ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38e09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 125 bits (63), Expect = 1e-25 Identities = 108/123 (87%) Strand = Plus / Plus Query: 111 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 170 ||||| |||||||||||||| ||||||||| ||| ||||||| ||||||||| ||| || Sbjct: 32901846 acgctactggagatcaagaagtccttccgcaatgtggacaacgtgctgtacgattgggcc 32901905 Query: 171 ggcgacggggcgtccccgggctactgctcctggcgcggcgtgctctgcgacaacgtcacc 230 ||||| || ||| | | | |||||||||| |||||||||||||||||||||||||||||| Sbjct: 32901906 ggcgatggcgcgccgcggcgctactgctcgtggcgcggcgtgctctgcgacaacgtcacc 32901965 Query: 231 ttc 233 ||| Sbjct: 32901966 ttc 32901968 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 328 agtcgaatggactctccgggcagatccctgacgagattggtgattgctcgtcgcttaaaa 387 ||||||||| ||| || |||||||||||||| |||||||| |||||| |||||||||||| Sbjct: 32902251 agtcgaatgaactttctgggcagatccctgatgagattggcgattgcacgtcgcttaaaa 32902310 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 248 caacctctcagggttcaatctcggcggcgagatctccccggccttcggggatttgaagag 307 ||||||||| ||| ||||||| || ||||| |||||||||||| ||||| || |||| || Sbjct: 32902067 caacctctcggggctcaatcttgggggcgaaatctccccggccatcgggaatctgaaaag 32902126 Query: 308 cgtcg 312 ||||| Sbjct: 32902127 cgtcg 32902131
>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1534_E09 Length = 126209 Score = 125 bits (63), Expect = 1e-25 Identities = 108/123 (87%) Strand = Plus / Plus Query: 111 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 170 ||||| |||||||||||||| ||||||||| ||| ||||||| ||||||||| ||| || Sbjct: 56587 acgctactggagatcaagaagtccttccgcaatgtggacaacgtgctgtacgattgggcc 56646 Query: 171 ggcgacggggcgtccccgggctactgctcctggcgcggcgtgctctgcgacaacgtcacc 230 ||||| || ||| | | | |||||||||| |||||||||||||||||||||||||||||| Sbjct: 56647 ggcgatggcgcgccgcggcgctactgctcgtggcgcggcgtgctctgcgacaacgtcacc 56706 Query: 231 ttc 233 ||| Sbjct: 56707 ttc 56709 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 328 agtcgaatggactctccgggcagatccctgacgagattggtgattgctcgtcgcttaaaa 387 ||||||||| ||| || |||||||||||||| |||||||| |||||| |||||||||||| Sbjct: 56992 agtcgaatgaactttctgggcagatccctgatgagattggcgattgcacgtcgcttaaaa 57051 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 248 caacctctcagggttcaatctcggcggcgagatctccccggccttcggggatttgaagag 307 ||||||||| ||| ||||||| || ||||| |||||||||||| ||||| || |||| || Sbjct: 56808 caacctctcggggctcaatcttgggggcgaaatctccccggccatcgggaatctgaaaag 56867 Query: 308 cgtcg 312 ||||| Sbjct: 56868 cgtcg 56872
>dbj|AK073793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070P05, full insert sequence Length = 3673 Score = 125 bits (63), Expect = 1e-25 Identities = 153/183 (83%) Strand = Plus / Plus Query: 191 ctactgctcctggcgcggcgtgctctgcgacaacgtcaccttccaagttgcagctctcaa 250 ||||||||| ||||||||||| ||||||||||||||||||||| || || || ||||| Sbjct: 524 ctactgctcgtggcgcggcgtcctctgcgacaacgtcaccttcgccgtcgccgcgctcaa 583 Query: 251 cctctcagggttcaatctcggcggcgagatctccccggccttcggggatttgaagagcgt 310 ||| || ||| |||| ||||| ||||||||||| |||||| |||| |||||| || | Sbjct: 584 cctatccgggctcaacctcggaggcgagatctctccggccgtcggcaggttgaagggcat 643 Query: 311 cgtgtcaattgatttgcagtcgaatggactctccgggcagatccctgacgagattggtga 370 ||| || ||||| ||| |||||||||| || || |||||||||||||| |||||||| || Sbjct: 644 cgtctcgattgacttgaagtcgaatgggctgtctgggcagatccctgatgagattggcga 703 Query: 371 ttg 373 ||| Sbjct: 704 ttg 706 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 111 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 170 |||||||||||||||||||| ||||||||| ||| ||||||| |||||||| ||| || Sbjct: 456 acgctgctggagatcaagaagtccttccgcaatgtggacaacgtactgtacgattgggcc 515 Query: 171 ggcg 174 |||| Sbjct: 516 ggcg 519
