Clone Name | bastl38e11 |
---|---|
Clone Library Name | barley_pub |
>gb|AF305912.1|AF305912 Hordeum vulgare EDR1 (EDR1) mRNA, complete cds Length = 3338 Score = 839 bits (423), Expect = 0.0 Identities = 429/431 (99%) Strand = Plus / Plus Query: 1 accagatgcagctggcgttggcgctatcagcgtcggcgtcaggcgccgagggcgcggggg 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 269 accagatgcagctggcgttggcgctatcagcgtcggcgtcgggcgccgagggcgcggggg 328 Query: 61 atcccgacggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacccag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 atcccgacggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacccag 388 Query: 121 tcaccaacagcgatcttggtgggggatacaccgcggagtcgctctcccgccgttacaggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 tcaccaacagcgatcttggtgggggatacaccgcggagtcgctctcccgccgttacaggg 448 Query: 181 actataactttcttgattataatgagaaagtaattgatggattctacgacatatttggcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 actataactttcttgattataatgagaaagtaattgatggattctacgacatatttggcc 508 Query: 241 cctctgcggaatcatctgggcacggcaaaataccatcgctggcagagcttcagatgagca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 509 cctctgcggaatcatctgggcacggcaaaataccatcgctggcagagcttcacatgagca 568 Query: 301 ttggggatcttggatatgaagtaattgtggttgactataaatttgataatgctctgcagg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 569 ttggggatcttggatatgaagtaattgtggttgactataaatttgataatgctctgcagg 628 Query: 361 agatgaaggaagtagcagaatgctgcctgttgggctgtcctgacattacagtattggtgc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 629 agatgaaggaagtagcagaatgctgcctgttgggctgtcctgacattacagtattggtgc 688 Query: 421 gacgaatagct 431 ||||||||||| Sbjct: 689 gacgaatagct 699
>gb|AY743662.2| Triticum aestivum EDR1 (EDR1) mRNA, complete cds, alternatively spliced Length = 3050 Score = 704 bits (355), Expect = 0.0 Identities = 412/431 (95%) Strand = Plus / Plus Query: 1 accagatgcagctggcgttggcgctatcagcgtcggcgtcaggcgccgagggcgcggggg 60 |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 240 accagatgcaactggcgttggcgctatcagcgtcggcgtcgggcgccgagggcgctgggg 299 Query: 61 atcccgacggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacccag 120 ||||||||||||||||||| |||||||| ||||||||||| |||||||||||| |||| | Sbjct: 300 atcccgacggggagcagatcagaaaggcgaagctgatgagcctcgggaagggccacccgg 359 Query: 121 tcaccaacagcgatcttggtgggggatacaccgcggagtcgctctcccgccgttacaggg 180 ||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||| Sbjct: 360 tcaccaacagcgatcgtggcgggggagacaccccggagtcgctctcccgccgttacaggg 419 Query: 181 actataactttcttgattataatgagaaagtaattgatggattctacgacatatttggcc 240 ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct: 420 actataactttcttgattacaatgagaaagtaattgatggattctacgacgtatttggcc 479 Query: 241 cctctgcggaatcatctgggcacggcaaaataccatcgctggcagagcttcagatgagca 300 |||||||| |||||||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 480 tctctgcgggatcatctgggcagggcaaaataccttcactggcagagcttcagatgagca 539 Query: 301 ttggggatcttggatatgaagtaattgtggttgactataaatttgataatgctctgcagg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 ttggggatcttggatatgaagtaattgtggttgactataaatttgataatgctctgcagg 599 Query: 361 agatgaaggaagtagcagaatgctgcctgttgggctgtcctgacattacagtattggtgc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 agatgaaggaagtagcagaatgctgcctgttgggctgtcctgacattacagtattggtgc 659 Query: 421 gacgaatagct 431 ||||||||||| Sbjct: 660 gacgaatagct 670
