ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38f08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3111 Score = 450 bits (227), Expect = e-123 Identities = 335/371 (90%) Strand = Plus / Plus Query: 65 ccggcgccatggacaagccgtcgacgctgcttgtccacttcgacaagggctccgccgcca 124 ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 251 ccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgcca 310 Query: 125 tggtgaacgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggcca 184 ||| ||||||||||||||||| |||||||||||||| ||||||||||| || |||| Sbjct: 311 tggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtggacgcca 370 Query: 185 tgaagcgcgccgtcatgctcctcctcaatggcgagacactgcctacgctcttcatcacca 244 |||||||||||||||||||||||||||| |||||||| || || || |||||||||||| Sbjct: 371 tgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcatcaccg 430 Query: 245 tcgtccgctacgtcctcccttccgaggatcacaccattcagaagctgctgctcctctacc 304 ||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||| Sbjct: 431 tcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcctctacc 490 Query: 305 tcgagatcattgacaagcgcaacgccgccggccgcgttctcccggagatgatcctcatct 364 |||||||||| ||||||||| ||||||||||| | | |||||||||||||||||||||| Sbjct: 491 tcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcctcatct 550 Query: 365 gccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgtcacgctgc 424 |||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || | Sbjct: 551 gccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcgtcaccctcc 610 Query: 425 ggttcctctgc 435 | ||||||||| Sbjct: 611 gcttcctctgc 621
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 450 bits (227), Expect = e-123 Identities = 335/371 (90%) Strand = Plus / Minus Query: 65 ccggcgccatggacaagccgtcgacgctgcttgtccacttcgacaagggctccgccgcca 124 ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 10025973 ccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgcca 10025914 Query: 125 tggtgaacgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggcca 184 ||| ||||||||||||||||| |||||||||||||| ||||||||||| || |||| Sbjct: 10025913 tggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtggacgcca 10025854 Query: 185 tgaagcgcgccgtcatgctcctcctcaatggcgagacactgcctacgctcttcatcacca 244 |||||||||||||||||||||||||||| |||||||| || || || |||||||||||| Sbjct: 10025853 tgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcatcaccg 10025794 Query: 245 tcgtccgctacgtcctcccttccgaggatcacaccattcagaagctgctgctcctctacc 304 ||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||| Sbjct: 10025793 tcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcctctacc 10025734 Query: 305 tcgagatcattgacaagcgcaacgccgccggccgcgttctcccggagatgatcctcatct 364 |||||||||| ||||||||| ||||||||||| | | |||||||||||||||||||||| Sbjct: 10025733 tcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcctcatct 10025674 Query: 365 gccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgtcacgctgc 424 |||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || | Sbjct: 10025673 gccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcgtcaccctcc 10025614 Query: 425 ggttcctctgc 435 | ||||||||| Sbjct: 10025613 gcttcctctgc 10025603
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F09 Length = 132713 Score = 450 bits (227), Expect = e-123 Identities = 335/371 (90%) Strand = Plus / Minus Query: 65 ccggcgccatggacaagccgtcgacgctgcttgtccacttcgacaagggctccgccgcca 124 ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 106255 ccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgcca 106196 Query: 125 tggtgaacgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggcca 184 ||| ||||||||||||||||| |||||||||||||| ||||||||||| || |||| Sbjct: 106195 tggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtggacgcca 106136 Query: 185 tgaagcgcgccgtcatgctcctcctcaatggcgagacactgcctacgctcttcatcacca 244 |||||||||||||||||||||||||||| |||||||| || || || |||||||||||| Sbjct: 106135 tgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcatcaccg 106076 Query: 245 tcgtccgctacgtcctcccttccgaggatcacaccattcagaagctgctgctcctctacc 304 ||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||| Sbjct: 106075 tcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcctctacc 106016 Query: 305 tcgagatcattgacaagcgcaacgccgccggccgcgttctcccggagatgatcctcatct 364 |||||||||| ||||||||| ||||||||||| | | |||||||||||||||||||||| Sbjct: 106015 tcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcctcatct 105956 Query: 365 gccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgtcacgctgc 424 |||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || | Sbjct: 105955 gccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcgtcaccctcc 105896 Query: 425 ggttcctctgc 435 | ||||||||| Sbjct: 105895 gcttcctctgc 105885
