ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl38g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... 33 0.25
2PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiestera... 30 2.2
3STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.... 28 4.8
4PAK1_MOUSE (O88643) Serine/threonine-protein kinase PAK 1 (EC 2.... 28 8.2
5PAK1_HUMAN (Q13153) Serine/threonine-protein kinase PAK 1 (EC 2.... 28 8.2
6GMIP_MOUSE (Q6PGG2) GEM-interacting protein (GMIP) 28 8.2

>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34|
           (eIF-(iso)4F p82-34)
          Length = 788

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 18/31 (58%), Positives = 18/31 (58%)
 Frame = +3

Query: 156 MTTDQPVISLXXXXXXXXXXXXXLFAPAFAV 248
           MTTDQPVISL             LFAPAFAV
Sbjct: 1   MTTDQPVISLRPGGGGGGPRGGRLFAPAFAV 31



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>PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiesterase (EC|
           3.1.4.17) (Cyclic GMP-stimulated phosphodiesterase)
           (CGS-PDE) (cGSPDE)
          Length = 941

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 11  RSQTEPNPPPREEGKKKLGFLRDFLPGAPPIPCRSSCRGALVGFGTL 151
           RSQ  P   P E   +++ FL+   P  PP PC  S + AL+  G++
Sbjct: 12  RSQQYPAARPAEPRGQQV-FLKPDEPPPPPQPCADSLQDALLSLGSV 57



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>STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.11.1) (pEg2)|
           (p46Eg265)
          Length = 407

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 5   GERSQTEPNPPPREEGKKKLGFLRDFLPGAP 97
           G   Q + +  P+EEGKKK   L DF  G P
Sbjct: 115 GSTDQGKTSAVPKEEGKKKQWCLEDFEIGRP 145



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>PAK1_MOUSE (O88643) Serine/threonine-protein kinase PAK 1 (EC 2.7.11.1)|
           (p21-activated kinase 1) (PAK-1) (P65-PAK) (Alpha-PAK)
           (CDC42/RAC effector kinase PAK-A)
          Length = 545

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 20  TEPNPPPREEGKKKLGFLRDFLPG 91
           ++P PP  EE KKK  F R  LPG
Sbjct: 38  SKPLPPNPEEKKKKDRFYRSILPG 61



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>PAK1_HUMAN (Q13153) Serine/threonine-protein kinase PAK 1 (EC 2.7.11.1)|
           (p21-activated kinase 1) (PAK-1) (P65-PAK) (Alpha-PAK)
          Length = 545

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 20  TEPNPPPREEGKKKLGFLRDFLPG 91
           ++P PP  EE KKK  F R  LPG
Sbjct: 38  SKPLPPNPEEKKKKDRFYRSILPG 61



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>GMIP_MOUSE (Q6PGG2) GEM-interacting protein (GMIP)|
          Length = 971

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 38  PREEGKKKLGFLRDFLPGAPPIPCRSSC 121
           P E G++   F+R   PGAPP P  + C
Sbjct: 342 PFEPGQRYQEFVRTLQPGAPPPPSPAFC 369


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,433,747
Number of Sequences: 219361
Number of extensions: 430439
Number of successful extensions: 1307
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 80,573,946
effective HSP length: 58
effective length of database: 67,851,008
effective search space used: 1628424192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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