ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl38g03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 135 bits (68), Expect = 2e-28 Identities = 89/96 (92%) Strand = Plus / Plus Query: 137 gcgggcggcgcgctgcggttcgcgcaccggctgctctcgagccgcctcgccacggccgtc 196 ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 16578763 gcggggggcgcgctgcggttcgcgcaccggctgctctcgagccgcctcgcgccagccgtc 16578822 Query: 197 ctccccgacgagcacgcggtcgcggaggccatcaag 232 |||||||||||||||||| |||||||| || ||||| Sbjct: 16578823 ctccccgacgagcacgcgctcgcggagtccgtcaag 16578858 Score = 105 bits (53), Expect = 1e-19 Identities = 68/73 (93%) Strand = Plus / Plus Query: 65 atggacgagcaccagacccaggatctcgtcaaggagctcgtcctccgcctcgcctccgcc 124 |||||||| ||||| |||||||||||||||||||||||||||| ||||||| ||||||| Sbjct: 16578679 atggacgaccaccaaacccaggatctcgtcaaggagctcgtccaccgcctcatctccgcc 16578738 Query: 125 gaatccggcggcg 137 ||||||||||||| Sbjct: 16578739 gaatccggcggcg 16578751 Score = 93.7 bits (47), Expect = 5e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 282 acctccacgccaagctctccgcccggtcccgccccgcctccctctggcccctcctctacc 341 ||||||||||||||||||||||| |||| ||||| || || |||||||| |||||||||| Sbjct: 16578908 acctccacgccaagctctccgccaggtcgcgcccggcgtcgctctggccgctcctctacc 16578967 Query: 342 tgctcgactcg 352 ||||||||||| Sbjct: 16578968 tgctcgactcg 16578978
>dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1123_B08 Length = 134028 Score = 135 bits (68), Expect = 2e-28 Identities = 89/96 (92%) Strand = Plus / Plus Query: 137 gcgggcggcgcgctgcggttcgcgcaccggctgctctcgagccgcctcgccacggccgtc 196 ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 110988 gcggggggcgcgctgcggttcgcgcaccggctgctctcgagccgcctcgcgccagccgtc 111047 Query: 197 ctccccgacgagcacgcggtcgcggaggccatcaag 232 |||||||||||||||||| |||||||| || ||||| Sbjct: 111048 ctccccgacgagcacgcgctcgcggagtccgtcaag 111083 Score = 105 bits (53), Expect = 1e-19 Identities = 68/73 (93%) Strand = Plus / Plus Query: 65 atggacgagcaccagacccaggatctcgtcaaggagctcgtcctccgcctcgcctccgcc 124 |||||||| ||||| |||||||||||||||||||||||||||| ||||||| ||||||| Sbjct: 110904 atggacgaccaccaaacccaggatctcgtcaaggagctcgtccaccgcctcatctccgcc 110963 Query: 125 gaatccggcggcg 137 ||||||||||||| Sbjct: 110964 gaatccggcggcg 110976 Score = 93.7 bits (47), Expect = 5e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 282 acctccacgccaagctctccgcccggtcccgccccgcctccctctggcccctcctctacc 341 ||||||||||||||||||||||| |||| ||||| || || |||||||| |||||||||| Sbjct: 111133 acctccacgccaagctctccgccaggtcgcgcccggcgtcgctctggccgctcctctacc 111192 Query: 342 tgctcgactcg 352 ||||||||||| Sbjct: 111193 tgctcgactcg 111203
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 127 atccggcggcgcgggcggcgcg 148 |||||||||||||||||||||| Sbjct: 3772096 atccggcggcgcgggcggcgcg 3772117 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cagccgcccgcccggctcga 50 |||||||||||||||||||| Sbjct: 4225147 cagccgcccgcccggctcga 4225166
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 125 gaatccggcggcgcgggcggcgcgct 150 ||||||| |||||||||||||||||| Sbjct: 2027986 gaatccgccggcgcgggcggcgcgct 2028011
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 112 cctcgcctccgccgaatccggcggcg 137 |||||||||||||| ||||||||||| Sbjct: 2476560 cctcgcctccgccggatccggcggcg 2476585
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 137 gcgggcggcgcgctgcggttcg 158 |||||||||||||||||||||| Sbjct: 389902 gcgggcggcgcgctgcggttcg 389923
>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13 Length = 349563 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 127 atccggcggcgcgggcggcgcg 148 |||||||||||||||||||||| Sbjct: 312200 atccggcggcgcgggcggcgcg 312221
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 125 gaatccggcggcgcgggcggcgcgct 150 ||||||| |||||||||||||||||| Sbjct: 189491 gaatccgccggcgcgggcggcgcgct 189516
