ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38f06 |
|---|---|
| Clone Library Name | barley_pub |
>TBCD_HUMAN (Q9BTW9) Tubulin-specific chaperone D (Tubulin-folding cofactor D)| (Beta-tubulin cofactor D) (tfcD) (SSD-1) Length = 1192 Score = 41.6 bits (96), Expect = 9e-04 Identities = 20/49 (40%), Positives = 31/49 (63%) Frame = +3 Query: 249 RIVAAGGVAEPADVHRIRSIMDKYQEEGQLLEPYLEDIISPLMSLVRSK 395 R V GG + R R IMDKYQE+ LL+P+LE +++ L+ +V+ + Sbjct: 44 REVHGGGAEREVALERFRVIMDKYQEQPHLLDPHLEWMMNLLLDIVQDQ 92
>TBCD_BOVIN (Q28205) Tubulin-specific chaperone D (Tubulin-folding cofactor D)| (Beta-tubulin cofactor D) Length = 1199 Score = 39.7 bits (91), Expect = 0.003 Identities = 20/47 (42%), Positives = 30/47 (63%) Frame = +3 Query: 255 VAAGGVAEPADVHRIRSIMDKYQEEGQLLEPYLEDIISPLMSLVRSK 395 V A A + R R IMDKYQE+ LL+P+LE +++ L+ V++K Sbjct: 54 VLADRSAREGALERFRVIMDKYQEQPHLLDPHLEWMLNLLLEFVQNK 100
>TBCD_MOUSE (Q8BYA0) Tubulin-specific chaperone D (Tubulin-folding cofactor D)| (Beta-tubulin cofactor D) Length = 1196 Score = 38.5 bits (88), Expect = 0.007 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Frame = +3 Query: 237 AILRRIVAAGGVAEPADV--HRIRSIMDKYQEEGQLLEPYLEDIISPLMSLVRSK 395 A+LR + A +V R R IMDKYQE+ LL+P+LE +++ L+ LV+ + Sbjct: 38 ALLRSLPAVHRERASREVAEERFRVIMDKYQEQPHLLDPHLEWMMNSLLDLVQDE 92
>TBCD_CHICK (Q5ZI87) Tubulin-specific chaperone D (Tubulin-folding cofactor D)| (Beta-tubulin cofactor D) Length = 1019 Score = 35.0 bits (79), Expect = 0.081 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +3 Query: 249 RIVAAGGVAEPADVHRIRSIMDKYQEEGQLLEPYLEDIISPLMSLVR 389 R V VA+ V + IMDKYQE+ LL+ +LE +++ L+ ++R Sbjct: 45 RTVYGDPVAQEVIVEKFIVIMDKYQEQPHLLDRHLEWMMNMLLDIIR 91
>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)| Length = 1601 Score = 34.7 bits (78), Expect = 0.11 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Frame = +1 Query: 13 AVSGTLASRSHLSTPPP----PFPQRLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCT 180 AV G LA++ L PPP P PQ L +S +T PQ +P+V PPP S T Sbjct: 1173 AVPGHLAAK--LPPPPPSKAIPSPQHL---VSRMTPPQ-----LPKVATPPPPSSPRVIT 1222 Query: 181 TPRRS 195 P+ S Sbjct: 1223 PPKTS 1227
>VP5_BRD (P21230) Outer capsid protein VP5| Length = 480 Score = 33.5 bits (75), Expect = 0.24 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +1 Query: 64 PFPQRLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCTTPRRSSC 201 P P LSP L+ LT + G PRV+++ P +SA T P C Sbjct: 435 PAPISLSPLLAILTQRGCIGPGWPRVLMIRPCISALYRTRPPTRRC 480
>HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) Length = 889 Score = 32.0 bits (71), Expect = 0.68 Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 13/66 (19%) Frame = +1 Query: 28 LASRSHLSTPPPPFPQ------RLSPCLSHLTSPQA-------LALGMPRVVLLPPPLSA 168 L R L PPPP PQ L + PQ LALG PR+V PPP A Sbjct: 707 LGQRVGLFPPPPPPPQVTSAIATLQQAAAMSFCPQVARPLVGPLALGSPRLVRRPPPGPA 766 Query: 169 TTCTTP 186 +P Sbjct: 767 PAAASP 772
>CMTA2_MOUSE (Q80Y50) Calmodulin-binding transcription activator 2| Length = 1208 Score = 32.0 bits (71), Expect = 0.68 Identities = 24/66 (36%), Positives = 27/66 (40%) Frame = +1 Query: 7 DGAVSGTLASRSHLSTPPPPFPQRLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCTTP 186 DG S T A S PPP P L+ +S P L+ G P LL AT P Sbjct: 854 DGTFSVTSAYSSAPDGSPPPAPP-LASDISMEMIPGQLSCGAPETPLLLMDYEATNSKEP 912 Query: 187 RRSSCG 204 S CG Sbjct: 913 APSPCG 918
