ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl38e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF305912.1|AF305912 Hordeum vulgare EDR1 (EDR1) mRNA, complet... 839 0.0
2gb|AY743662.2| Triticum aestivum EDR1 (EDR1) mRNA, complete cds,... 704 0.0
3gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome... 192 7e-46
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 192 7e-46
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 192 7e-46
6dbj|AK121718.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
7gb|AY167575.1| Oryza sativa (japonica cultivar-group) EDR1 (EDR1... 109 8e-21
8gb|AF305911.1|AF305911 Oryza sativa EDR1 (EDR1) mRNA, partial cds 109 8e-21
9dbj|AK111595.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 8e-21
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 84 4e-13
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
12gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome... 84 4e-13
13ref|XM_607564.2| PREDICTED: Bos taurus similar to Friend leukemi... 42 1.5
14gb|BC114042.1| Bos taurus Friend leukemia virus integration 1, m... 42 1.5
15gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, comple... 42 1.5
16gb|AC004824.3| Homo sapiens PAC clone RP1-20B21 from 1, complete... 42 1.5
17gb|AC159166.4| Atelerix albiventris clone LB4-482N5, complete se... 40 5.8
18gb|AC124907.3| Equus caballus clone CH241-409I22, complete sequence 40 5.8
19gb|AC092935.6| Homo sapiens 3q BAC RP11-766D8 (Roswell Park Canc... 40 5.8
20gb|AE010293.1| Pyrococcus furiosus DSM 3638, section 168 of 173 ... 40 5.8
21gb|DP000004.1| Lemur catta target 1 genomic scaffold 40 5.8
22gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold 40 5.8
23gb|AC069531.9| Homo sapiens 3 BAC RP11-592B18 (Roswell Park Canc... 40 5.8
24gb|AC090373.11| Homo sapiens chromosome 18, clone RP11-776B3, co... 40 5.8
25gb|AC123970.3| Lemur catta clone LB2-159J16, complete sequence 40 5.8
26gb|AC149068.4| Mus musculus BAC clone RP23-7G19 from 18, complet... 40 5.8
27gb|DP000020.1| Equus caballus target 1 genomic scaffold 40 5.8

>gb|AF305912.1|AF305912 Hordeum vulgare EDR1 (EDR1) mRNA, complete cds
          Length = 3338

 Score =  839 bits (423), Expect = 0.0
 Identities = 429/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accagatgcagctggcgttggcgctatcagcgtcggcgtcaggcgccgagggcgcggggg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 269 accagatgcagctggcgttggcgctatcagcgtcggcgtcgggcgccgagggcgcggggg 328

                                                                       
Query: 61  atcccgacggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atcccgacggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacccag 388

                                                                       
Query: 121 tcaccaacagcgatcttggtgggggatacaccgcggagtcgctctcccgccgttacaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tcaccaacagcgatcttggtgggggatacaccgcggagtcgctctcccgccgttacaggg 448

                                                                       
Query: 181 actataactttcttgattataatgagaaagtaattgatggattctacgacatatttggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 actataactttcttgattataatgagaaagtaattgatggattctacgacatatttggcc 508

                                                                       
Query: 241 cctctgcggaatcatctgggcacggcaaaataccatcgctggcagagcttcagatgagca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 509 cctctgcggaatcatctgggcacggcaaaataccatcgctggcagagcttcacatgagca 568

                                                                       
Query: 301 ttggggatcttggatatgaagtaattgtggttgactataaatttgataatgctctgcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttggggatcttggatatgaagtaattgtggttgactataaatttgataatgctctgcagg 628

                                                                       
Query: 361 agatgaaggaagtagcagaatgctgcctgttgggctgtcctgacattacagtattggtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agatgaaggaagtagcagaatgctgcctgttgggctgtcctgacattacagtattggtgc 688

                      
Query: 421 gacgaatagct 431
           |||||||||||
Sbjct: 689 gacgaatagct 699



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>gb|AY743662.2| Triticum aestivum EDR1 (EDR1) mRNA, complete cds, alternatively
           spliced
          Length = 3050