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0036E02 Length = 145931 Score = 450 bits (227), Expect = e-123 Identities = 335/371 (90%) Strand = Plus / Minus Query: 65 ccggcgccatggacaagccgtcgacgctgcttgtccacttcgacaagggctccgccgcca 124 ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 120466 ccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgcca 120407 Query: 125 tggtgaacgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggcca 184 ||| ||||||||||||||||| |||||||||||||| ||||||||||| || |||| Sbjct: 120406 tggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtggacgcca 120347 Query: 185 tgaagcgcgccgtcatgctcctcctcaatggcgagacactgcctacgctcttcatcacca 244 |||||||||||||||||||||||||||| |||||||| || || || |||||||||||| Sbjct: 120346 tgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcatcaccg 120287 Query: 245 tcgtccgctacgtcctcccttccgaggatcacaccattcagaagctgctgctcctctacc 304 ||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||| Sbjct: 120286 tcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcctctacc 120227 Query: 305 tcgagatcattgacaagcgcaacgccgccggccgcgttctcccggagatgatcctcatct 364 |||||||||| ||||||||| ||||||||||| | | |||||||||||||||||||||| Sbjct: 120226 tcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcctcatct 120167 Query: 365 gccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgtcacgctgc 424 |||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || | Sbjct: 120166 gccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcgtcaccctcc 120107 Query: 425 ggttcctctgc 435 | ||||||||| Sbjct: 120106 gcttcctctgc 120096
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 373 bits (188), Expect = e-100 Identities = 304/342 (88%), Gaps = 3/342 (0%) Strand = Plus / Minus Query: 97 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 156 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 21405 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 21346 Query: 157 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 216 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 21345 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 21286 Query: 217 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 276 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 21285 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 21226 Query: 277 accattcagaagctgctgctcctctacctcgagatcattgacaagcgcaa---cgccgcc 333 ||||| |||||||| || |||||||||||||||||| | ||||||||| | |||| || Sbjct: 21225 accatccagaagctcctcctcctctacctcgagatcgtcgacaagcgcgacgtcgcctcc 21166 Query: 334 ggccgcgttctcccggagatgatcctcatctgccagaaccttcgcaacaacctgcagcac 393 ||| || |||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 21165 ggcaaggtactcccggagatgatcctcatctgccagaacctccgcaacaacctccagcac 21106 Query: 394 cccaacgagtacatccgcggcgtcacgctgcggttcctctgc 435 |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 21105 cccaacgagtacatccgcggggtcacgctgcgcttcctctgc 21064
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24 map S20116S, complete sequence Length = 174210 Score = 373 bits (188), Expect = e-100 Identities = 304/342 (88%), Gaps = 3/342 (0%) Strand = Plus / Minus Query: 97 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 156 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 170870 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 170811 Query: 157 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 216 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 170810 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 170751 Query: 217 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 276 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 170750 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 170691 Query: 277 accattcagaagctgctgctcctctacctcgagatcattgacaagcgcaa---cgccgcc 333 ||||| |||||||| || |||||||||||||||||| | ||||||||| | |||| || Sbjct: 170690 accatccagaagctcctcctcctctacctcgagatcgtcgacaagcgcgacgtcgcctcc 170631 Query: 334 ggccgcgttctcccggagatgatcctcatctgccagaaccttcgcaacaacctgcagcac 393 ||| || |||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 170630 ggcaaggtactcccggagatgatcctcatctgccagaacctccgcaacaacctccagcac 170571 Query: 394 cccaacgagtacatccgcggcgtcacgctgcggttcctctgc 435 |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 170570 cccaacgagtacatccgcggggtcacgctgcgcttcctctgc 170529