>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20, complete sequence Length = 139421 Score = 192 bits (97), Expect = 7e-46 Identities = 214/253 (84%) Strand = Plus / Minus Query: 179 ggactataactttcttgattataatgagaaagtaattgatggattctacgacatatttgg 238 |||||||||||||||||| || ||||||||||| || ||||| ||||| ||||||||||| Sbjct: 13782 ggactataactttcttgactacaatgagaaagttatagatgggttctatgacatatttgg 13723 Query: 239 cccctctgcggaatcatctgggcacggcaaaataccatcgctggcagagcttcagatgag 298 | || | ||| || | |||| || || || |||||||| ||||| ||||||| || Sbjct: 13722 actttccggggagtcggccaggcagggaaagatgccatcgcttgcagaacttcagaccag 13663 Query: 299 cattggggatcttggatatgaagtaattgtggttgactataaatttgataatgctctgca 358 |||||| |||||||| | |||||| |||||||| ||| |||| ||||||| ||| |||| Sbjct: 13662 cattggagatcttggctttgaagtgattgtggtcgaccataagtttgatagtgccttgca 13603 Query: 359 ggagatgaaggaagtagcagaatgctgcctgttgggctgtcctgacattacagtattggt 418 |||||||| |||||||||| |||||||| |||||||||||||||| | |||||||||||| Sbjct: 13602 ggagatgatggaagtagcacaatgctgcatgttgggctgtcctgatactacagtattggt 13543 Query: 419 gcgacgaatagct 431 ||||||||||||| Sbjct: 13542 gcgacgaatagct 13530 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 69 ggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117 ||||||||||| || ||||| ||||||||||| ||||||| |||||||| Sbjct: 15996 ggggagcagatcaggaaggcgaagctgatgagcctcgggaggggcgacc 15948 Score = 40.1 bits (20), Expect = 5.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 1 accagatgcagctggcgttggcgctatcagcgtcggcgtc 40 ||||||| |||||||| ||||||| || ||||||||||| Sbjct: 16079 accagatacagctggcaatggcgctgtcggcgtcggcgtc 16040
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 192 bits (97), Expect = 7e-46 Identities = 214/253 (84%) Strand = Plus / Minus Query: 179 ggactataactttcttgattataatgagaaagtaattgatggattctacgacatatttgg 238 |||||||||||||||||| || ||||||||||| || ||||| ||||| ||||||||||| Sbjct: 14834004 ggactataactttcttgactacaatgagaaagttatagatgggttctatgacatatttgg 14833945 Query: 239 cccctctgcggaatcatctgggcacggcaaaataccatcgctggcagagcttcagatgag 298 | || | ||| || | |||| || || || |||||||| ||||| ||||||| || Sbjct: 14833944 actttccggggagtcggccaggcagggaaagatgccatcgcttgcagaacttcagaccag 14833885 Query: 299 cattggggatcttggatatgaagtaattgtggttgactataaatttgataatgctctgca 358 |||||| |||||||| | |||||| |||||||| ||| |||| ||||||| ||| |||| Sbjct: 14833884 cattggagatcttggctttgaagtgattgtggtcgaccataagtttgatagtgccttgca 14833825 Query: 359 ggagatgaaggaagtagcagaatgctgcctgttgggctgtcctgacattacagtattggt 418 |||||||| |||||||||| |||||||| |||||||||||||||| | |||||||||||| Sbjct: 14833824 ggagatgatggaagtagcacaatgctgcatgttgggctgtcctgatactacagtattggt 14833765 Query: 419 gcgacgaatagct 431 ||||||||||||| Sbjct: 14833764 gcgacgaatagct 14833752 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 69 ggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117 ||||||||||| || ||||| ||||||||||| ||||||| |||||||| Sbjct: 14836218 ggggagcagatcaggaaggcgaagctgatgagcctcgggaggggcgacc 14836170 Score = 40.1 bits (20), Expect = 5.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 1 accagatgcagctggcgttggcgctatcagcgtcggcgtc 40 ||||||| |||||||| ||||||| || ||||||||||| Sbjct: 14836301 accagatacagctggcaatggcgctgtcggcgtcggcgtc 14836262
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 192 bits (97), Expect = 7e-46 Identities = 214/253 (84%) Strand = Plus / Minus Query: 179 ggactataactttcttgattataatgagaaagtaattgatggattctacgacatatttgg 238 |||||||||||||||||| || ||||||||||| || ||||| ||||| ||||||||||| Sbjct: 14842245 ggactataactttcttgactacaatgagaaagttatagatgggttctatgacatatttgg 14842186 Query: 239 cccctctgcggaatcatctgggcacggcaaaataccatcgctggcagagcttcagatgag 298 | || | ||| || | |||| || || || |||||||| ||||| ||||||| || Sbjct: 14842185 actttccggggagtcggccaggcagggaaagatgccatcgcttgcagaacttcagaccag 14842126 Query: 299 cattggggatcttggatatgaagtaattgtggttgactataaatttgataatgctctgca 358 |||||| |||||||| | |||||| |||||||| ||| |||| ||||||| ||| |||| Sbjct: 14842125 cattggagatcttggctttgaagtgattgtggtcgaccataagtttgatagtgccttgca 14842066 Query: 359 ggagatgaaggaagtagcagaatgctgcctgttgggctgtcctgacattacagtattggt 418 |||||||| |||||||||| |||||||| |||||||||||||||| | |||||||||||| Sbjct: 14842065 ggagatgatggaagtagcacaatgctgcatgttgggctgtcctgatactacagtattggt 14842006 Query: 419 gcgacgaatagct 431 ||||||||||||| Sbjct: 14842005 gcgacgaatagct 14841993 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 69 ggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117 ||||||||||| || ||||| ||||||||||| ||||||| |||||||| Sbjct: 14844459 ggggagcagatcaggaaggcgaagctgatgagcctcgggaggggcgacc 14844411 Score = 40.1 bits (20), Expect = 5.