>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14 Length = 308050 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 127 atccggcggcgcgggcggcgcg 148 |||||||||||||||||||||| Sbjct: 290503 atccggcggcgcgggcggcgcg 290524
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 125 gaatccggcggcgcgggcggcgcgct 150 ||||||| |||||||||||||||||| Sbjct: 2135580 gaatccgccggcgcgggcggcgcgct 2135555
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 112 cctcgcctccgccgaatccggcggcg 137 |||||||||||||| ||||||||||| Sbjct: 2476670 cctcgcctccgccggatccggcggcg 2476695
>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09, complete sequence Length = 106057 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 112 cctcgcctccgccgaatccggcggcg 137 |||||||||||||| ||||||||||| Sbjct: 49056 cctcgcctccgccggatccggcggcg 49081
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 114 tcgcctccgccgaatccggcgg 135 |||||||||||||||||||||| Sbjct: 5098716 tcgcctccgccgaatccggcgg 5098695 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 gcgctgcggttcgcgcaccgg 166 ||||||||||||||||||||| Sbjct: 604813 gcgctgcggttcgcgcaccgg 604833
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 136 cgcgggcggcgcgctgcggttcgcg 160 ||||||||||||||||| ||||||| Sbjct: 400679 cgcgggcggcgcgctgcagttcgcg 400703
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 136 cgcgggcggcgcgctgcggttcgcg 160 ||||||||||||||||| ||||||| Sbjct: 1131402 cgcgggcggcgcgctgcagttcgcg 1131426
>emb|BX842584.1| Mycobacterium tuberculosis H37Rv complete genome; segment 13/13 Length = 244800 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 cggcggcgcgggcggcgcgctgcgg 154 ||||| ||||||||||||||||||| Sbjct: 226759 cggcgccgcgggcggcgcgctgcgg 226783 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cagccgcccgcccggctcga 50 |||||||||||||||||||| Sbjct: 66101 cagccgcccgcccggctcga 66120
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 cggcgcgggcggcgcgctgcg 153 ||||||||||||||||||||| Sbjct: 212431 cggcgcgggcggcgcgctgcg 212411
>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14 Length = 347894 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 cggcgcgggcggcgcgctgcg 153 ||||||||||||||||||||| Sbjct: 90854 cggcgcgggcggcgcgctgcg 90874
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 cggcgcgggcggcgcgctgcg 153 ||||||||||||||||||||| Sbjct: 29606 cggcgcgggcggcgcgctgcg 29626
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 136 cgcgggcggcgcgctgcggttcgcg 160 ||||||||||||||||| ||||||| Sbjct: 1012362 cgcgggcggcgcgctgcagttcgcg 1012386
>emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 14/14 Length = 278492 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 cggcggcgcgggcggcgcgctgcgg 154 ||||| ||||||||||||||||||| Sbjct: 260452 cggcgccgcgggcggcgcgctgcgg 260476 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cagccgcccgcccggctcga 50 |||||||||||||||||||| Sbjct: 102128 cagccgcccgcccggctcga 102147
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 gcggcgcgggcggcgcgctgc 152 ||||||||||||||||||||| Sbjct: 251966 gcggcgcgggcggcgcgctgc 251986
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 ccggcggcgcgggcggcgcgc 149 ||||||||||||||||||||| Sbjct: 4090610 ccggcggcgcgggcggcgcgc 4090630
>gb|AF365951.1|AF365951 Zea mays early light-inducible protein ELIP mRNA, complete cds; nuclear gene for chloroplast product Length = 852 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 206 gagcacgcggtcgcggaggccatca 230 |||| |||||||||||||||||||| Sbjct: 142 gagctcgcggtcgcggaggccatca 118
>gb|AF139177.1|AF139177 Streptomyces lividans aerial mycelium formation gene cluster; RamS (ramS), putative ATP binding membrane translocator (ramA), putative ATP binding membrane translocator (ramB), and putative two component response regulator (ramR) genes, complete cds Length = 6062 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 gcggcgcgggcggcgcgctgc 152 ||||||||||||||||||||| Sbjct: 424 gcggcgcgggcggcgcgctgc 444