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 373 bits (188), Expect = e-100 Identities = 304/342 (88%), Gaps = 3/342 (0%) Strand = Plus / Minus Query: 97 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 156 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 3653733 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 3653674 Query: 157 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 216 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 3653673 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 3653614 Query: 217 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 276 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 3653613 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 3653554 Query: 277 accattcagaagctgctgctcctctacctcgagatcattgacaagcgcaa---cgccgcc 333 ||||| |||||||| || |||||||||||||||||| | ||||||||| | |||| || Sbjct: 3653553 accatccagaagctcctcctcctctacctcgagatcgtcgacaagcgcgacgtcgcctcc 3653494 Query: 334 ggccgcgttctcccggagatgatcctcatctgccagaaccttcgcaacaacctgcagcac 393 ||| || |||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 3653493 ggcaaggtactcccggagatgatcctcatctgccagaacctccgcaacaacctccagcac 3653434 Query: 394 cccaacgagtacatccgcggcgtcacgctgcggttcctctgc 435 |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 3653433 cccaacgagtacatccgcggggtcacgctgcgcttcctctgc 3653392
>dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136B14, full insert sequence Length = 1667 Score = 373 bits (188), Expect = e-100 Identities = 304/342 (88%), Gaps = 3/342 (0%) Strand = Plus / Plus Query: 97 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 156 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 102 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 161 Query: 157 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 216 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 162 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 221 Query: 217 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 276 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 222 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 281 Query: 277 accattcagaagctgctgctcctctacctcgagatcattgacaagcgcaa---cgccgcc 333 ||||| |||||||| || |||||||||||||||||| | ||||||||| | |||| || Sbjct: 282 accatccagaagctcctcctcctctacctcgagatcgtcgacaagcgcgacgtcgcctcc 341 Query: 334 ggccgcgttctcccggagatgatcctcatctgccagaaccttcgcaacaacctgcagcac 393 ||| || |||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 342 ggcaaggtactcccggagatgatcctcatctgccagaacctccgcaacaacctccagcac 401 Query: 394 cccaacgagtacatccgcggcgtcacgctgcggttcctctgc 435 |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 402 cccaacgagtacatccgcggggtcacgctgcgcttcctctgc 443
>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full insert sequence Length = 3363 Score = 373 bits (188), Expect = e-100 Identities = 304/342 (88%), Gaps = 3/342 (0%) Strand = Plus / Plus Query: 97 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 156 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 169 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 228 Query: 157 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 216 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 229 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 288 Query: 217 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 276 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 289 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 348 Query: 277 accattcagaagctgctgctcctctacctcgagatcattgacaagcgcaa---cgccgcc 333 ||||| |||||||| || |||||||||||||||||| | ||||||||| | |||| || Sbjct: 349 accatccagaagctcctcctcctctacctcgagatcgtcgacaagcgcgacgtcgcctcc 408 Query: 334 ggccgcgttctcccggagatgatcctcatctgccagaaccttcgcaacaacctgcagcac 393 ||| || |||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 409 ggcaaggtactcccggagatgatcctcatctgccagaacctccgcaacaacctccagcac 468 Query: 394 cccaacgagtacatccgcggcgtcacgctgcggttcctctgc 435 |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 469 cccaacgagtacatccgcggggtcacgctgcgcttcctctgc 510