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 69.9 bits (35), Expect = 6e-09 Identities = 41/43 (95%) Strand = Plus / Minus Query: 191 ctactgctcctggcgcggcgtgctctgcgacaacgtcaccttc 233 ||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 5261305 ctactgctcgtggcgcggcgtcctctgcgacaacgtcaccttc 5261263 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 111 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 170 |||||||||||||||||||| ||||||||| ||| ||||||| |||||||| ||| || Sbjct: 5261373 acgctgctggagatcaagaagtccttccgcaatgtggacaacgtactgtacgattgggcc 5261314 Query: 171 ggcg 174 |||| Sbjct: 5261313 ggcg 5261310 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 328 agtcgaatggactctccgggcagatccctgacgagattggtgattg 373 |||||||||| || || |||||||||||||| |||||||| ||||| Sbjct: 5260982 agtcgaatgggctgtctgggcagatccctgatgagattggcgattg 5260937 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 gtgctctgcgacaacgtcaccttc 233 ||||||||||||||| |||||||| Sbjct: 9109086 gtgctctgcgacaacatcaccttc 9109109 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 248 caacctctcagggttcaatctcggcggcgagatctccccggccttcgg 295 |||||| || ||| |||| ||||| ||||||||||| |||||| |||| Sbjct: 5261161 caacctatccgggctcaacctcggaggcgagatctctccggccgtcgg 5261114
>dbj|AP005652.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0015B15 Length = 123083 Score = 69.9 bits (35), Expect = 6e-09 Identities = 41/43 (95%) Strand = Plus / Minus Query: 191 ctactgctcctggcgcggcgtgctctgcgacaacgtcaccttc 233 ||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 2817 ctactgctcgtggcgcggcgtcctctgcgacaacgtcaccttc 2775 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 111 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 170 |||||||||||||||||||| ||||||||| ||| ||||||| |||||||| ||| || Sbjct: 2885 acgctgctggagatcaagaagtccttccgcaatgtggacaacgtactgtacgattgggcc 2826 Query: 171 ggcg 174 |||| Sbjct: 2825 ggcg 2822 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 328 agtcgaatggactctccgggcagatccctgacgagattggtgattg 373 |||||||||| || || |||||||||||||| |||||||| ||||| Sbjct: 2494 agtcgaatgggctgtctgggcagatccctgatgagattggcgattg 2449 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 248 caacctctcagggttcaatctcggcggcgagatctccccggccttcgg 295 |||||| || ||| |||| ||||| ||||||||||| |||||| |||| Sbjct: 2673 caacctatccgggctcaacctcggaggcgagatctctccggccgtcgg 2626
>dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016O19 Length = 169120 Score = 69.9 bits (35), Expect = 6e-09 Identities = 41/43 (95%) Strand = Plus / Minus Query: 191 ctactgctcctggcgcggcgtgctctgcgacaacgtcaccttc 233 ||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 128027 ctactgctcgtggcgcggcgtcctctgcgacaacgtcaccttc 127985 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 111 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 170 |||||||||||||||||||| ||||||||| ||| ||||||| |||||||| ||| || Sbjct: 128095 acgctgctggagatcaagaagtccttccgcaatgtggacaacgtactgtacgattgggcc 128036 Query: 171 ggcg 174 |||| Sbjct: 128035 ggcg 128032 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 328 agtcgaatggactctccgggcagatccctgacgagattggtgattg 373 |||||||||| || || |||||||||||||| |||||||| ||||| Sbjct: 127704 agtcgaatgggctgtctgggcagatccctgatgagattggcgattg 127659 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 248 caacctctcagggttcaatctcggcggcgagatctccccggccttcgg 295 |||||| || ||| |||| ||||| ||||||||||| |||||| |||| Sbjct: 127883 caacctatccgggctcaacctcggaggcgagatctctccggccgtcgg 127836
>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase, aminoalcoholphosphotransferase, putative growth-regulating factor 1, putative GAG-POL precursor, putative GAG-POL precursor, putative RIRE2 orf3, putative anthocyanin regulatory C1, putative protein T30F21.6, putative copia polyprotein, putative copia polyprotein, putative protein NP_196765.1, and gb protein genes, complete cds; and putative zinc finger protein gene, partial cds Length = 144159 Score = 61.9 bits (31), Expect = 1e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 191 ctactgctcctggcgcggcgtgctctgcgacaacgtcac 229 ||||||||||||||||||||| || |||||||||||||| Sbjct: 7501 ctactgctcctggcgcggcgtcctgtgcgacaacgtcac 7463 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 328 agtcgaatggactctccgggcagatccctgacgagattggtgattg 373 |||| ||||| || ||||||||||||||||| |||||||||||||| Sbjct: 7181 agtcaaatgggctatccgggcagatccctgatgagattggtgattg 7136 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 111 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 170 |||||| ||||||||||||| ||||||||| | | || ||||| |||||||| ||| || Sbjct: 7569 acgctggtggagatcaagaagtccttccgcaacgtcggcaacgtactgtacgattgggcc 7510 Query: 171 ggcgacg 177 ||||||| Sbjct: 7509 ggcgacg 7503
>gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3), anthocyanin biosynthesis regulatory protein Pl1_B73 (Z576C20.4), putative growth-regulating factor 1 (Z576C20.6), and putative aminoalcoholphosphotransferase (Z576C20.14) genes, complete cds; and putative receptor protein kinase (Z576C20.21) gene, partial cds Length = 155173 Score = 61.9 bits (31), Expect = 1e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 191 ctactgctcctggcgcggcgtgctctgcgacaacgtcac 229 ||||||||||||||||||||| || |||||||||||||| Sbjct: 154398 ctactgctcctggcgcggcgtcctgtgcgacaacgtcac 154436 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 328 agtcgaatggactctccgggcagatccctgacgagattggtgattg 373 |||| ||||| || ||||||||||||||||| |||||||| ||||| Sbjct: 154735 agtcaaatggcctatccgggcagatccctgatgagattggcgattg 154780 Score = 52.0 bits (26), Expect = 0.001 Identities = 56/66 (84%) Strand = Plus / Plus Query: 112 cgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtccg 171 ||||| ||||||||||||| ||||||||| | | || ||||| |||||||| ||| ||| Sbjct: 154331 cgctggtggagatcaagaagtccttccgcaacgtcggcaacgtactgtacgattgggccg 154390 Query: 172 gcgacg 177 |||||| Sbjct: 154391 gcgacg 154396
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 ccgcgatgccgacaacgcgctg 158 |||||||||||||||||||||| Sbjct: 2214128 ccgcgatgccgacaacgcgctg 2214107
>dbj|AB189642.1| Halorhodospira halophila rnfA, nifA, nifB genes for RnfA, NifA, NifB, complete and partial cds Length = 3791 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ggcgagatctccccggccttc 293 ||||||||||||||||||||| Sbjct: 2165 ggcgagatctccccggccttc 2185
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 206 cggcgtgctctgcgacaacgtcac 229 |||||||||| ||||||||||||| Sbjct: 927606 cggcgtgctcggcgacaacgtcac 927629
>gb|AC084438.5| Homo sapiens BAC clone RP11-89D15 from 7, complete sequence Length = 133439 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 tgcagctctcaacctctcag 258 |||||||||||||||||||| Sbjct: 5258 tgcagctctcaacctctcag 5239
>emb|Z98056.2|SPAC5D6 S.pombe chromosome I cosmid c5D6 Length = 21852 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 gagcgtcgtgtcaattgatt 324 |||||||||||||||||||| Sbjct: 11999 gagcgtcgtgtcaattgatt 12018
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 tcggcggcgagatctccccg 287 |||||||||||||||||||| Sbjct: 2945188 tcggcggcgagatctccccg 2945207
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 ccgcgatgccgacaacgcgc 156 |||||||||||||||||||| Sbjct: 245630 ccgcgatgccgacaacgcgc 245611
>dbj|AP003491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0662B01 Length = 155913 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 gtgctctgcgacaacgtcaccttc 233 ||||||||||||||| |||||||| Sbjct: 3108 gtgctctgcgacaacatcaccttc 3131
>dbj|AP005387.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0084K06 Length = 177895 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 gtgctctgcgacaacgtcaccttc 233 ||||||||||||||| |||||||| Sbjct: 156404 gtgctctgcgacaacatcaccttc 156427
>gb|AC147184.3| Mus musculus BAC clone RP24-286F20 from 1, complete sequence Length = 176857 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ttccaagttgcagctctcaa 250 |||||||||||||||||||| Sbjct: 84998 ttccaagttgcagctctcaa 85017
>dbj|AP004503.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02M03, TM0034a, complete sequence Length = 83232 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 339 ctctccgggcagatccctgacgagattggtga 370 |||||||||||||| || || ||||||||||| Sbjct: 78868 ctctccgggcagataccagatgagattggtga 78837 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,998,651 Number of Sequences: 3902068 Number of extensions: 1998651 Number of successful extensions: 31515 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31306 Number of HSP's gapped (non-prelim): 207 length of query: 409 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 387 effective length of database: 17,147,199,772 effective search space: 6635966311764 effective search space used: 6635966311764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
