ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl38f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PATL2_ARATH (Q56ZI2) Patellin-2 30 2.7
2FIBP_ADE02 (P03275) Fiber protein (pIV) 29 4.6
3AMOT_HUMAN (Q4VCS5) Angiomotin 29 4.6
4MUC1_YEAST (P08640) Mucin-like protein 1 precursor 29 6.0
5DUS15_HUMAN (Q9H1R2) Dual specificity protein phosphatase 15 (EC... 29 6.0
6PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM ... 28 7.9

>PATL2_ARATH (Q56ZI2) Patellin-2|
          Length = 683

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = -2

Query: 283 EVAPVAPLTACTGAVEVAPVAPLTARTGALEXXXXXXXXXXXXXXVHRKEKEEG*RVAT 107
           E  P AP+ A T   E+ P AP+T  T   E                 KE+E+   V T
Sbjct: 198 ETKPAAPVVAETKKEEILPAAPVTTETKVEEKVVPVETTPAAPVTTETKEEEKAAPVTT 256



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>FIBP_ADE02 (P03275) Fiber protein (pIV)|
          Length = 582

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 268 APLTACTGAVEVAPVAPLTARTGAL 194
           APLT  +GA+ VA  APL   +GAL
Sbjct: 103 APLTITSGALTVATTAPLIVTSGAL 127



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>AMOT_HUMAN (Q4VCS5) Angiomotin|
          Length = 1084

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 20/81 (24%), Positives = 23/81 (28%)
 Frame = -2

Query: 436  TCTVEVAAVAQVASRTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEVAPVAPLT 257
            T T+  AA   VA+                                       A VAP  
Sbjct: 904  TTTMVAAAPVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAAVAPSA 963

Query: 256  ACTGAVEVAPVAPLTARTGAL 194
            A   AV+VAP AP      AL
Sbjct: 964  AAAAAVQVAPAAPAPVPAPAL 984



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>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 75  APLPRPASSSTVATRHPSSFSFRXXXXXXXXXXXXXXXXSRAP 203
           AP+P P+SSS + +  PSS  F                 S+ P
Sbjct: 864 APVPTPSSSSNITSSAPSSIPFSSTTESFSTGTTVTPSSSKYP 906



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>DUS15_HUMAN (Q9H1R2) Dual specificity protein phosphatase 15 (EC 3.1.3.48) (EC|
           3.1.3.16)
          Length = 295

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 49  IREARGRPARHCRGQRRLRQSPLVTPPP 132
           +REA GR A+ CR   R     L+ PPP
Sbjct: 178 VREATGRTAQRCRLSPRAAAERLLGPPP 205



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>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore|
           membrane protein of 121 kDa) (P145)
          Length = 1229

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 10/37 (27%)
 Frame = -2

Query: 115 VATVEDDAGRGSGAPA----------GLELHVLPAAA 35
           +A+V D  GRG G PA          GL L+++PAAA
Sbjct: 17  IASVRDGRGRGCGGPAGAALLGLSLVGLLLYLVPAAA 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,428,991
Number of Sequences: 219361
Number of extensions: 393588
Number of successful extensions: 1772
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1761
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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