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 373 bits (188), Expect = e-100 Identities = 304/342 (88%), Gaps = 3/342 (0%) Strand = Plus / Minus Query: 97 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 156 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 3662427 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 3662368 Query: 157 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 216 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 3662367 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 3662308 Query: 217 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 276 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 3662307 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 3662248 Query: 277 accattcagaagctgctgctcctctacctcgagatcattgacaagcgcaa---cgccgcc 333 ||||| |||||||| || |||||||||||||||||| | ||||||||| | |||| || Sbjct: 3662247 accatccagaagctcctcctcctctacctcgagatcgtcgacaagcgcgacgtcgcctcc 3662188 Query: 334 ggccgcgttctcccggagatgatcctcatctgccagaaccttcgcaacaacctgcagcac 393 ||| || |||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 3662187 ggcaaggtactcccggagatgatcctcatctgccagaacctccgcaacaacctccagcac 3662128 Query: 394 cccaacgagtacatccgcggcgtcacgctgcggttcctctgc 435 |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 3662127 cccaacgagtacatccgcggggtcacgctgcgcttcctctgc 3662086
>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full insert sequence Length = 3332 Score = 365 bits (184), Expect = 8e-98 Identities = 303/342 (88%), Gaps = 3/342 (0%) Strand = Plus / Plus Query: 97 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 156 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 138 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 197 Query: 157 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 216 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 198 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 257 Query: 217 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 276 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 258 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 317 Query: 277 accattcagaagctgctgctcctctacctcgagatcattgacaagcgcaa---cgccgcc 333 ||||| |||||||| || |||||||||||||||||| | ||||||||| | |||| || Sbjct: 318 accatccagaagctcctcctcctctacctcgagatcgtcgacaagcgcgacgtcgcctcc 377 Query: 334 ggccgcgttctcccggagatgatcctcatctgccagaaccttcgcaacaacctgcagcac 393 ||| || ||||||||||||||||||||||||| |||||| ||||||||||| |||||| Sbjct: 378 ggcaaggtactcccggagatgatcctcatctgcctgaacctccgcaacaacctccagcac 437 Query: 394 cccaacgagtacatccgcggcgtcacgctgcggttcctctgc 435 |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 438 cccaacgagtacatccgcggggtcacgctgcgcttcctctgc 479
>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full insert sequence Length = 3332 Score = 365 bits (184), Expect = 8e-98 Identities = 303/342 (88%), Gaps = 3/342 (0%) Strand = Plus / Plus Query: 97 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 156 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 138 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 197 Query: 157 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 216 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 198 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 257 Query: 217 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 276 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 258 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 317 Query: 277 accattcagaagctgctgctcctctacctcgagatcattgacaagcgcaa---cgccgcc 333 ||||| |||||||| || |||||||||||||||||| | ||||||||| | |||| || Sbjct: 318 accatccagaagctcctcctcctctacctcgagatcgtcgacaagcgcgacgtcgcctcc 377 Query: 334 ggccgcgttctcccggagatgatcctcatctgccagaaccttcgcaacaacctgcagcac 393 ||| || ||||||||||||||||||||||||| |||||| ||||||||||| |||||| Sbjct: 378 ggcaaggtactcccggagatgatcctcatctgcctgaacctccgcaacaacctccagcac 437 Query: 394 cccaacgagtacatccgcggcgtcacgctgcggttcctctgc 435 |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 438 cccaacgagtacatccgcggggtcacgctgcgcttcctctgc 479
>dbj|AB080596.1| Botryococcus braunii bCOP mRNA for coatomer subunit beta, complete cds Length = 3313 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Plus Query: 349 gagatgatcctcatctgccagaaccttcgcaacaacctgcagcaccccaacgagtacatc 408 |||||||| || || ||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 484 gagatgattctgatttgccagaacctgcgcaacaacctgcagcacccgaacgagtacatc 543 Query: 409 cgcggcgtcacgctgcggttcct 431 || || ||||||||||| ||||| Sbjct: 544 cggggggtcacgctgcgcttcct 566
>ref|XM_323756.1| Neurospora crassa OR74A hypothetical protein (NCU04404.1) partial mRNA Length = 2874 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Plus Query: 386 tgcagcaccccaacgagtacatccgcggcgtcacgctgcggttcct 431 |||| ||||| |||||||||||||| ||| ||||||||| ||||| Sbjct: 323 tgcaacacccgaacgagtacatccgaggcaacacgctgcgcttcct 368
>ref|XM_952388.1| Neurospora crassa OR74A hypothetical protein (NCU04404.1) partial mRNA Length = 2874 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Plus Query: 386 tgcagcaccccaacgagtacatccgcggcgtcacgctgcggttcct 431 |||| ||||| |||||||||||||| ||| ||||||||| ||||| Sbjct: 323 tgcaacacccgaacgagtacatccgaggcaacacgctgcgcttcct 368
>ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 104 tcgacaagggctccgccgccat 125 |||||||||||||||||||||| Sbjct: 2162 tcgacaagggctccgccgccat 2183
>ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 104 tcgacaagggctccgccgccat 125 |||||||||||||||||||||| Sbjct: 2162 tcgacaagggctccgccgccat 2183
>ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM03361.1) partial mRNA Length = 2949 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 386 tgcagcaccccaacgagtacat 407 |||||||||||||||||||||| Sbjct: 332 tgcagcaccccaacgagtacat 353
>emb|X80052.1|NCFOX2 N.crassa fox-2 gene Length = 3401 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 104 tcgacaagggctccgccgccat 125 |||||||||||||||||||||| Sbjct: 2665 tcgacaagggctccgccgccat 2686
>emb|BX908809.1| Neurospora crassa DNA linkage group IV Cosmid contig 29E8 Length = 197698 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Plus Query: 386 tgcagcaccccaacgagtacatccgcggcgtcacgctgcggttcct 431 |||| ||||| |||||||||||||| ||| ||||||||| ||||| Sbjct: 18647 tgcaacacccgaacgagtacatccgaggcaacacgctgcgcttcct 18692
>ref|XM_544073.2| PREDICTED: Canis familiaris similar to CG12002-PA, isoform A (LOC486944), mRNA Length = 3891 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 377 gcaacaacctgcagcacccca 397 ||||||||||||||||||||| Sbjct: 1685 gcaacaacctgcagcacccca 1705
>ref|XM_505605.1| Yarrowia lipolytica CLIB122, YALI0F19074g predicted mRNA Length = 2859 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 383 acctgcagcaccccaacgagtacat 407 ||||||||||||| ||||||||||| Sbjct: 314 acctgcagcaccctaacgagtacat 338
>emb|AL049749.2|HS293L6 Human DNA sequence from clone RP1-293L6 on chromosome 22 Contains the first exon of the CACNG2 gene for voltage-dependent calcium channel gamma subunit 2, ESTs, STSs, GSSs and a putative CpG island, complete sequence Length = 99497 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 gatcctcatctgccagaacct 374 ||||||||||||||||||||| Sbjct: 35204 gatcctcatctgccagaacct 35224
>gb|AE005990.1| Caulobacter crescentus CB15 section 316 of 359 of the complete genome Length = 10324 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 143 cggatctggagggcagcgacgtcgccgcc 171 |||||||| ||||| |||||||||||||| Sbjct: 542 cggatctgcagggcggcgacgtcgccgcc 514 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 ctggagggcagcgacgtcgccgcc 171 ||||||||| |||||||||||||| Sbjct: 508 ctggagggcggcgacgtcgccgcc 531
>ref|XM_693623.1| PREDICTED: Danio rerio similar to CG12002-PA, isoform A (LOC570177), mRNA Length = 2301 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 377 gcaacaacctgcagcacccca 397 ||||||||||||||||||||| Sbjct: 146 gcaacaacctgcagcacccca 166
>ref|XM_571941.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 2933 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 385 ctgcagcaccccaacgagtacatccgcgg 413 ||||| || |||||||||||||||||||| Sbjct: 322 ctgcaacatcccaacgagtacatccgcgg 350
>emb|BX649351.10| Zebrafish DNA sequence from clone CH211-168F19 in linkage group 4, complete sequence Length = 144569 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 286 aagctgctgctcctctacctcgaga 310 |||||||||||||||||| |||||| Sbjct: 106154 aagctgctgctcctctacatcgaga 106130
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 tcgccgccaaggtcgaggcca 184 ||||||||||||||||||||| Sbjct: 4038174 tcgccgccaaggtcgaggcca 4038194
>emb|BX284660.1| Human DNA sequence from clone RP1-293L6 on chromosome 22, complete sequence Length = 70881 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 gatcctcatctgccagaacct 374 ||||||||||||||||||||| Sbjct: 62829 gatcctcatctgccagaacct 62809
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 383 acctgcagcaccccaacgagtacat 407 ||||||||||||| ||||||||||| Sbjct: 2553906 acctgcagcaccctaacgagtacat 2553882
>ref|NM_119297.2| Arabidopsis thaliana clathrin binding AT4G31480 mRNA, complete cds Length = 3296 Score = 40.1 bits (20), Expect = 5.8 Identities = 59/72 (81%) Strand = Plus / Plus Query: 364 tgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgtcacgctg 423 |||||||| ||||| || ||||| ||||| || || ||||||||||| || || || ||| Sbjct: 361 tgccagaatcttcgtaataaccttcagcatcctaatgagtacatccgtggagtgacactg 420 Query: 424 cggttcctctgc 435 |||| |||||| Sbjct: 421 aggtttctctgc 432
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 caagcgcaacgccgccggcc 337 |||||||||||||||||||| Sbjct: 3200120 caagcgcaacgccgccggcc 3200101