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 157 cgcgcaccggctgctctcgagccgc 181 ||||||||||||||| ||||||||| Sbjct: 1621482 cgcgcaccggctgctttcgagccgc 1621506
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 134 ggcgcgggcggcgcgctgcggttcgcgca 162 ||||| |||||||||||| |||||||||| Sbjct: 1759303 ggcgccggcggcgcgctggggttcgcgca 1759331 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccggcggcgcgggcggcgcg 148 |||||||||||||||||||| Sbjct: 87320 ccggcggcgcgggcggcgcg 87301
>gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, complete genome Length = 161046 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 ccggcggcgcgggcggcgcgc 149 ||||||||||||||||||||| Sbjct: 135281 ccggcggcgcgggcggcgcgc 135301
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 ccggcggcgcgggcggcgcgc 149 ||||||||||||||||||||| Sbjct: 4095210 ccggcggcgcgggcggcgcgc 4095230
>gb|U03771.1|SCU03771 Streptomyces coelicolor A3(2) aerial mycelium formation gene cluster (ramA, ramB, and ramR) genes, complete cds Length = 6630 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 gcggcgcgggcggcgcgctgc 152 ||||||||||||||||||||| Sbjct: 424 gcggcgcgggcggcgcgctgc 444
>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940130D9, complete sequence Length = 117683 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 cgcgggcggcgcgctgcggt 155 |||||||||||||||||||| Sbjct: 108835 cgcgggcggcgcgctgcggt 108816
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tccggcggcgcgggcggcgc 147 |||||||||||||||||||| Sbjct: 587717 tccggcggcgcgggcggcgc 587736
>ref|NM_189940.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2853 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 95 aaggagctcgtcctccgcctcgcctccgccga 126 ||||||||| |||||||||||| || |||||| Sbjct: 199 aaggagctcctcctccgcctcgtctacgccga 230
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggcggcgcgggcggcgcgct 150 |||||||||||||||||||| Sbjct: 597139 ggcggcgcgggcggcgcgct 597158
>gb|AC146523.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0045D11 map near 50283S, complete sequence Length = 148306 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 tcctccgcctcgcctccgcc 124 |||||||||||||||||||| Sbjct: 62910 tcctccgcctcgcctccgcc 62891
>ref|XM_150243.4| PREDICTED: Mus musculus cDNA sequence BC042396 (BC042396), mRNA Length = 8319 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ggcccctcctctacctgctc 346 |||||||||||||||||||| Sbjct: 3170 ggcccctcctctacctgctc 3189
>gb|AC112330.5| Rattus norvegicus 15 BAC CH230-185E8 (Children's Hospital Oakland Research Institute) complete sequence Length = 158526 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ccgcccggtcccgccccgcc 319 |||||||||||||||||||| Sbjct: 120273 ccgcccggtcccgccccgcc 120254
>gb|AC130279.5| Mus musculus chromosome 1, clone RP24-394G12, complete sequence Length = 207735 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tcccgccccgcctccctctg 327 |||||||||||||||||||| Sbjct: 158951 tcccgccccgcctccctctg 158932
>gb|AE009095.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 121 of 256 of the complete sequence Length = 10601 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 tcctccgcctcgcctccgcc 124 |||||||||||||||||||| Sbjct: 351 tcctccgcctcgcctccgcc 370
>gb|AC115359.5| Mus musculus BAC clone RP23-190K20 from chromosome 2, complete sequence Length = 184634 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 gcctccctctggcccctcct 336 |||||||||||||||||||| Sbjct: 48252 gcctccctctggcccctcct 48271
>gb|DQ013294.1| Polyangium cellulosum strain So ce12 disorazole biosynthesis gene cluster, complete sequence Length = 84868 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccggcggcgcgggcggcgcg 148 |||||||||||||||||||| Sbjct: 8532 ccggcggcgcgggcggcgcg 8551