>UL49_EHV1B (P28960) Tegument protein (Gene 11 protein)| Length = 304 Score = 31.2 bits (69), Expect = 1.2 Identities = 17/42 (40%), Positives = 20/42 (47%) Frame = +1 Query: 76 RLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCTTPRRSSC 201 R SP + A A PRV PP +A T TTPR+ C Sbjct: 117 RQSPAKAQPPPRGAAAAPPPRVPTRPPTRAAATSTTPRQQDC 158
>DNMBP_MOUSE (Q6TXD4) Dynamin-binding protein (Scaffold protein Tuba)| Length = 1580 Score = 30.8 bits (68), Expect = 1.5 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 7/56 (12%) Frame = +1 Query: 55 PPPPFPQRLSPCLSHLTSPQA------LALGMPRVVLLPPPLSATTCT-TPRRSSC 201 PPPP P+ +P SHL Q+ L + R LPPP T +P+ +SC Sbjct: 609 PPPPRPRTPTPISSHLLVDQSPKPVPTLVVRPSRPAPLPPPAQQRMNTASPKPTSC 664
>PEX6_PENCH (Q9HG03) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1459 Score = 30.8 bits (68), Expect = 1.5 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +1 Query: 61 PPFPQRLSPCLSHLTSPQALALGMPRVVLL 150 PP QR+ +S TSP+A+ LGM V +L Sbjct: 762 PPLQQRIRDLMSAATSPRAIQLGMKPVFIL 791
>FBSH_MOUSE (Q8R089) Probable fibrosin-1 long transcript protein| Length = 378 Score = 30.0 bits (66), Expect = 2.6 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = +1 Query: 40 SHLSTPPPPFPQRLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCTTPRRS 195 S L+ PPPP +P L T P AL P +V P P S P R+ Sbjct: 325 SRLAPPPPPTATPGTPHLLSKTPPGALLGAPPPLVPAPRPSSPPRAPGPARA 376
>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch 4)| [Contains: Transforming protein Int-3; Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 1964 Score = 30.0 bits (66), Expect = 2.6 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Frame = +1 Query: 46 LSTPPPPFPQRLSPCLSHLTSPQALALGMPRV-VLLPPPLSATTCTTPRRSSCGG 207 L+ P PP SPCL + T + LG P PP C P S C G Sbjct: 1122 LTPPAPPGCGPPSPCLHNGTCTETPGLGNPGFQCTCPPDSPGPRCQRPGASGCEG 1176
>Y2191_MYCTU (Q10384) Hypothetical protein Rv2191/MT2247| Length = 645 Score = 30.0 bits (66), Expect = 2.6 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 4/76 (5%) Frame = -2 Query: 250 RRRMAETSSHSWRKYRRRTTSLESCTSSQTAAAAVGP----LEASPAPVPADWSGVTGME 83 R + AET++ R T L +CT+ T +A GP LE S P D VT + Sbjct: 365 RSKAAETAA-----LLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARD---VTAAQ 416 Query: 82 TVSVGMAAAEWTGGCD 35 + AA GG D Sbjct: 417 YAEAVLRAAALIGGLD 432
>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1| Length = 574 Score = 29.6 bits (65), Expect = 3.4 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Frame = +1 Query: 28 LASRSHLSTPPPPFPQRLSPCLSHL---TSPQALALGMPRVVLLPP 156 L + S STPP P P L P ++P +L +G P LPP Sbjct: 406 LGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
>RF1_BACHD (Q9K6F4) Peptide chain release factor 1 (RF-1)| Length = 356 Score = 29.6 bits (65), Expect = 3.4 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Frame = +3 Query: 276 EPADVHR-IRSIMDKYQEEGQLLEPYLEDIISPLMSLVRSKIMELGAATDEL 428 E V+R +++MD+YQ+ ++LE L+D + ++V+ +I EL ++L Sbjct: 43 ETVQVYREYKTVMDQYQDAKEMLEDKLDD---EMYAMVKEEIDELATRKEDL 91