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 cccaacgagtacatccgcgg 413 |||||||||||||||||||| Sbjct: 773058 cccaacgagtacatccgcgg 773039
>gb|AY372423.1| Medicago truncatula B gene, partial sequence Length = 6574 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 acaacctgcagcaccccaacgagt 403 |||| ||||||||||||||||||| Sbjct: 935 acaaactgcagcaccccaacgagt 912
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 gccgccaaggtcgaggccat 185 |||||||||||||||||||| Sbjct: 2893165 gccgccaaggtcgaggccat 2893146
>emb|CR925828.3| Zebrafish DNA sequence from clone DKEY-156K7 in linkage group 16, complete sequence Length = 188634 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 287 agctgctgctcctctacctcgaga 310 ||||||||||||||||| |||||| Sbjct: 147809 agctgctgctcctctacatcgaga 147832
>emb|CR936945.2| Medicago truncatula chromosome 5 clone mte1-67e6, COMPLETE SEQUENCE Length = 127675 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 380 acaacctgcagcaccccaacgagt 403 |||| ||||||||||||||||||| Sbjct: 42307 acaaactgcagcaccccaacgagt 42330
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 114 ctccgccgccatggtgaacgagatcaag 141 ||||||| |||||| ||||||||||||| Sbjct: 267914 ctccgccaccatggagaacgagatcaag 267941
>emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BAC clone F3L17 (ESSA project) Length = 94319 Score = 40.1 bits (20), Expect = 5.8 Identities = 59/72 (81%) Strand = Plus / Plus Query: 364 tgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgtcacgctg 423 |||||||| ||||| || ||||| ||||| || || ||||||||||| || || || ||| Sbjct: 42315 tgccagaatcttcgtaataaccttcagcatcctaatgagtacatccgtggagtgacactg 42374 Query: 424 cggttcctctgc 435 |||| |||||| Sbjct: 42375 aggtttctctgc 42386
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75 Length = 196242 Score = 40.1 bits (20), Expect = 5.8 Identities = 59/72 (81%) Strand = Plus / Plus Query: 364 tgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgtcacgctg 423 |||||||| ||||| || ||||| ||||| || || ||||||||||| || || || ||| Sbjct: 30380 tgccagaatcttcgtaataaccttcagcatcctaatgagtacatccgtggagtgacactg 30439 Query: 424 cggttcctctgc 435 |||| |||||| Sbjct: 30440 aggtttctctgc 30451
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ccaaggtcgaggccatgaag 189 |||||||||||||||||||| Sbjct: 1720007 ccaaggtcgaggccatgaag 1720026 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ccaaggtcgaggccatgaag 189 |||||||||||||||||||| Sbjct: 728522 ccaaggtcgaggccatgaag 728541
>gb|AE005768.1| Caulobacter crescentus CB15 section 94 of 359 of the complete genome Length = 11751 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 ccaaccaccatcaacccacccgcc 66 ||||||| |||||||||||||||| Sbjct: 9838 ccaaccagcatcaacccacccgcc 9861
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 gatcaaggcggatctggagg 154 |||||||||||||||||||| Sbjct: 1763887 gatcaaggcggatctggagg 1763868
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 gccatggtgaacgagatcaaggcg 144 |||||| ||||||||||||||||| Sbjct: 2448595 gccatgatgaacgagatcaaggcg 2448618
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 cgtcgccgccaaggtcgagg 181 |||||||||||||||||||| Sbjct: 4994308 cgtcgccgccaaggtcgagg 4994327
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 cctcctcaatggcgagacactgcc 227 |||||||||||||||||| ||||| Sbjct: 7448022 cctcctcaatggcgagactctgcc 7448045
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ccaaggtcgaggccatgaag 189 |||||||||||||||||||| Sbjct: 759001 ccaaggtcgaggccatgaag 759020
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 gcgacgtcgccgccaaggtc 177 |||||||||||||||||||| Sbjct: 1266036 gcgacgtcgccgccaaggtc 1266017
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.8 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 322 cgcaacgccgccggccgcgttctcccgg 349 ||||||||||| |||||||||||||||| Sbjct: 1217539 cgcaacgccgc-ggccgcgttctcccgg 1217565
>gb|AC157784.2| Mus musculus chromosome 18, clone RP24-163C18, complete sequence Length = 182283 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ccagatccactctgcccagg 36 |||||||||||||||||||| Sbjct: 122525 ccagatccactctgcccagg 122506 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,038,376 Number of Sequences: 3902068 Number of extensions: 3038376 Number of successful extensions: 66409 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 65225 Number of HSP's gapped (non-prelim): 1177 length of query: 435 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 413 effective length of database: 17,147,199,772 effective search space: 7081793505836 effective search space used: 7081793505836 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