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 1 accagatgcagctggcgttggcgctatcagcgtcggcgtc 40 ||||||| |||||||| ||||||| || ||||||||||| Sbjct: 14844542 accagatacagctggcaatggcgctgtcggcgtcggcgtc 14844503
>dbj|AK121718.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079M14, full insert sequence Length = 3394 Score = 141 bits (71), Expect = 2e-30 Identities = 137/159 (86%) Strand = Plus / Plus Query: 273 ccatcgctggcagagcttcagatgagcattggggatcttggatatgaagtaattgtggtt 332 |||||||| ||||| ||||||| |||||||| |||||||| | |||||| |||||||| Sbjct: 574 ccatcgcttgcagaacttcagaccagcattggagatcttggctttgaagtgattgtggtc 633 Query: 333 gactataaatttgataatgctctgcaggagatgaaggaagtagcagaatgctgcctgttg 392 ||| ||| ||||||| ||| ||||||| |||| |||||||||| |||||||| ||||| Sbjct: 634 gaccatatgtttgatagtgccttgcaggatatgatggaagtagcacaatgctgcatgttg 693 Query: 393 ggctgtcctgacattacagtattggtgcgacgaatagct 431 ||||||||||| | |||||||||||||| |||||||||| Sbjct: 694 ggctgtcctgatactacagtattggtgctacgaatagct 732 Score = 103 bits (52), Expect = 5e-19 Identities = 79/88 (89%) Strand = Plus / Plus Query: 151 ccgcggagtcgctctcccgccgttacagggactataactttcttgattataatgagaaag 210 |||||||| ||||||||||||| ||| ||||||||||||||||||| || |||||||||| Sbjct: 451 ccgcggaggcgctctcccgccgataccgggactataactttcttgactacaatgagaaag 510 Query: 211 taattgatggattctacgacatatttgg 238 | || ||||| ||||| ||||||||||| Sbjct: 511 ttatagatgggttctatgacatatttgg 538 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 69 ggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117 ||||||||||| || ||||| ||||||||||| ||||||| |||||||| Sbjct: 369 ggggagcagatcaggaaggcgaagctgatgagcctcgggaggggcgacc 417 Score = 40.1 bits (20), Expect = 5.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 1 accagatgcagctggcgttggcgctatcagcgtcggcgtc 40 ||||||| |||||||| ||||||| || ||||||||||| Sbjct: 286 accagatacagctggcaatggcgctgtcggcgtcggcgtc 325
>gb|AY167575.1| Oryza sativa (japonica cultivar-group) EDR1 (EDR1) mRNA, complete cds Length = 3311 Score = 109 bits (55), Expect = 8e-21 Identities = 94/107 (87%) Strand = Plus / Plus Query: 150 accgcggagtcgctctcccgccgttacagggactataactttcttgattataatgagaaa 209 |||||||| ||||||||||||| ||| ||||||| |||||||||||||| |||||||| Sbjct: 435 accgcggatgcgctctcccgccgctaccgggactacaactttcttgattaccatgagaaa 494 Query: 210 gtaattgatggattctacgacatatttggcccctctgcggaatcatc 256 || |||||||| ||||| ||||| |||||||||||| ||||||||| Sbjct: 495 gttattgatggcttctatgacatttttggcccctctatggaatcatc 541 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 66 gacggggagcagattagaaaggccaagctgatgagtctcgg 106 |||||||||||||| || |||||||||||||| || ||||| Sbjct: 354 gacggggagcagatcaggaaggccaagctgataagcctcgg 394
>gb|AF305911.1|AF305911 Oryza sativa EDR1 (EDR1) mRNA, partial cds Length = 3158 Score = 109 bits (55), Expect = 8e-21 Identities = 94/107 (87%) Strand = Plus / Plus Query: 150 accgcggagtcgctctcccgccgttacagggactataactttcttgattataatgagaaa 209 |||||||| ||||||||||||| ||| ||||||| |||||||||||||| |||||||| Sbjct: 73 accgcggatgcgctctcccgccgctaccgggactacaactttcttgattaccatgagaaa 132 Query: 210 gtaattgatggattctacgacatatttggcccctctgcggaatcatc 256 || |||||||| ||||| ||||| |||||||||||| ||||||||| Sbjct: 133 gttattgatggcttctatgacatttttggcccctctatggaatcatc 179