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3| Length = 1333 Score = 29.3 bits (64), Expect = 4.4 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 279 PADVHRIRSIMDKYQEEGQLLEPYLE 356 P D R+I+ KY EEG+L+ P +E Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIE 931
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2| Length = 1333 Score = 29.3 bits (64), Expect = 4.4 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 279 PADVHRIRSIMDKYQEEGQLLEPYLE 356 P D R+I+ KY EEG+L+ P +E Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIE 931
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1| Length = 1333 Score = 29.3 bits (64), Expect = 4.4 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 279 PADVHRIRSIMDKYQEEGQLLEPYLE 356 P D R+I+ KY EEG+L+ P +E Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIE 931
>TCRG1_MOUSE (Q8CGF7) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) (p144) (Formin-binding protein 28) (FBP 28) Length = 1100 Score = 29.3 bits (64), Expect = 4.4 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = +1 Query: 13 AVSGTLASRSHLSTPPPPFPQRLSPCLSHLTSPQALALGMPRVVLLPP 156 +VS + + + T P P PQ L P + H A A+ V++PP Sbjct: 320 SVSAPAPTATPVQTVPQPHPQTLPPAVPHSVPQPAAAIPAFPPVMVPP 367
>EGR2_XENLA (Q08427) Early growth response protein 2 (EGR-2) (Krox-20 protein)| Length = 421 Score = 29.3 bits (64), Expect = 4.4 Identities = 19/57 (33%), Positives = 24/57 (42%) Frame = +1 Query: 43 HLSTPPPPFPQRLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCTTPRRSSCGGTF 213 H+ +PPP S C P G P LPPP S +P+ +S GG F Sbjct: 155 HIYSPPP-----YSSCNEIYQDPLRFPCGSPTAASLPPPPS---YPSPKGASDGGMF 203
>TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain-binding protein 7)| (Fragment) Length = 290 Score = 29.3 bits (64), Expect = 4.4 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Frame = +1 Query: 46 LSTPP--PPFPQRLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCTTPRR 192 L +PP PP P P TSP A +P V PPPLS P + Sbjct: 38 LPSPPLTPPVPSPPPPLPPPSTSPPPPASPLPPPVSPPPPLSPPPYPAPEK 88
>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 28.9 bits (63), Expect = 5.8 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 7/58 (12%) Frame = +1 Query: 34 SRSHLSTPPPPFPQRLS-------PCLSHLTSPQALALGMPRVVLLPPPLSATTCTTP 186 SR+ + PPPP P R P + P AL P PPPLS T P Sbjct: 312 SRAPTAAPPPPPPSRPGVVVPPPPPNRMYPPPPPALPSSAPSGPPPPPPLSMAGSTAP 369
>CRIP3_HUMAN (Q6Q6R5) Cysteine-rich protein 3 (CRP3) (Chromosome 6 LIM-only| protein) (h6LIMo) Length = 217 Score = 28.9 bits (63), Expect = 5.8 Identities = 17/55 (30%), Positives = 22/55 (40%) Frame = +1 Query: 40 SHLSTPPPPFPQRLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCTTPRRSSCG 204 S+L PP P P +P SP G+P+ PP + T T CG Sbjct: 74 SYLYNPPTPSPGCTTPLSPSSFSPPRPRTGLPQGKKSPPHMKTFTGETSLCPGCG 128
>CI082_HUMAN (Q9H8G2) Protein C9orf82| Length = 361 Score = 28.9 bits (63), Expect = 5.8 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = -1 Query: 173 VVADSGGGSRTTRGIPSASACGLVRCDRHGD---SLCGNGGGG 54 V A + G S +T G SA CG V C + + S+ G G GG Sbjct: 29 VPALASGSSGSTSGCGSAGGCGSVSCCGNANFSGSVTGGGSGG 71
