>UBP13_YEAST (P38187) Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 13)
           (Ubiquitin-specific-processing protease 13)
           (Deubiquitinating enzyme 13)
          Length = 688

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 121 GSSTSTSQDSPPIAKEEPCMPPHGGRLSLLRDTGRPP 231
           G  +S  QD+PP+  E P  P    RLS    T RPP
Sbjct: 268 GKPSSRPQDAPPLIVETPNEPGAPSRLSFENVTDRPP 304

>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein|
          Length = 2480

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 121  GSSTSTSQDSPPIAKEEPCMPPHGGRLSLLRDTGRPPGPSSS 246
            G S   S+ S P+ ++ P  PP  G  +  +  G   GPSSS
Sbjct: 2340 GQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSSS 2381

>NMDE3_HUMAN (Q14957) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
            (N-methyl D-aspartate receptor subtype 2C) (NR2C)
            (NMDAR2C)
          Length = 1233

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 112  RARGSSTSTSQDSPPIAKEEPCMPPHGGRLSLLRDTGRPPG 234
            R+  S    + D PP        PP GGR +L+R   +PPG
Sbjct: 939  RSGPSPCLPTPDPPPEPSPTGWGPPDGGRAALVRRAPQPPG 979

>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 431

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 96  SRVASEGKGFLHLHVPRFSADCQGGAVHASPW-RTAQFAEG 215
           +R+ + G  FL  H P    D  GG+ H  P  R+A+F+ G
Sbjct: 341 ARIRNAGAVFLGAHTPEAIGDYVGGSNHVLPTARSARFSSG 381

>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein|
          Length = 1049

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = +1

Query: 130 TSTSQDSPP----IAKEEP--CMPPHGGRLSLLRDTGRPPGPSSS 246
           TS  Q  PP    +A+  P    PP+GG    L  T  PPGP ++
Sbjct: 10  TSQPQQPPPTQQAVARRSPGGTSPPNGGLPGPLTATAAPPGPPAA 54

>HISX1_RHILO (Q989E7) Histidinol dehydrogenase 1 (EC 1.1.1.23) (HDH 1)|
          Length = 430

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 96  SRVASEGKGFLHLHVPRFSADCQGGAVHASPW-RTAQFAEG 215
           SR+ + G  FL  H P    D  GG+ H  P  R+A+F+ G
Sbjct: 341 SRMRNAGAVFLGRHTPEAIGDYVGGSNHVLPTARSARFSSG 381

>SCK1_SCHPO (P50530) Serine/threonine-protein kinase sck1 (EC 2.7.11.1)|
          Length = 696

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 257 PFCDDDDGPGGLPVSLSKLSRPPWGGMHGSSLAIGGESWDVEVEEP 120
           PF D D   GG+P+S+   +RP  G   GSS  +  E    +V  P
Sbjct: 176 PFKDID---GGIPISIPSKNRPLAGSASGSSSGLHSELMLADVRCP 218

>RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-FIP3) (EF|
           hands-containing Rab-interacting protein) (Eferin)
          Length = 756

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 106 PVRARGSSTSTSQDSPPIAKEEPCMPPHGGRLSLLRDTGRPPGPSSSSQ 252
           P R +GSS+S  +    +    P   P  G L+L +  G PP PS  SQ
Sbjct: 142 PFRLQGSSSS-HRARGEVDVFSPFPAPTAGELALEQGPGSPPQPSDLSQ 189

>BRD8_MOUSE (Q8R3B7) Bromodomain-containing protein 8|
          Length = 951

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 106 PVRARGSSTSTSQDSPPIAKEEPCMP 183
           P  +  ++ STS+   P+++ EPC+P
Sbjct: 389 PAPSSAAAVSTSESGAPVSQPEPCVP 414

>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding|
           protein MBD6)
          Length = 1003

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 151 PPIAKEEPCMPPHGGRLSLLRDTGRPP 231
           PP   E PC+PP     +L  +  RPP
Sbjct: 804 PPEQPEAPCLPPESPASALEPEPARPP 830

>CEP68_PONPY (Q5RCQ2) Centrosomal protein of 68 kDa (Cep68 protein)|
          Length = 751

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 245 DDDGPGGLPVSLSKLSRPPWGGMHGS 168
           D DGP  LP S S+   PP   + GS
Sbjct: 517 DTDGPASLPSSSSQSQLPPGAALRGS 542

>HISX_NITWN (Q3SW26) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 429

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 96  SRVASEGKGFLHLHVPRFSADCQGGAVHASPW-RTAQFAEG 215
           +R+ + G  FL  H P    D  GG+ H  P  R+A+F+ G
Sbjct: 341 ARIRNAGAIFLGPHTPEAIGDYVGGSNHVLPTARSARFSSG 381


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,088,881
Number of Sequences: 219361
Number of extensions: 525343
Number of successful extensions: 2074
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2074
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)