 Score =  704 bits (355), Expect = 0.0
 Identities = 412/431 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   accagatgcagctggcgttggcgctatcagcgtcggcgtcaggcgccgagggcgcggggg 60
           |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 240 accagatgcaactggcgttggcgctatcagcgtcggcgtcgggcgccgagggcgctgggg 299

                                                                       
Query: 61  atcccgacggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacccag 120
           ||||||||||||||||||| |||||||| ||||||||||| |||||||||||| |||| |
Sbjct: 300 atcccgacggggagcagatcagaaaggcgaagctgatgagcctcgggaagggccacccgg 359

                                                                       
Query: 121 tcaccaacagcgatcttggtgggggatacaccgcggagtcgctctcccgccgttacaggg 180
           ||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||||||
Sbjct: 360 tcaccaacagcgatcgtggcgggggagacaccccggagtcgctctcccgccgttacaggg 419

                                                                       
Query: 181 actataactttcttgattataatgagaaagtaattgatggattctacgacatatttggcc 240
           ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 420 actataactttcttgattacaatgagaaagtaattgatggattctacgacgtatttggcc 479

                                                                       
Query: 241 cctctgcggaatcatctgggcacggcaaaataccatcgctggcagagcttcagatgagca 300
            |||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 480 tctctgcgggatcatctgggcagggcaaaataccttcactggcagagcttcagatgagca 539

                                                                       
Query: 301 ttggggatcttggatatgaagtaattgtggttgactataaatttgataatgctctgcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttggggatcttggatatgaagtaattgtggttgactataaatttgataatgctctgcagg 599

                                                                       
Query: 361 agatgaaggaagtagcagaatgctgcctgttgggctgtcctgacattacagtattggtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agatgaaggaagtagcagaatgctgcctgttgggctgtcctgacattacagtattggtgc 659

                      
Query: 421 gacgaatagct 431
           |||||||||||
Sbjct: 660 gacgaatagct 670



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>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20,
             complete sequence
          Length = 139421

 Score =  192 bits (97), Expect = 7e-46
 Identities = 214/253 (84%)
 Strand = Plus / Minus

                                                                         
Query: 179   ggactataactttcttgattataatgagaaagtaattgatggattctacgacatatttgg 238
             |||||||||||||||||| || ||||||||||| || ||||| ||||| |||||||||||
Sbjct: 13782 ggactataactttcttgactacaatgagaaagttatagatgggttctatgacatatttgg 13723

                                                                         
Query: 239   cccctctgcggaatcatctgggcacggcaaaataccatcgctggcagagcttcagatgag 298
              |  || | ||| ||  |  |||| || || || |||||||| ||||| |||||||  ||
Sbjct: 13722 actttccggggagtcggccaggcagggaaagatgccatcgcttgcagaacttcagaccag 13663

                                                                         
Query: 299   cattggggatcttggatatgaagtaattgtggttgactataaatttgataatgctctgca 358
             |||||| |||||||| | |||||| |||||||| ||| |||| ||||||| |||  ||||
Sbjct: 13662 cattggagatcttggctttgaagtgattgtggtcgaccataagtttgatagtgccttgca 13603

                                                                         
Query: 359   ggagatgaaggaagtagcagaatgctgcctgttgggctgtcctgacattacagtattggt 418
             |||||||| |||||||||| |||||||| |||||||||||||||| | ||||||||||||
Sbjct: 13602 ggagatgatggaagtagcacaatgctgcatgttgggctgtcctgatactacagtattggt 13543

                          
Query: 419   gcgacgaatagct 431
             |||||||||||||
Sbjct: 13542 gcgacgaatagct 13530



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                              
Query: 69    ggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117
             ||||||||||| || ||||| ||||||||||| ||||||| ||||||||
Sbjct: 15996 ggggagcagatcaggaaggcgaagctgatgagcctcgggaggggcgacc 15948



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 1     accagatgcagctggcgttggcgctatcagcgtcggcgtc 40
             ||||||| ||||||||  ||||||| || |||||||||||
Sbjct: 16079 accagatacagctggcaatggcgctgtcggcgtcggcgtc 16040



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  192 bits (97), Expect = 7e-46
 Identities = 214/253 (84%)
 Strand = Plus / Minus

