Clone Name | bastl38e05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK102937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114J19, full insert sequence Length = 2977 Score = 412 bits (208), Expect = e-112 Identities = 292/320 (91%) Strand = Plus / Plus Query: 106 atggaggcgttcggcggcttcttcgtggacgagaaggcggcgcgggtggagaacatcttc 165 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 109 atggaggcgttcggcgggttcttcgtggacgagaaggcggcgcgggtggagaacatcttc 168 Query: 166 gtcgagttccttaagcggttcaaggagccggatgcggcggagccgttctacgatgtagag 225 |||||||||| | ||||||||||||| |||||||||||||| |||||||||| ||| Sbjct: 169 ctcgagttcctcaggcggttcaaggaggcggatgcggcggaggcgttctacgagacggag 228 Query: 226 atggaggcgatgcggtcgcgggagtccaccaccatgtacgtcgatttcgcgcacgttatg 285 ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct: 229 ctggaggcgatgcggtcgcgggagtccaccaccatgtacgtcgacttcgcccacgtcatg 288 Query: 286 cgcttcaacgacgtcctccagaaggccatctccgaggagtaccttaggtttgagccgtac 345 || |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| Sbjct: 289 cgattcaacgacgtcctccagaaggccatctccgaggagtatctcaggttcgagccgtac 348 Query: 346 cttcgcaatgcgtgcaagaggtttgtgatggagcacagagctggcgagaaccgcgcgcca 405 || || ||||||||||||||||||||||||||||| || ||||||||||||| || ||| Sbjct: 349 ctccggaatgcgtgcaagaggtttgtgatggagcagaggactggcgagaaccgtgcacca 408 Query: 406 ataatctctgacgacagccc 425 || |||||||| || ||||| Sbjct: 409 atcatctctgatgatagccc 428
>gb|AY862320.1| Zea mays minichromosome maintenance protein (MCM6) mRNA, complete cds Length = 2785 Score = 321 bits (162), Expect = 1e-84 Identities = 263/296 (88%), Gaps = 3/296 (1%) Strand = Plus / Plus Query: 106 atggaggcgttcggcggcttcttcgtggacgagaaggcggcgcgggtggagaacatcttc 165 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 67 atggaggcgttcggcgggttcttcgtggacgagaaggcagcgcgggtggagaacatcttc 126 Query: 166 gtcgagttccttaagcggttcaaggagccggatgcggcgg---agccgttctacgatgta 222 |||||||||| ||||| ||||||||| | |||| |||| ||||||||||||| | Sbjct: 127 ctcgagttcctgaagcgattcaaggagtctgatggcgcgggagagccgttctacgaggcg 186 Query: 223 gagatggaggcgatgcggtcgcgggagtccaccaccatgtacgtcgatttcgcgcacgtt 282 |||||||||| ||||||||||||||||||||| ||||||||||| || || |||||||| Sbjct: 187 gagatggaggtgatgcggtcgcgggagtccactaccatgtacgtagactttgcgcacgtc 246 Query: 283 atgcgcttcaacgacgtcctccagaaggccatctccgaggagtaccttaggtttgagccg 342 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct: 247 atgcgcttcaacgacgtcctccagaaggccatctctgaggagtacctcaggtttgaaccg 306 Query: 343 taccttcgcaatgcgtgcaagaggtttgtgatggagcacagagctggcgagaaccg 398 ||| | | ||||| ||||||||||||| | |||||||| | |||||||||||||| Sbjct: 307 tacttgaggaatgcatgcaagaggtttgcgttggagcaccgggctggcgagaaccg 362
>gb|AY105381.1| Zea mays PCO072091 mRNA sequence Length = 502 Score = 321 bits (162), Expect = 1e-84 Identities = 263/296 (88%), Gaps = 3/296 (1%) Strand = Plus / Plus Query: 106 atggaggcgttcggcggcttcttcgtggacgagaaggcggcgcgggtggagaacatcttc 165 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 41 atggaggcgttcggcgggttcttcgtggacgagaaggcagcgcgggtggagaacatcttc 100 Query: 166 gtcgagttccttaagcggttcaaggagccggatgcggcgg---agccgttctacgatgta 222 |||||||||| ||||| ||||||||| | |||| |||| ||||||||||||| | Sbjct: 101 ctcgagttcctgaagcgattcaaggagtctgatggcgcgggagagccgttctacgaggcg 160 Query: 223 gagatggaggcgatgcggtcgcgggagtccaccaccatgtacgtcgatttcgcgcacgtt 282 |||||||||| ||||||||||||||||||||| ||||||||||| || || |||||||| Sbjct: 161 gagatggaggtgatgcggtcgcgggagtccactaccatgtacgtagactttgcgcacgtc 220 Query: 283 atgcgcttcaacgacgtcctccagaaggccatctccgaggagtaccttaggtttgagccg 342 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct: 221 atgcgcttcaacgacgtcctccagaaggccatctctgaggagtacctcaggtttgaaccg 280 Query: 343 taccttcgcaatgcgtgcaagaggtttgtgatggagcacagagctggcgagaaccg 398 ||| | | ||||| ||||||||||||| | |||||||| | |||||||||||||| Sbjct: 281 tacttgaggaatgcatgcaagaggtttgcgttggagcaccgggctggcgagaaccg 336