>dbj|AK111595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091G05, full insert sequence Length = 3645 Score = 109 bits (55), Expect = 8e-21 Identities = 94/107 (87%) Strand = Plus / Plus Query: 150 accgcggagtcgctctcccgccgttacagggactataactttcttgattataatgagaaa 209 |||||||| ||||||||||||| ||| ||||||| |||||||||||||| |||||||| Sbjct: 577 accgcggatgcgctctcccgccgctaccgggactacaactttcttgattaccatgagaaa 636 Query: 210 gtaattgatggattctacgacatatttggcccctctgcggaatcatc 256 || |||||||| ||||| ||||| |||||||||||| ||||||||| Sbjct: 637 gttattgatggcttctatgacatttttggcccctctatggaatcatc 683 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 66 gacggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117 |||||||||||||| || |||||||||||||| || ||||| | |||||||| Sbjct: 496 gacggggagcagatcaggaaggccaagctgataagcctcggcaggggcgacc 547 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 2 ccagatgcagctggcgttggcgctatcagcgtc 34 |||||||||||||||| ||||||| || ||||| Sbjct: 438 ccagatgcagctggcgatggcgctgtcggcgtc 470
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 83.8 bits (42), Expect = 4e-13 Identities = 69/78 (88%) Strand = Plus / Plus Query: 179 ggactataactttcttgattataatgagaaagtaattgatggattctacgacatatttgg 238 |||||| |||||||||||||| |||||||||| |||||||| ||||| ||||| ||||| Sbjct: 3184435 ggactacaactttcttgattaccatgagaaagttattgatggcttctatgacatttttgg 3184494 Query: 239 cccctctgcggaatcatc 256 ||||||| ||||||||| Sbjct: 3184495 cccctctatggaatcatc 3184512 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 66 gacggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117 |||||||||||||| || |||||||||||||| || ||||| | |||||||| Sbjct: 3183514 gacggggagcagatcaggaaggccaagctgataagcctcggcaggggcgacc 3183565 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 2 ccagatgcagctggcgttggcgctatcagcgtc 34 |||||||||||||||| ||||||| || ||||| Sbjct: 3183456 ccagatgcagctggcgatggcgctgtcggcgtc 3183488
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 83.8 bits (42), Expect = 4e-13 Identities = 69/78 (88%) Strand = Plus / Plus Query: 179 ggactataactttcttgattataatgagaaagtaattgatggattctacgacatatttgg 238 |||||| |||||||||||||| |||||||||| |||||||| ||||| ||||| ||||| Sbjct: 3184546 ggactacaactttcttgattaccatgagaaagttattgatggcttctatgacatttttgg 3184605 Query: 239 cccctctgcggaatcatc 256 ||||||| ||||||||| Sbjct: 3184606 cccctctatggaatcatc 3184623 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 66 gacggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117 |||||||||||||| || |||||||||||||| || ||||| | |||||||| Sbjct: 3183625 gacggggagcagatcaggaaggccaagctgataagcctcggcaggggcgacc 3183676 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 2 ccagatgcagctggcgttggcgctatcagcgtc 34 |||||||||||||||| ||||||| || ||||| Sbjct: 3183567 ccagatgcagctggcgatggcgctgtcggcgtc 3183599
>gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083G16, complete sequence Length = 145590 Score = 83.8 bits (42), Expect = 4e-13 Identities = 69/78 (88%) Strand = Plus / Plus Query: 179 ggactataactttcttgattataatgagaaagtaattgatggattctacgacatatttgg 238 |||||| |||||||||||||| |||||||||| |||||||| ||||| ||||| ||||| Sbjct: 9308 ggactacaactttcttgattaccatgagaaagttattgatggcttctatgacatttttgg 9367 Query: 239 cccctctgcggaatcatc 256 ||||||| ||||||||| Sbjct: 9368 cccctctatggaatcatc 9385 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 66 gacggggagcagattagaaaggccaagctgatgagtctcgggaagggcgacc 117 |||||||||||||| || |||||||||||||| || ||||| | |||||||| Sbjct: 8387 gacggggagcagatcaggaaggccaagctgataagcctcggcaggggcgacc 8438 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 2 ccagatgcagctggcgttggcgctatcagcgtc 34 |||||||||||||||| ||||||| || ||||| Sbjct: 8329 ccagatgcagctggcgatggcgctgtcggcgtc 8361
>ref|XM_607564.2| PREDICTED: Bos taurus similar to Friend leukemia integration 1 transcription factor (Fli-1 proto-oncogene) (ERGB transcription factor) (LOC529124), mRNA Length = 1272 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 gatgcagctggcgttggcgct 25 ||||||||||||||||||||| Sbjct: 384 gatgcagctggcgttggcgct 364
