ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl38f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1I2C4_MOUSE (Q8CJF8) Eukaryotic translation initiation factor 2C ... 35 0.059
2I2C4_HUMAN (Q9HCK5) Eukaryotic translation initiation factor 2C ... 35 0.059
3I2C1_MOUSE (Q8CJG1) Eukaryotic translation initiation factor 2C ... 33 0.22
4I2C1_HUMAN (Q9UL18) Eukaryotic translation initiation factor 2C ... 33 0.22
5I2C3_HUMAN (Q9H9G7) Eukaryotic translation initiation factor 2C ... 32 0.38
6I2C3_MOUSE (Q8CJF9) Eukaryotic translation initiation factor 2C ... 32 0.50
7YO43_CAEEL (P34681) Hypothetical protein ZK757.3 29 2.5
8CRTI_SYNP7 (P26294) Phytoene dehydrogenase (EC 1.14.99.-) (Phyto... 29 3.2
9Y1775_BACSK (Q5WH45) Hypothetical protein ABC1775 28 4.2

>I2C4_MOUSE (Q8CJF8) Eukaryotic translation initiation factor 2C 4 (eIF2C 4)|
           (eIF-2C 4) (Argonaute-4) (Piwi/argonaute family protein
           meIF2C4)
          Length = 861

 Score = 34.7 bits (78), Expect = 0.059
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +2

Query: 254 RPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYYVN 358
           RPG G  G PI+L+ NHF+V +   D   +HY V+
Sbjct: 18  RPGLGTVGKPIRLLANHFQVQIPKID--VYHYDVD 50



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>I2C4_HUMAN (Q9HCK5) Eukaryotic translation initiation factor 2C 4 (eIF2C 4)|
           (eIF-2C 4) (Argonaute-4)
          Length = 861

 Score = 34.7 bits (78), Expect = 0.059
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +2

Query: 254 RPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYYVN 358
           RPG G  G PI+L+ NHF+V +   D   +HY V+
Sbjct: 18  RPGLGTVGKPIRLLANHFQVQIPKID--VYHYDVD 50



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>I2C1_MOUSE (Q8CJG1) Eukaryotic translation initiation factor 2C 1 (eIF2C 1)|
           (eIF-2C 1) (Argonaute-1) (Piwi/argonaute family protein
           meIF2C1)
          Length = 857

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 254 RPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYYVN 358
           RPG G  G PI+L+ N+F+V +   D   +HY V+
Sbjct: 26  RPGIGTVGKPIKLLANYFEVDIPKID--VYHYEVD 58



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>I2C1_HUMAN (Q9UL18) Eukaryotic translation initiation factor 2C 1 (eIF2C 1)|
           (eIF-2C 1) (Argonaute-1) (Putative RNA-binding protein
           Q99)
          Length = 857

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 254 RPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYYVN 358
           RPG G  G PI+L+ N+F+V +   D   +HY V+
Sbjct: 26  RPGIGTVGKPIKLLANYFEVDIPKID--VYHYEVD 58



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>I2C3_HUMAN (Q9H9G7) Eukaryotic translation initiation factor 2C 3 (eIF2C 3)|
           (eIF-2C 3) (Argonaute-3)
          Length = 860

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 227 SKPRRALIARPGFGKRGNPIQLVTNHFKVSLKTTDEFFH 343
           ++P   +  RPG+G  G PI+L+ N F+V +   D + +
Sbjct: 11  AQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLY 49



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>I2C3_MOUSE (Q8CJF9) Eukaryotic translation initiation factor 2C 3 (eIF2C 3)|
           (eIF-2C 3) (Argonaute-3) (Piwi/argonaute family protein
           meIF2C3)
          Length = 860

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 254 RPGFGKRGNPIQLVTNHFKVSLKTTDEFFH 343
           RPG+G  G PI+L+ N F+V +   D + +
Sbjct: 20  RPGYGTMGKPIKLLANCFQVEIPKIDVYLY 49



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>YO43_CAEEL (P34681) Hypothetical protein ZK757.3|
          Length = 1040

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 239 RALIARPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYYV 355
           R ++ARPG G  G  I + +N F + LK        Y+V
Sbjct: 84  REVVARPGLGTIGRQIPVKSNFFAMDLKNPKMVVIQYHV 122



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>CRTI_SYNP7 (P26294) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene|
           desaturase)
          Length = 474

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 342 WKNSSVVFNETLK*LVTSCIGFPLLPKPGRAIRALL 235
           WK+ S++FN+  K    S   FP +P P   + A+L
Sbjct: 79  WKSHSMIFNQPTKPGTYSRFDFPDIPAPINGVAAIL 114



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>Y1775_BACSK (Q5WH45) Hypothetical protein ABC1775|
          Length = 374

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -1

Query: 137 LVGEVVAVAGHHPQQHATPFGETGNSPEEQNR*TSLESMGTEMQ 6
           L+G+++ +AG       +P+G  G +PEE  R     +M T+M+
Sbjct: 275 LLGKLLRMAGADAVLFPSPYGRIGINPEEAQRVKDQLTMTTQMK 318


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,790,674
Number of Sequences: 219361
Number of extensions: 792940
Number of successful extensions: 2213
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2213
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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