>DS_DROME (Q24292) Protein dachsous precursor (Adherin)| Length = 3503 Score = 28.9 bits (63), Expect = 5.8 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 3/75 (4%) Frame = +1 Query: 1 KHDGAVSGTLASRSHLSTPPPPFPQRLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCT 180 KH + S A L PP P + P L +P+A+ L M LPP LS Sbjct: 3375 KHSSSHSSAGAGSVVLKPPPSAPPTHIPPPLLTNVAPRAINLPM----RLPPHLSLAPAH 3430 Query: 181 TPRR---SSCGGTFS 216 PR G+FS Sbjct: 3431 LPRSPIGHEASGSFS 3445
>GLXK1_ECOLI (P77364) Glycerate kinase 1 (EC 2.7.1.31)| Length = 381 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = -1 Query: 176 HVVADSGGGSRTTRGIPSASACGLVRCDRHGDSLCGNGG 60 H++ GG + G+ A A G+ D G +L NGG Sbjct: 128 HIILGIGGSATVDGGMGMAQALGVRFLDADGQALAANGG 166
>YBAD_SHIFL (O51824) UPF0168 protein ybaD| Length = 149 Score = 28.9 bits (63), Expect = 5.8 Identities = 15/57 (26%), Positives = 32/57 (56%) Frame = +3 Query: 222 WELVSAILRRIVAAGGVAEPADVHRIRSIMDKYQEEGQLLEPYLEDIISPLMSLVRS 392 +E+ ++ R+V + V EP + ++RS M + E+ + Y+E I+ + S +R+ Sbjct: 41 FEVAELVMPRVVKSNDVREPFNEEKLRSGMLRALEKRPVSSDYVEMAINHIKSQLRA 97
>RANB9_HUMAN (Q96S59) Ran-binding protein 9 (RanBP9) (RanBP7) (Ran-binding| protein M) (RanBPM) (BPM90) (BPM-L) Length = 729 Score = 28.9 bits (63), Expect = 5.8 Identities = 17/54 (31%), Positives = 25/54 (46%) Frame = +1 Query: 46 LSTPPPPFPQRLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCTTPRRSSCGG 207 +S PPP P + L+ P AL V+LP P + + ++P S GG Sbjct: 1 MSGQPPPPPPQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPGGG 54
>INADL_MOUSE (Q63ZW7) InaD-like protein (Inadl protein) (Pals1-associated tight| junction protein) (Protein associated to tight junctions) (Channel-interacting PDZ domain-containing protein) Length = 1834 Score = 28.9 bits (63), Expect = 5.8 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Frame = +3 Query: 264 GGVAEPAD-VHRIRSIMDKYQEEGQLLEPYLEDII-SPLMSLVRS 392 G +EPAD VH I S + +G EPYLE+++ P + L +S Sbjct: 792 GDSSEPADAVHEIHSSLILEAPQGFRDEPYLEELVDEPFLDLGKS 836
>HXA5_MORSA (Q9PWD3) Homeobox protein Hox-A5| Length = 281 Score = 28.9 bits (63), Expect = 5.8 Identities = 21/68 (30%), Positives = 26/68 (38%) Frame = +1 Query: 19 SGTLASRSHLSTPPPPFPQRLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCTTPRRSS 198 S S LS PP P P S +T Q+ + + P C+TP SS Sbjct: 93 SANSTGTSSLSPPPDPLPCSSVASSSPVTETQSQHRAVKNSITTP-------CSTPCSSS 145 Query: 199 CGGTFSRN 222 GGT N Sbjct: 146 NGGTLLLN 153
>FBSH_HUMAN (Q9HAH7) Probable fibrosin-1 long transcript protein| Length = 372 Score = 28.9 bits (63), Expect = 5.8 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = +1 Query: 40 SHLSTPPPPFPQRLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCTTPRRS 195 S L+ PPPP +P L T P AL P +V P P S P R+ Sbjct: 319 SRLAPPPPPAAAPGTPHLLSKTPPGALLGAPPPLVPAPRPSSPPRGPGPARA 370
>CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2| Length = 1202 Score = 28.5 bits (62), Expect = 7.6 Identities = 21/63 (33%), Positives = 24/63 (38%) Frame = +1 Query: 7 DGAVSGTLASRSHLSTPPPPFPQRLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCTTP 186 DG S T A S PPP P S +P L+ G+P LL AT P Sbjct: 847 DGTFSVTSAYSSAPDGSPPPAPLPASEMTMEDMAPGQLSSGVPEAPLLLMDYEATNSKGP 906 Query: 187 RRS 195 S Sbjct: 907 LSS 909