>ref|XM_911187.2| PREDICTED: Mus musculus neurobeachin-like 2, transcript variant 3 (Nbeal2), mRNA Length = 8467 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ggcccctcctctacctgctc 346 |||||||||||||||||||| Sbjct: 3249 ggcccctcctctacctgctc 3268
>ref|XM_979409.1| PREDICTED: Mus musculus neurobeachin-like 2 (Nbeal2), mRNA Length = 8799 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ggcccctcctctacctgctc 346 |||||||||||||||||||| Sbjct: 3249 ggcccctcctctacctgctc 3268
>ref|XM_977572.1| PREDICTED: Mus musculus neurobeachin-like 2 (Nbeal2), mRNA Length = 8799 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ggcccctcctctacctgctc 346 |||||||||||||||||||| Sbjct: 3249 ggcccctcctctacctgctc 3268
>gb|AC113977.16| Mus musculus chromosome 1, clone RP23-161E13, complete sequence Length = 235738 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tcccgccccgcctccctctg 327 |||||||||||||||||||| Sbjct: 15846 tcccgccccgcctccctctg 15827
>gb|AC123811.3| Mus musculus BAC clone RP24-179L19 from chromosome 9, complete sequence Length = 204171 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ggcccctcctctacctgctc 346 |||||||||||||||||||| Sbjct: 89823 ggcccctcctctacctgctc 89842
>ref|XM_849569.1| PREDICTED: Canis familiaris hypothetical protein LOC611848 (LOC611848), mRNA Length = 2901 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tcccgccccgcctccctctg 327 |||||||||||||||||||| Sbjct: 169 tcccgccccgcctccctctg 150
>emb|X57853.1|ABTRPGDC A.brasilense trpG, trpD, trpC gene Length = 5171 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccggcggcgcgggcggcgcg 148 |||||||||||||||||||| Sbjct: 556 ccggcggcgcgggcggcgcg 575
>ref|XM_503507.1| Yarrowia lipolytica CLIB122, YALI0E03630g predicted mRNA Length = 2961 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 cccaggatctcgtcaaggag 100 |||||||||||||||||||| Sbjct: 1508 cccaggatctcgtcaaggag 1527
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccggcggcgcgggcggcgcg 148 |||||||||||||||||||| Sbjct: 4089277 ccggcggcgcgggcggcgcg 4089296
>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940141D9, complete sequence Length = 117679 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 cgcgggcggcgcgctgcggt 155 |||||||||||||||||||| Sbjct: 8849 cgcgggcggcgcgctgcggt 8868
>ref|XM_795418.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC588504 (LOC588504), mRNA Length = 1125 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 ggccgtcctccccgacgagcacgc 213 ||||||||| |||||||||||||| Sbjct: 245 ggccgtcctacccgacgagcacgc 268
>emb|AL353821.2|NC68B2 Neurospora crassa DNA linkage group V Cosmid contig 68B2 Length = 63391 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggcggcgcgggcggcgcgct 150 |||||||||||||||||||| Sbjct: 34617 ggcggcgcgggcggcgcgct 34636
>emb|AJ578458.1|SGR578458 Streptomyces griseus subsp. griseus chromomycin A3 biosynthesis gene cluster, strain ATCC13273 Length = 42074 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gctcgtcctccgcctcgcct 119 |||||||||||||||||||| Sbjct: 17051 gctcgtcctccgcctcgcct 17070
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggcggcgcgggcggcgcgct 150 |||||||||||||||||||| Sbjct: 651020 ggcggcgcgggcggcgcgct 651039
>gb|AC119400.2| Homo sapiens chromosome 19 clone LLNL19FOS-24H4, complete sequence Length = 38703 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 ccgcccggtcccgccccgcc 319 |||||||||||||||||||| Sbjct: 13988 ccgcccggtcccgccccgcc 14007
>gb|AC120118.2| Homo sapiens chromosome 19 clone RP11-1150B11, complete sequence Length = 77691 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ccgcccggtcccgccccgcc 319 |||||||||||||||||||| Sbjct: 39851 ccgcccggtcccgccccgcc 39832
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccggcggcgcgggcggcgcg 148 |||||||||||||||||||| Sbjct: 3551464 ccggcggcgcgggcggcgcg 3551483
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 tcctccgcctcgcctccgcc 124 |||||||||||||||||||| Sbjct: 1322247 tcctccgcctcgcctccgcc 1322266