>gb|BC114042.1| Bos taurus Friend leukemia virus integration 1, mRNA (cDNA clone MGC:137447 IMAGE:8162613), complete cds Length = 2944 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 gatgcagctggcgttggcgct 25 ||||||||||||||||||||| Sbjct: 1007 gatgcagctggcgttggcgct 987
>gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, complete sequence Length = 200908 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 cttgattataatgagaaagta 212 ||||||||||||||||||||| Sbjct: 49788 cttgattataatgagaaagta 49808
>gb|AC004824.3| Homo sapiens PAC clone RP1-20B21 from 1, complete sequence Length = 137506 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 381 tgctgcctgttgggctgtcct 401 ||||||||||||||||||||| Sbjct: 49344 tgctgcctgttgggctgtcct 49364
>gb|AC159166.4| Atelerix albiventris clone LB4-482N5, complete sequence Length = 61580 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 attataatgagaaagtaatt 215 |||||||||||||||||||| Sbjct: 36289 attataatgagaaagtaatt 36308
>gb|AC124907.3| Equus caballus clone CH241-409I22, complete sequence Length = 202157 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 attataatgagaaagtaatt 215 |||||||||||||||||||| Sbjct: 87754 attataatgagaaagtaatt 87773
>gb|AC092935.6| Homo sapiens 3q BAC RP11-766D8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 19701 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 ttcttgattataatgagaaa 209 |||||||||||||||||||| Sbjct: 2898 ttcttgattataatgagaaa 2879
>gb|AE010293.1| Pyrococcus furiosus DSM 3638, section 168 of 173 of the complete genome Length = 9294 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 69 ggggagcagattagaaaggccaag 92 |||||| ||||||||||||||||| Sbjct: 7416 ggggaggagattagaaaggccaag 7439
>gb|DP000004.1| Lemur catta target 1 genomic scaffold Length = 1399362 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 attataatgagaaagtaatt 215 |||||||||||||||||||| Sbjct: 411513 attataatgagaaagtaatt 411532
>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold Length = 1570569 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 attataatgagaaagtaatt 215 |||||||||||||||||||| Sbjct: 438517 attataatgagaaagtaatt 438536
>gb|AC069531.9| Homo sapiens 3 BAC RP11-592B18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 63325 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 ttcttgattataatgagaaa 209 |||||||||||||||||||| Sbjct: 2891 ttcttgattataatgagaaa 2872
>gb|AC090373.11| Homo sapiens chromosome 18, clone RP11-776B3, complete sequence Length = 143456 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ggcgccgagggcgcggggga 61 |||||||||||||||||||| Sbjct: 52731 ggcgccgagggcgcggggga 52750
>gb|AC123970.3| Lemur catta clone LB2-159J16, complete sequence Length = 183268 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 attataatgagaaagtaatt 215 |||||||||||||||||||| Sbjct: 145562 attataatgagaaagtaatt 145581
>gb|AC149068.4| Mus musculus BAC clone RP23-7G19 from 18, complete sequence Length = 232071 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tataatgagaaagtaattga 217 |||||||||||||||||||| Sbjct: 41743 tataatgagaaagtaattga 41724
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 attataatgagaaagtaatt 215 |||||||||||||||||||| Sbjct: 595948 attataatgagaaagtaatt 595967 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,204,786 Number of Sequences: 3902068 Number of extensions: 3204786 Number of successful extensions: 59054 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58877 Number of HSP's gapped (non-prelim): 177 length of query: 431 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 409 effective length of database: 17,147,199,772 effective search space: 7013204706748 effective search space used: 7013204706748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)