>LOXL4_HUMAN (Q96JB6) Lysyl oxidase homolog 4 precursor (EC 1.4.3.-) (Lysyl| oxidase-like protein 4) (Lysyl oxidase-related protein C) Length = 756 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -1 Query: 125 SASACGLVRCDRHGDSLCGNGGGGVDRWLRLASVPETAP 9 S + L +C RHG C +GGG R+L S ++AP Sbjct: 498 SGTELALQQCQRHGPVHCSHGGG---RFLAGVSCMDSAP 533
>EUTL_SALTY (P0A1C9) Ethanolamine utilization protein eutL| Length = 219 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +1 Query: 94 SHLTSPQALALGMPRVVLLPPPLSAT 171 S+L+S +ALG P L+ PPL AT Sbjct: 134 SYLSSTAGIALGDPMAYLVAPPLEAT 159
>EUTL_SALTI (P0A1D0) Ethanolamine utilization protein eutL| Length = 219 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +1 Query: 94 SHLTSPQALALGMPRVVLLPPPLSAT 171 S+L+S +ALG P L+ PPL AT Sbjct: 134 SYLSSTAGIALGDPMAYLVAPPLEAT 159
>3BP2_MOUSE (Q06649) SH3 domain-binding protein 2 (3BP-2)| Length = 559 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = +1 Query: 55 PPPPFPQRLSPCLSHLTSPQALALGMPRVVLLPPP 159 PPPP P P S L + P +L PPP Sbjct: 205 PPPPVPVPRKPAFSDLPRAHSFTSKSPSPLLPPPP 239
>CENPB_MOUSE (P27790) Major centromere autoantigen B (Centromere protein B)| (CENP-B) Length = 599 Score = 28.5 bits (62), Expect = 7.6 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%) Frame = -2 Query: 232 TSSHSWRKYRRRTTSLESCTS-----SQTAAAAVGPLEASPAPVPADWSG 98 T+S+ W RR + +C+ ++T+A P A PA VP++ SG Sbjct: 117 TASNGWLDRFRRRHGVVACSGVTRSRARTSAPRPQPAPAGPATVPSEGSG 166
>EXT3_DROME (Q9XZ08) Exostosin-3 (EC 2.4.1.223) (Protein brother of tout-velu)| Length = 972 Score = 28.5 bits (62), Expect = 7.6 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Frame = +3 Query: 228 LVSAILRRIVAAGGVAEPADVHRIRSIMDKYQEEGQL----LEPYLEDIISPLMSLVRSK 395 LVS + RI++ A P D+HR ++D Y++ + L+ +E+++ + S V + Sbjct: 66 LVSCLAYRILSVEQDAPPLDLHRSSPLLDAYEDFSAMRAGDLKMRIEEMVR-IKSTVSVE 124 Query: 396 IMELGAATDEL 428 + EL + +L Sbjct: 125 LRELESRRQKL 135
>SBCD_RHOCA (O68033) Exonuclease sbcD homolog| Length = 405 Score = 28.5 bits (62), Expect = 7.6 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +1 Query: 10 GAVSGTLASRSHLSTPPPPFPQRLSP-CLSHLTSPQALALGMPRVVLLPPPLSAT 171 GA L H + PP FP L+ L HL PQ+L G R P PLSA+ Sbjct: 203 GAERRILIGGDH-AVPPDVFPPALAHVALGHLHRPQSLDGGRVRYSGAPFPLSAS 256
>NEO1_MOUSE (P97798) Neogenin precursor| Length = 1493 Score = 28.5 bits (62), Expect = 7.6 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Frame = +1 Query: 19 SGTLAS--RSHLSTPPPPFPQRLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCT 180 S +LAS RSHL P P+P S LS + P +P S T CT Sbjct: 1298 SSSLASPARSHLYHPSSPWPIGTSMSLSDRANSTESVRNTPSTDTMPASSSQTCCT 1353
>KTNB1_STRPU (O61585) Katanin p80 WD40-containing subunit B1 (Katanin p80| subunit B1) (p80 katanin) Length = 690 Score = 28.1 bits (61), Expect = 9.9 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -2 Query: 160 AAAAVGPLEASPAPVPADW 104 AAAAV P+ +PAP +DW Sbjct: 428 AAAAVAPVSRAPAPSASDW 446
>ETV2_HUMAN (O00321) ETS translocation variant 2 (Ets-related protein 71)| Length = 341 Score = 28.1 bits (61), Expect = 9.9 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Frame = -2 Query: 160 AAAAVGPLEASPAPVPADWS-GVTGMETVSVGMAAAEWT 47 A+ +GP P P+PA S G G V V A W+ Sbjct: 104 ASQTLGPAPLGPGPIPAAGSEGAAGQNCVPVAGEATSWS 142