                                                                            
Query: 179      ggactataactttcttgattataatgagaaagtaattgatggattctacgacatatttgg 238
                |||||||||||||||||| || ||||||||||| || ||||| ||||| |||||||||||
Sbjct: 14834004 ggactataactttcttgactacaatgagaaagttatagatgggttctatgacatatttgg 14833945

                                                                            
Query: 239      cccctctgcggaatcatctgggcacggcaaaataccatcgctggcagagcttcagatgag 298
                 |  || | ||| ||  |  |||| || || || |||||||| ||||| |||||||  ||
Sbjct: 14833944 actttccggggagtcggccaggcagggaaagatgccatcgcttgcagaacttcagaccag 14833885

                                                                            
Query: 299      cattggggatcttggatatgaagtaattgtggttgactataaatttgataatgctctgca 358
                |||||| |||||||| | |||||| |||||||| ||| |||| ||||||| |||  ||||
Sbjct: 14833884 cattggagatcttggctttgaagtgattgtggtcgaccataagtttgatagtgccttgca 14833825

                                                                            
Query: 359      ggagatgaaggaagtagcagaatgctgcctgttgggctgtcctgacattacagtattggt 418
                |||||||| |||||||||| |||||||| |||||||||||||||| | ||||||||||||
Sbjct: 14833824 ggagatgatggaagtagcacaatgctgcatgttgggctgtcctgatactacagtattggt 14833765

                             
Query: 419      gcgacgaatagct 431
                |||||||||||||
Sbjct: 14833764 gcgacgaatagct 14833752



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                                 
Query: 69       ggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117
                ||||||||||| || ||||| ||||||||||| ||||||| ||||||||
Sbjct: 14836218 ggggagcagatcaggaaggcgaagctgatgagcctcgggaggggcgacc 14836170



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 1        accagatgcagctggcgttggcgctatcagcgtcggcgtc 40
                ||||||| ||||||||  ||||||| || |||||||||||
Sbjct: 14836301 accagatacagctggcaatggcgctgtcggcgtcggcgtc 14836262



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  192 bits (97), Expect = 7e-46
 Identities = 214/253 (84%)
 Strand = Plus / Minus

                                                                            
Query: 179      ggactataactttcttgattataatgagaaagtaattgatggattctacgacatatttgg 238
                |||||||||||||||||| || ||||||||||| || ||||| ||||| |||||||||||
Sbjct: 14842245 ggactataactttcttgactacaatgagaaagttatagatgggttctatgacatatttgg 14842186

                                                                            
Query: 239      cccctctgcggaatcatctgggcacggcaaaataccatcgctggcagagcttcagatgag 298
                 |  || | ||| ||  |  |||| || || || |||||||| ||||| |||||||  ||
Sbjct: 14842185 actttccggggagtcggccaggcagggaaagatgccatcgcttgcagaacttcagaccag 14842126

                                                                            
Query: 299      cattggggatcttggatatgaagtaattgtggttgactataaatttgataatgctctgca 358
                |||||| |||||||| | |||||| |||||||| ||| |||| ||||||| |||  ||||
Sbjct: 14842125 cattggagatcttggctttgaagtgattgtggtcgaccataagtttgatagtgccttgca 14842066

                                                                            
Query: 359      ggagatgaaggaagtagcagaatgctgcctgttgggctgtcctgacattacagtattggt 418
                |||||||| |||||||||| |||||||| |||||||||||||||| | ||||||||||||
Sbjct: 14842065 ggagatgatggaagtagcacaatgctgcatgttgggctgtcctgatactacagtattggt 14842006

                             
Query: 419      gcgacgaatagct 431
                |||||||||||||
Sbjct: 14842005 gcgacgaatagct 14841993



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                                 
Query: 69       ggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117
                ||||||||||| || ||||| ||||||||||| ||||||| ||||||||
Sbjct: 14844459 ggggagcagatcaggaaggcgaagctgatgagcctcgggaggggcgacc 14844411



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 1        accagatgcagctggcgttggcgctatcagcgtcggcgtc 40
                ||||||| ||||||||  ||||||| || |||||||||||
Sbjct: 14844542 accagatacagctggcaatggcgctgtcggcgtcggcgtc 14844503