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 cgcggtcgcggaggccatca 230 |||||||||||||||||||| Sbjct: 1416152 cgcggtcgcggaggccatca 1416171
>gb|AC006549.28| Homo sapiens chromosome 22 clone p215k21 map 22q11, complete sequence Length = 174840 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 ccgcccggtcccgccccgcc 319 |||||||||||||||||||| Sbjct: 10702 ccgcccggtcccgccccgcc 10721
>gb|AC000097.1| Homo sapiens Chromosome 22q11.2 PAC Clone p201m18 In DGCR Region, complete sequence Length = 162269 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 ccgcccggtcccgccccgcc 319 |||||||||||||||||||| Sbjct: 80519 ccgcccggtcccgccccgcc 80538
>gb|AC006547.9| Homo sapiens chromosome 22 clone p158l19 map 22q11, complete sequence Length = 179269 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 ccgcccggtcccgccccgcc 319 |||||||||||||||||||| Sbjct: 92747 ccgcccggtcccgccccgcc 92766
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 tcctccgcctcgcctccgcc 124 |||||||||||||||||||| Sbjct: 13930073 tcctccgcctcgcctccgcc 13930054
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 139 gggcggcgcgctgcggttcgcgcaccggctgc 170 ||||||||||||| ||||||||| ||||||| Sbjct: 4882538 gggcggcgcgctggggttcgcgcggcggctgc 4882507
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 95 aaggagctcgtcctccgcctcgcctccgccga 126 ||||||||| |||||||||||| || |||||| Sbjct: 39930994 aaggagctcctcctccgcctcgtctacgccga 39930963
>dbj|AP003451.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0413C03 Length = 162161 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 95 aaggagctcgtcctccgcctcgcctccgccga 126 ||||||||| |||||||||||| || |||||| Sbjct: 22445 aaggagctcctcctccgcctcgtctacgccga 22414
>dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete genome Length = 351911 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 gcccgccgggcgcgtgctgc 479 |||||||||||||||||||| Sbjct: 77911 gcccgccgggcgcgtgctgc 77892
>ref|XM_341160.2| PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32001 (predicted) (LOC360885), mRNA Length = 1489 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tcccgccccgcctccctctg 327 |||||||||||||||||||| Sbjct: 57 tcccgccccgcctccctctg 38
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cggcggcgcgggcggcgcgc 149 |||||||||||||||||||| Sbjct: 3335405 cggcggcgcgggcggcgcgc 3335386 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccggcggcgcgggcggcgcg 148 |||||||||||||||||||| Sbjct: 2026267 ccggcggcgcgggcggcgcg 2026248 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tcgcgcaccggctgctctcg 175 |||||||||||||||||||| Sbjct: 1223305 tcgcgcaccggctgctctcg 1223324
>dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004D12 Length = 138136 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 95 aaggagctcgtcctccgcctcgcctccgccga 126 ||||||||| |||||||||||| || |||||| Sbjct: 111702 aaggagctcctcctccgcctcgtctacgccga 111671
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccggcggcgcgggcggcgcg 148 |||||||||||||||||||| Sbjct: 861958 ccggcggcgcgggcggcgcg 861939
>emb|AL928915.24| Mouse DNA sequence from clone RP23-276J8 on chromosome 2, complete sequence Length = 145879 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 gcctccctctggcccctcct 336 |||||||||||||||||||| Sbjct: 91950 gcctccctctggcccctcct 91969
>dbj|AK106020.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-C01, full insert sequence Length = 1450 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 139 gggcggcgcgctgcggttcgcgcaccggctgc 170 ||||||||||||| ||||||||| ||||||| Sbjct: 661 gggcggcgcgctggggttcgcgcggcggctgc 692
>dbj|AK073904.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072A21, full insert sequence Length = 2226 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 95 aaggagctcgtcctccgcctcgcctccgccga 126 ||||||||| |||||||||||| || |||||| Sbjct: 423 aaggagctcctcctccgcctcgtctacgccga 454