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -1 Query: 185 GVVHVVADSGGGSRTTRGIPSASACGLVRCDRHGDSLCGNGGGGV 51 G + A +G R +P + LV GD L G+GGGGV Sbjct: 1497 GALSGAAPAGLSLRGRPAVPGEAESVLVLLGAAGDGLDGDGGGGV 1541
>IMB3_SCHPO (O74476) Importin beta-3 subunit| Length = 1095 Score = 28.1 bits (61), Expect = 9.9 Identities = 10/24 (41%), Positives = 20/24 (83%) Frame = +3 Query: 321 QEEGQLLEPYLEDIISPLMSLVRS 392 + + ++LEPYL+DI+ L++L++S Sbjct: 484 EADNKVLEPYLDDILQRLLTLLQS 507
>SOCS1_HUMAN (O15524) Suppressor of cytokine signaling 1 (SOCS-1) (JAK-binding| protein) (JAB) (STAT-induced STAT inhibitor 1) (SSI-1) (Tec-interacting protein 3) (TIP-3) Length = 211 Score = 28.1 bits (61), Expect = 9.9 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = -2 Query: 205 RRRTTSLESCTSSQTAAAAVGPLEASPAPVPAD 107 RRR S +SS A A P A PAP P D Sbjct: 20 RRRPEPSSSSSSSPAAPARPRPCPAVPAPAPGD 52
>SCNAA_MOUSE (Q61180) Amiloride-sensitive sodium channel alpha-subunit| (Epithelial Na+ channel alpha subunit) (Alpha ENaC) (Nonvoltage-gated sodium channel 1 alpha subunit) (SCNEA) (Alpha NaCH) Length = 699 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/53 (32%), Positives = 21/53 (39%) Frame = +1 Query: 43 HLSTPPPPFPQRLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCTTPRRSSC 201 H ++PPP PQ+ T P AL P L P S P S+C Sbjct: 647 HPTSPPPSLPQQ------GTTPPLALTAPPPAYATLGPSASPLDSAVPGSSAC 693
>CENPB_HUMAN (P07199) Major centromere autoantigen B (Centromere protein B)| (CENP-B) Length = 599 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Frame = -2 Query: 232 TSSHSWRKYRRRTTSLESCTS-----SQTAAAAVGPLEASPAPVPADWSG 98 T+S+ W RR + SC+ ++ AA ASPA VP++ SG Sbjct: 117 TASNGWLDRFRRRHGVVSCSGVARARARNAAPRTPAAPASPAAVPSEGSG 166
>PHX2A_MOUSE (Q62066) Paired mesoderm homeobox protein 2A (Paired-like homeobox| 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog) Length = 280 Score = 28.1 bits (61), Expect = 9.9 Identities = 15/30 (50%), Positives = 15/30 (50%) Frame = +1 Query: 40 SHLSTPPPPFPQRLSPCLSHLTSPQALALG 129 S S PPPP P SP LS P AL G Sbjct: 188 STASLPPPPAPSLASPRLSPSPLPAALGSG 217
>ROBO4_HUMAN (Q8WZ75) Roundabout homolog 4 precursor (Magic roundabout)| Length = 1007 Score = 28.1 bits (61), Expect = 9.9 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 8/68 (11%) Frame = +1 Query: 28 LASRSHLST----PPPPFPQRLSPCLSHLTSPQALALGMPRVVLLP----PPLSATTCTT 183 L+S + L T P P FP P S T P +A P +LLP P LS + + Sbjct: 703 LSSSNELVTRHLPPAPLFPHETPPTQSQQTQP-PVAPQAPSSILLPAAPIPILSPCSPPS 761 Query: 184 PRRSSCGG 207 P+ SS G Sbjct: 762 PQASSLSG 769
>NEO1_HUMAN (Q92859) Neogenin precursor| Length = 1461 Score = 28.1 bits (61), Expect = 9.9 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Frame = +1 Query: 19 SGTLAS--RSHLSTPPPPFPQRLSPCLSHLTSPQALALGMPRVVLLPPPLSATTCT 180 S +LAS RSHL P P+P S LS + P +P S T CT Sbjct: 1267 SSSLASPARSHLYHPGSPWPIGTSMSLSDRANSTESVRNTPSTDTMPASSSQTCCT 1322 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,317,711 Number of Sequences: 219361 Number of extensions: 1210566 Number of successful extensions: 5852 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 5307 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5820 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