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>dbj|AK121718.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079M14, full
           insert sequence
          Length = 3394

 Score =  141 bits (71), Expect = 2e-30
 Identities = 137/159 (86%)
 Strand = Plus / Plus

                                                                       
Query: 273 ccatcgctggcagagcttcagatgagcattggggatcttggatatgaagtaattgtggtt 332
           |||||||| ||||| |||||||  |||||||| |||||||| | |||||| |||||||| 
Sbjct: 574 ccatcgcttgcagaacttcagaccagcattggagatcttggctttgaagtgattgtggtc 633

                                                                       
Query: 333 gactataaatttgataatgctctgcaggagatgaaggaagtagcagaatgctgcctgttg 392
           ||| |||  ||||||| |||  ||||||| |||| |||||||||| |||||||| |||||
Sbjct: 634 gaccatatgtttgatagtgccttgcaggatatgatggaagtagcacaatgctgcatgttg 693

                                                  
Query: 393 ggctgtcctgacattacagtattggtgcgacgaatagct 431
           ||||||||||| | |||||||||||||| ||||||||||
Sbjct: 694 ggctgtcctgatactacagtattggtgctacgaatagct 732



 Score =  103 bits (52), Expect = 5e-19
 Identities = 79/88 (89%)
 Strand = Plus / Plus

                                                                       
Query: 151 ccgcggagtcgctctcccgccgttacagggactataactttcttgattataatgagaaag 210
           |||||||| ||||||||||||| ||| ||||||||||||||||||| || ||||||||||
Sbjct: 451 ccgcggaggcgctctcccgccgataccgggactataactttcttgactacaatgagaaag 510

                                       
Query: 211 taattgatggattctacgacatatttgg 238
           | || ||||| ||||| |||||||||||
Sbjct: 511 ttatagatgggttctatgacatatttgg 538



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                            
Query: 69  ggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117
           ||||||||||| || ||||| ||||||||||| ||||||| ||||||||
Sbjct: 369 ggggagcagatcaggaaggcgaagctgatgagcctcgggaggggcgacc 417



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 1   accagatgcagctggcgttggcgctatcagcgtcggcgtc 40
           ||||||| ||||||||  ||||||| || |||||||||||
Sbjct: 286 accagatacagctggcaatggcgctgtcggcgtcggcgtc 325



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>gb|AY167575.1| Oryza sativa (japonica cultivar-group) EDR1 (EDR1) mRNA, complete
           cds
          Length = 3311

 Score =  109 bits (55), Expect = 8e-21
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                       
Query: 150 accgcggagtcgctctcccgccgttacagggactataactttcttgattataatgagaaa 209
           ||||||||  ||||||||||||| ||| ||||||| ||||||||||||||  ||||||||
Sbjct: 435 accgcggatgcgctctcccgccgctaccgggactacaactttcttgattaccatgagaaa 494

                                                          
Query: 210 gtaattgatggattctacgacatatttggcccctctgcggaatcatc 256
           || |||||||| ||||| ||||| ||||||||||||  |||||||||
Sbjct: 495 gttattgatggcttctatgacatttttggcccctctatggaatcatc 541



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 66  gacggggagcagattagaaaggccaagctgatgagtctcgg 106
           |||||||||||||| || |||||||||||||| || |||||
Sbjct: 354 gacggggagcagatcaggaaggccaagctgataagcctcgg 394



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>gb|AF305911.1|AF305911 Oryza sativa EDR1 (EDR1) mRNA, partial cds
          Length = 3158

 Score =  109 bits (55), Expect = 8e-21
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                       
Query: 150 accgcggagtcgctctcccgccgttacagggactataactttcttgattataatgagaaa 209
           ||||||||  ||||||||||||| ||| ||||||| ||||||||||||||  ||||||||
Sbjct: 73  accgcggatgcgctctcccgccgctaccgggactacaactttcttgattaccatgagaaa 132

                                                          
Query: 210 gtaattgatggattctacgacatatttggcccctctgcggaatcatc 256
           || |||||||| ||||| ||||| ||||||||||||  |||||||||
Sbjct: 133 gttattgatggcttctatgacatttttggcccctctatggaatcatc 179



