 1783 gctgcggctgcggcggctggg 1763
>emb|AJ132095.1|BPE132095 Bordetella pertussis (strain 18323) prn6 gene Length = 2724 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 gctgcggctgcggcggctggg 172 ||||||||||||||||||||| Sbjct: 1768 gctgcggctgcggcggctggg 1748
>emb|AJ006160.2|BPA006160 Bordetella pertussis prn gene, strain CZ Length = 2898 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 gctgcggctgcggcggctggg 172 ||||||||||||||||||||| Sbjct: 1830 gctgcggctgcggcggctggg 1810
>emb|AJ006152.2|BPA006152 Bordetella pertussis prn gene, strain 18323 Length = 2939 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 gctgcggctgcggcggctggg 172 ||||||||||||||||||||| Sbjct: 1871 gctgcggctgcggcggctggg 1851
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 gcggcggctgggtggccggcg 181 ||||||||||||||||||||| Sbjct: 145223 gcggcggctgggtggccggcg 145203
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 cccatggccggcgatggcggcagcg 98 |||||||||||||| |||||||||| Sbjct: 23008073 cccatggccggcgaaggcggcagcg 23008049
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.85 Identities = 27/29 (93%) Strand = Plus / Plus Query: 89 ggcggcagcgaccgcgacgccggcggcga 117 |||||||||||| |||||| ||||||||| Sbjct: 31721638 ggcggcagcgacagcgacggcggcggcga 31721666 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Plus Query: 75 ccatggccggcgatggcggcagcga 99 |||||||||||||||||| |||||| Sbjct: 19673255 ccatggccggcgatggcgtcagcga 19673279
>gb|AF228035.1|AF228035 Tupaia herpesvirus viral terminase (VTER), T94 protein (T94), T93 protein (T93), T92 protein (T92), T90 protein (T90), and T91 protein (T91) genes, complete cds Length = 7221 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 gcggcggctgggtggccggcg 181 ||||||||||||||||||||| Sbjct: 4727 gcggcggctgggtggccggcg 4747
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 42.1 bits (21), Expect = 0.85 Identities = 27/29 (93%) Strand = Plus / Plus Query: 89 ggcggcagcgaccgcgacgccggcggcga 117 |||||||||||| |||||| ||||||||| Sbjct: 135370 ggcggcagcgacagcgacggcggcggcga 135398
>dbj|AP004362.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0014E04 Length = 146710 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Plus Query: 75 ccatggccggcgatggcggcagcga 99 |||||||||||||||||| |||||| Sbjct: 141707 ccatggccggcgatggcgtcagcga 141731
>dbj|AP004360.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1166B08 Length = 147667 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Plus Query: 75 ccatggccggcgatggcggcagcga 99 |||||||||||||||||| |||||| Sbjct: 21877 ccatggccggcgatggcgtcagcga 21901
>gb|AF456357.1| Bordetella pertussis strain MO-20 pertactin outer membrane protein (prnA) gene, prnA(6) allele, complete cds Length = 2792 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 gctgcggctgcggcggctggg 172 ||||||||||||||||||||| Sbjct: 1799 gctgcggctgcggcggctggg 1779
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 catggccggcgatggcggcag 96 ||||||||||||||||||||| Sbjct: 3230498 catggccggcgatggcggcag 3230478
>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652A05 Length = 150455 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 cccatggccggcgatggcggcagcg 98 |||||||||||||| |||||||||| Sbjct: 74617 cccatggccggcgaaggcggcagcg 74593
>gb|AE005035.1| Halobacterium sp. NRC-1 section 66 of 170 of the complete genome Length = 10016 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 ggcggcagcgaccgcgacgcc 109 ||||||||||||||||||||| Sbjct: 5174 ggcggcagcgaccgcgacgcc 5194
>dbj|AK108553.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E08, full insert sequence Length = 1111 Score = 42.1 bits (21), Expect = 0.85 Identities = 27/29 (93%) Strand = Plus / Plus Query: 89 ggcggcagcgaccgcgacgccggcggcga 117 |||||||||||| |||||| ||||||||| Sbjct: 366 ggcggcagcgacagcgacggcggcggcga 394
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 42.1 bits (21), Expect = 0.85 Identities = 27/29 (93%) Strand = Plus / Plus Query: 84 gcgatggcggcagcgaccgcgacgccggc 112 |||||||| |||||| ||||||||||||| Sbjct: 1500794 gcgatggcagcagcgcccgcgacgccggc 1500822