>dbj|AK073832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067M21, full insert sequence Length = 3566 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 95 aaggagctcgtcctccgcctcgcctccgccga 126 ||||||||| |||||||||||| || |||||| Sbjct: 417 aaggagctcctcctccgcctcgtctacgccga 448
>dbj|AK071095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079N14, full insert sequence Length = 1460 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 139 gggcggcgcgctgcggttcgcgcaccggctgc 170 ||||||||||||| ||||||||| ||||||| Sbjct: 671 gggcggcgcgctggggttcgcgcggcggctgc 702
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ggcggcgcgggcggcgcgct 150 |||||||||||||||||||| Sbjct: 5258584 ggcggcgcgggcggcgcgct 5258565
>gb|AF134589.1|AF134589 Streptomyces sp. D7 vanillic acid decarboxylation gene cluster, complete sequence Length = 2961 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cggcggcgcgggcggcgcgc 149 |||||||||||||||||||| Sbjct: 638 cggcggcgcgggcggcgcgc 619
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccggcggcgcgggcggcgcg 148 |||||||||||||||||||| Sbjct: 1401947 ccggcggcgcgggcggcgcg 1401928
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ggcggcgcgggcggcgcgct 150 |||||||||||||||||||| Sbjct: 1161562 ggcggcgcgggcggcgcgct 1161543 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 444 cgcgggcgctcggcacgcccgccg 467 |||||||||||||||||| ||||| Sbjct: 723750 cgcgggcgctcggcacgctcgccg 723727
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 tcctccgcctcgcctccgcc 124 |||||||||||||||||||| Sbjct: 14012075 tcctccgcctcgcctccgcc 14012056
>gb|AC132103.3| Mus musculus BAC clone RP24-363K20 from 9, complete sequence Length = 192053 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ggcccctcctctacctgctc 346 |||||||||||||||||||| Sbjct: 10509 ggcccctcctctacctgctc 10528
>emb|AJ874112.1| Polyangium cellulosum disA gene, disB gene, disC gene, disD gene, ORF1, ORF2, ORF3, ORF4, ORF5, ORF6, ORF7, ORF8, ORF9, ORF10, ORF11, ORF12, ORF13, ORF14, ORF15, ORF16, ORF17, ORF18 and ORF19 Length = 86080 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccggcggcgcgggcggcgcg 148 |||||||||||||||||||| Sbjct: 8450 ccggcggcgcgggcggcgcg 8469
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 cccaggatctcgtcaaggag 100 |||||||||||||||||||| Sbjct: 403878 cccaggatctcgtcaaggag 403897
>gb|AD000012.1|MSGY126 Mycobacterium tuberculosis sequence from clone y126 Length = 37164 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cagccgcccgcccggctcga 50 |||||||||||||||||||| Sbjct: 19480 cagccgcccgcccggctcga 19499
>gb|U27125.1|OMU27125 Oncorhynchus mykiss natural killer enhancement factor-like protein (RBT-NKEF) mRNA, complete cds Length = 1105 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 gcaccagacccaggatctcgtcaa 96 ||||||||| |||||||||||||| Sbjct: 528 gcaccagacgcaggatctcgtcaa 505
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 139 gggcggcgcgctgcggttcgcgcaccggctgc 170 ||||||||||||| ||||||||| ||||||| Sbjct: 154946 gggcggcgcgctggggttcgcgcggcggctgc 154915
>gb|M23100.1|HUMINSR01 Human insulin receptor (INSR) gene, exon 1, clones lambda-hINSR-(1-13) Length = 2085 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ccgcccggtcccgccccgcc 319 |||||||||||||||||||| Sbjct: 1229 ccgcccggtcccgccccgcc 1210
>gb|J05043.1|HUMIRSRE Human insulin receptor (IR) gene, exon 1 Length = 2381 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ccgcccggtcccgccccgcc 319 |||||||||||||||||||| Sbjct: 1228 ccgcccggtcccgccccgcc 1209 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,418,183 Number of Sequences: 3902068 Number of extensions: 2418183 Number of successful extensions: 69004 Number of sequences better than 10.0: 90 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63015 Number of HSP's gapped (non-prelim): 5989 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