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>dbj|AK111595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091G05, full
           insert sequence
          Length = 3645

 Score =  109 bits (55), Expect = 8e-21
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                       
Query: 150 accgcggagtcgctctcccgccgttacagggactataactttcttgattataatgagaaa 209
           ||||||||  ||||||||||||| ||| ||||||| ||||||||||||||  ||||||||
Sbjct: 577 accgcggatgcgctctcccgccgctaccgggactacaactttcttgattaccatgagaaa 636

                                                          
Query: 210 gtaattgatggattctacgacatatttggcccctctgcggaatcatc 256
           || |||||||| ||||| ||||| ||||||||||||  |||||||||
Sbjct: 637 gttattgatggcttctatgacatttttggcccctctatggaatcatc 683



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 66  gacggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117
           |||||||||||||| || |||||||||||||| || ||||| | ||||||||
Sbjct: 496 gacggggagcagatcaggaaggccaagctgataagcctcggcaggggcgacc 547



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 2   ccagatgcagctggcgttggcgctatcagcgtc 34
           |||||||||||||||| ||||||| || |||||
Sbjct: 438 ccagatgcagctggcgatggcgctgtcggcgtc 470



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                           
Query: 179     ggactataactttcttgattataatgagaaagtaattgatggattctacgacatatttgg 238
               |||||| ||||||||||||||  |||||||||| |||||||| ||||| ||||| |||||
Sbjct: 3184435 ggactacaactttcttgattaccatgagaaagttattgatggcttctatgacatttttgg 3184494

                                 
Query: 239     cccctctgcggaatcatc 256
               |||||||  |||||||||
Sbjct: 3184495 cccctctatggaatcatc 3184512



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                   
Query: 66      gacggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117
               |||||||||||||| || |||||||||||||| || ||||| | ||||||||
Sbjct: 3183514 gacggggagcagatcaggaaggccaagctgataagcctcggcaggggcgacc 3183565



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 2       ccagatgcagctggcgttggcgctatcagcgtc 34
               |||||||||||||||| ||||||| || |||||
Sbjct: 3183456 ccagatgcagctggcgatggcgctgtcggcgtc 3183488



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                           
Query: 179     ggactataactttcttgattataatgagaaagtaattgatggattctacgacatatttgg 238
               |||||| ||||||||||||||  |||||||||| |||||||| ||||| ||||| |||||
Sbjct: 3184546 ggactacaactttcttgattaccatgagaaagttattgatggcttctatgacatttttgg 3184605

                                 
Query: 239     cccctctgcggaatcatc 256
               |||||||  |||||||||
Sbjct: 3184606 cccctctatggaatcatc 3184623



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                   
Query: 66      gacggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117
               |||||||||||||| || |||||||||||||| || ||||| | ||||||||
Sbjct: 3183625 gacggggagcagatcaggaaggccaagctgataagcctcggcaggggcgacc 3183676



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 2       ccagatgcagctggcgttggcgctatcagcgtc 34
               |||||||||||||||| ||||||| || |||||
Sbjct: 3183567 ccagatgcagctggcgatggcgctgtcggcgtc 3183599



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>gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0083G16, complete sequence
          Length = 145590

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                        
Query: 179  ggactataactttcttgattataatgagaaagtaattgatggattctacgacatatttgg 238
            |||||| ||||||||||||||  |||||||||| |||||||| ||||| ||||| |||||
Sbjct: 9308 ggactacaactttcttgattaccatgagaaagttattgatggcttctatgacatttttgg 9367

                              
Query: 239  cccctctgcggaatcatc 256
            |||||||  |||||||||
Sbjct: 9368 cccctctatggaatcatc 9385



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                
Query: 66   gacggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117
            |||||||||||||| || |||||||||||||| || ||||| | ||||||||
Sbjct: 8387 gacggggagcagatcaggaaggccaagctgataagcctcggcaggggcgacc 8438