>gb|DQ141807.1| Bordetella pertussis strain B1121 pertactin gene, partial cds Length = 2021 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 gctgcggctgcggcggctggg 172 ||||||||||||||||||||| Sbjct: 1666 gctgcggctgcggcggctggg 1646
>dbj|AP006680.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45D03, TM0375a, complete sequence Length = 58157 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Minus Query: 85 cgatggcggcagcgaccgcgacgcc 109 |||||||||||||||| |||||||| Sbjct: 56713 cgatggcggcagcgacagcgacgcc 56689
>ref|XM_464547.1| Oryza sativa (japonica cultivar-group), mRNA Length = 766 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gccggcggaggaggcgcggc 194 |||||||||||||||||||| Sbjct: 186 gccggcggaggaggcgcggc 167
>ref|NM_183683.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 822 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 ggtggccggcggaggaggcgcggc 194 ||||||||| |||||||||||||| Sbjct: 312 ggtggccggaggaggaggcgcggc 335
>ref|NM_187740.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2655 Score = 40.1 bits (20), Expect = 3.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 83 ggcgatggcggcagcgaccgcgacgccggcgg 114 |||||||||||||||| | |||||| |||||| Sbjct: 83 ggcgatggcggcagcggcagcgacggcggcgg 114
>ref|XM_363943.1| Magnaporthe grisea 70-15 hypothetical protein (MG01869.4) partial mRNA Length = 3354 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 gctgcggctgcggcggctgg 171 |||||||||||||||||||| Sbjct: 2791 gctgcggctgcggcggctgg 2772
>gb|AY611646.1| Penicillium verruculosum carbon catabolite repressor (creA) gene, complete cds Length = 4522 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 gctgcggctgcggcggctgg 171 |||||||||||||||||||| Sbjct: 3047 gctgcggctgcggcggctgg 3066
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 83 ggcgatggcggcagcgaccgcgacgccggcgg 114 |||||||||||||||| | |||||| |||||| Sbjct: 3504141 ggcgatggcggcagcggcagcgacggcggcgg 3504110
>gb|AC098732.3| Mus musculus BAC clone RP23-3L20 from 3, complete sequence Length = 274210 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 58 gagccagctgttttcccccatggc 81 |||||||||||||||| ||||||| Sbjct: 154947 gagccagctgttttcctccatggc 154970
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 cgatggcggcagcgaccgcg 104 |||||||||||||||||||| Sbjct: 777633 cgatggcggcagcgaccgcg 777652
>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29 Length = 292200 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 gcagcgaccgcgacgccggc 112 |||||||||||||||||||| Sbjct: 197937 gcagcgaccgcgacgccggc 197918
>gb|AE006008.1| Caulobacter crescentus CB15 section 334 of 359 of the complete genome Length = 14619 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 gtggccggcggaggaggcgcggcc 195 |||||||||||||| ||||||||| Sbjct: 9791 gtggccggcggaggcggcgcggcc 9768
>gb|AC090433.10| Chlamydomonas reinhardtii clone cr-19b23, complete sequence Length = 118183 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 gctgcggctgcggcggctgg 171 |||||||||||||||||||| Sbjct: 14131 gctgcggctgcggcggctgg 14112
>gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1123F12, complete sequence Length = 103330 Score = 40.1 bits (20), Expect = 3.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 83 ggcgatggcggcagcgaccgcgacgccggcgg 114 |||||||||||||||| | |||||| |||||| Sbjct: 6234 ggcgatggcggcagcggcagcgacggcggcgg 6265
>gb|AC022784.7| Homo sapiens chromosome 8, clone RP11-10A14, complete sequence Length = 187253 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 agctgcggctgcggcggctg 170 |||||||||||||||||||| Sbjct: 168560 agctgcggctgcggcggctg 168579
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 ggcagcgaccgcgacgccggcggc 115 ||||||| |||||||||||||||| Sbjct: 836188 ggcagcggccgcgacgccggcggc 836165
>gb|AC005713.8|AC005713 Drosophila melanogaster, chromosome 2R, region 54A1-54B2, BAC clone BACR48A11, complete sequence Length = 157507 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 93 gcagcgaccgcgacgccggcggcgagtg 120 |||||||| |||||||||||| |||||| Sbjct: 75431 gcagcgactgcgacgccggcgtcgagtg 75458
>gb|AC007520.8|AC007520 Drosophila melanogaster, chromosome 2R, region 53D-54A, BAC clone BACR11M15, complete sequence Length = 170994 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 93 gcagcgaccgcgacgccggcggcgagtg 120 |||||||| |||||||||||| |||||| Sbjct: 148069 gcagcgactgcgacgccggcgtcgagtg 148096
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 83 ggcgatggcggcagcgaccgcgacgccggcgg 114 |||||||||||||||| | |||||| |||||| Sbjct: 3504252 ggcgatggcggcagcggcagcgacggcggcgg 3504221
>gb|AE004735.1| Pseudomonas aeruginosa PAO1, section 296 of 529 of the complete genome Length = 11976 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ggcggctgggtggccggcgg 182 |||||||||||||||||||| Sbjct: 4755 ggcggctgggtggccggcgg 4774
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 gctgcggctgcggcggctgggtgg 175 ||||||||||||||| |||||||| Sbjct: 1977607 gctgcggctgcggcgcctgggtgg 1977584
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 40.1 bits (20), Expect = 3.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 83 ggcgatggcggcagcgaccgcgacgccggcgg 114 |||||||||||||||| | |||||| |||||| Sbjct: 21794 ggcgatggcggcagcggcagcgacggcggcgg 21763
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 cggcgatggcggcagcgacc 101 |||||||||||||||||||| Sbjct: 3054778 cggcgatggcggcagcgacc 3054759
>gb|AE005044.1| Halobacterium sp. NRC-1 section 75 of 170 of the complete genome Length = 13431 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gcgaccgcgacgccggcggc 115 |||||||||||||||||||| Sbjct: 264 gcgaccgcgacgccggcggc 283
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gccggcggaggaggcgcggc 194 |||||||||||||||||||| Sbjct: 43111 gccggcggaggaggcgcggc 43130
>dbj|AK110163.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-161-F08, full insert sequence Length = 3211 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 cggaagctgcggctgcggcggctg 170 ||||||||||||||||||| |||| Sbjct: 949 cggaagctgcggctgcggctgctg 926
>ref|NM_211792.1| Eremothecium gossypii AGR065Wp (AGR065W), mRNA Length = 981 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 ggcagcgaccgcgacgccggcggc 115 ||||||| |||||||||||||||| Sbjct: 312 ggcagcggccgcgacgccggcggc 289
>dbj|AK066727.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075K01, full insert sequence Length = 1070 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gccggcggaggaggcgcggc 194 |||||||||||||||||||| Sbjct: 185 gccggcggaggaggcgcggc 166
>gb|AE003804.4| Drosophila melanogaster chromosome 2R, section 46 of 73 of the complete sequence Length = 260337 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 93 gcagcgaccgcgacgccggcggcgagtg 120 |||||||| |||||||||||| |||||| Sbjct: 211194 gcagcgactgcgacgccggcgtcgagtg 211221
>gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete sequence Length = 53591 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 agctgcggctgcggcggctg 170 |||||||||||||||||||| Sbjct: 40873 agctgcggctgcggcggctg 40854
>gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence Length = 536165 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gaccgcgacgccggcggcga 117 |||||||||||||||||||| Sbjct: 267385 gaccgcgacgccggcggcga 267404
>dbj|AB031231.1| Pseudomonas aeruginosa gene, trpF, accD, folC, dedD, cvpA and purF, partial and complete cds Length = 4776 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ggcggctgggtggccggcgg 182 |||||||||||||||||||| Sbjct: 2750 ggcggctgggtggccggcgg 2731 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,847,775 Number of Sequences: 3902068 Number of extensions: 1847775 Number of successful extensions: 57351 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55693 Number of HSP's gapped (non-prelim): 1658 length of query: 259 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 237 effective length of database: 17,147,199,772 effective search space: 4063886345964 effective search space used: 4063886345964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