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 2    ccagatgcagctggcgttggcgctatcagcgtc 34
            |||||||||||||||| ||||||| || |||||
Sbjct: 8329 ccagatgcagctggcgatggcgctgtcggcgtc 8361



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>ref|XM_607564.2| PREDICTED: Bos taurus similar to Friend leukemia integration 1
           transcription factor (Fli-1 proto-oncogene) (ERGB
           transcription factor) (LOC529124), mRNA
          Length = 1272

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 5   gatgcagctggcgttggcgct 25
           |||||||||||||||||||||
Sbjct: 384 gatgcagctggcgttggcgct 364



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>gb|BC114042.1| Bos taurus Friend leukemia virus integration 1, mRNA (cDNA clone
            MGC:137447 IMAGE:8162613), complete cds
          Length = 2944

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 5    gatgcagctggcgttggcgct 25
            |||||||||||||||||||||
Sbjct: 1007 gatgcagctggcgttggcgct 987



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>gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, complete sequence
          Length = 200908

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   cttgattataatgagaaagta 212
             |||||||||||||||||||||
Sbjct: 49788 cttgattataatgagaaagta 49808



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>gb|AC004824.3| Homo sapiens PAC clone RP1-20B21 from 1, complete sequence
          Length = 137506

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 381   tgctgcctgttgggctgtcct 401
             |||||||||||||||||||||
Sbjct: 49344 tgctgcctgttgggctgtcct 49364



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>gb|AC159166.4| Atelerix albiventris clone LB4-482N5, complete sequence
          Length = 61580

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   attataatgagaaagtaatt 215
             ||||||||||||||||||||
Sbjct: 36289 attataatgagaaagtaatt 36308



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>gb|AC124907.3| Equus caballus clone CH241-409I22, complete sequence
          Length = 202157

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   attataatgagaaagtaatt 215
             ||||||||||||||||||||
Sbjct: 87754 attataatgagaaagtaatt 87773



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>gb|AC092935.6| Homo sapiens 3q BAC RP11-766D8 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 19701

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  ttcttgattataatgagaaa 209
            ||||||||||||||||||||
Sbjct: 2898 ttcttgattataatgagaaa 2879



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>gb|AE010293.1| Pyrococcus furiosus DSM 3638, section 168 of 173 of the complete
            genome
          Length = 9294

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 69   ggggagcagattagaaaggccaag 92
            |||||| |||||||||||||||||
Sbjct: 7416 ggggaggagattagaaaggccaag 7439



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>gb|DP000004.1| Lemur catta target 1 genomic scaffold
          Length = 1399362

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    attataatgagaaagtaatt 215
              ||||||||||||||||||||
Sbjct: 411513 attataatgagaaagtaatt 411532



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>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold
          Length = 1570569

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    attataatgagaaagtaatt 215
              ||||||||||||||||||||
Sbjct: 438517 attataatgagaaagtaatt 438536



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>gb|AC069531.9| Homo sapiens 3 BAC RP11-592B18 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 63325

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  ttcttgattataatgagaaa 209
            ||||||||||||||||||||
Sbjct: 2891 ttcttgattataatgagaaa 2872



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>gb|AC090373.11| Homo sapiens chromosome 18, clone RP11-776B3, complete sequence
          Length = 143456

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    ggcgccgagggcgcggggga 61
             ||||||||||||||||||||
Sbjct: 52731 ggcgccgagggcgcggggga 52750



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>gb|AC123970.3| Lemur catta clone LB2-159J16, complete sequence
          Length = 183268

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    attataatgagaaagtaatt 215
              ||||||||||||||||||||
Sbjct: 145562 attataatgagaaagtaatt 145581



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>gb|AC149068.4| Mus musculus BAC clone RP23-7G19 from 18, complete sequence
          Length = 232071

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   tataatgagaaagtaattga 217
             ||||||||||||||||||||
Sbjct: 41743 tataatgagaaagtaattga 41724



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>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    attataatgagaaagtaatt 215
              ||||||||||||||||||||
Sbjct: 595948 attataatgagaaagtaatt 595967


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,204,786
Number of Sequences: 3902068
Number of extensions: 3204786
Number of successful extensions: 59054
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58877
Number of HSP's gapped (non-prelim): 177
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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