>gb|AC136223.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0093E24, complete sequence Length = 146492 Score = 200 bits (101), Expect = 3e-48 Identities = 134/145 (92%) Strand = Plus / Plus Query: 182 ggttcaaggagccggatgcggcggagccgttctacgatgtagagatggaggcgatgcggt 241 ||||||||||| |||||||||||||| |||||||||| ||| ||||||||||||||| Sbjct: 135064 ggttcaaggaggcggatgcggcggaggcgttctacgagacggagctggaggcgatgcggt 135123 Query: 242 cgcgggagtccaccaccatgtacgtcgatttcgcgcacgttatgcgcttcaacgacgtcc 301 |||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||| Sbjct: 135124 cgcgggagtccaccaccatgtacgtcgacttcgcccacgtcatgcgattcaacgacgtcc 135183 Query: 302 tccagaaggccatctccgaggagta 326 ||||||||||||||||||||||||| Sbjct: 135184 tccagaaggccatctccgaggagta 135208 Score = 125 bits (63), Expect = 1e-25 Identities = 69/71 (97%) Strand = Plus / Plus Query: 106 atggaggcgttcggcggcttcttcgtggacgagaaggcggcgcgggtggagaacatcttc 165 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 134869 atggaggcgttcggcgggttcttcgtggacgagaaggcggcgcgggtggagaacatcttc 134928 Query: 166 gtcgagttcct 176 |||||||||| Sbjct: 134929 ctcgagttcct 134939 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 331 aggtttgagccgtaccttcgcaatgcgtgcaagaggtttgtgatggagcacagagctggc 390 ||||| ||||||||||| || ||||||||||||||||||||||||||||| || ||||| Sbjct: 135430 aggttcgagccgtacctccggaatgcgtgcaagaggtttgtgatggagcagaggactggc 135489 Query: 391 gagaaccgcgcgccaataatctctgacgacagccc 425 |||||||| || ||||| |||||||| || ||||| Sbjct: 135490 gagaaccgtgcaccaatcatctctgatgatagccc 135524
>gb|AC118286.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1384_A02, complete sequence Length = 100251 Score = 200 bits (101), Expect = 3e-48 Identities = 134/145 (92%) Strand = Plus / Plus Query: 182 ggttcaaggagccggatgcggcggagccgttctacgatgtagagatggaggcgatgcggt 241 ||||||||||| |||||||||||||| |||||||||| ||| ||||||||||||||| Sbjct: 9331 ggttcaaggaggcggatgcggcggaggcgttctacgagacggagctggaggcgatgcggt 9390 Query: 242 cgcgggagtccaccaccatgtacgtcgatttcgcgcacgttatgcgcttcaacgacgtcc 301 |||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||| Sbjct: 9391 cgcgggagtccaccaccatgtacgtcgacttcgcccacgtcatgcgattcaacgacgtcc 9450 Query: 302 tccagaaggccatctccgaggagta 326 ||||||||||||||||||||||||| Sbjct: 9451 tccagaaggccatctccgaggagta 9475 Score = 125 bits (63), Expect = 1e-25 Identities = 69/71 (97%) Strand = Plus / Plus Query: 106 atggaggcgttcggcggcttcttcgtggacgagaaggcggcgcgggtggagaacatcttc 165 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 9136 atggaggcgttcggcgggttcttcgtggacgagaaggcggcgcgggtggagaacatcttc 9195 Query: 166 gtcgagttcct 176 |||||||||| Sbjct: 9196 ctcgagttcct 9206 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 331 aggtttgagccgtaccttcgcaatgcgtgcaagaggtttgtgatggagcacagagctggc 390 ||||| ||||||||||| || ||||||||||||||||||||||||||||| || ||||| Sbjct: 9697 aggttcgagccgtacctccggaatgcgtgcaagaggtttgtgatggagcagaggactggc 9756 Query: 391 gagaaccgcgcgccaataatctctgacgacagccc 425 |||||||| || ||||| |||||||| || ||||| Sbjct: 9757 gagaaccgtgcaccaatcatctctgatgatagccc 9791
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 200 bits (101), Expect = 3e-48 Identities = 134/145 (92%) Strand = Plus / Plus Query: 182 ggttcaaggagccggatgcggcggagccgttctacgatgtagagatggaggcgatgcggt 241 ||||||||||| |||||||||||||| |||||||||| ||| ||||||||||||||| Sbjct: 8212843 ggttcaaggaggcggatgcggcggaggcgttctacgagacggagctggaggcgatgcggt 8212902 Query: 242 cgcgggagtccaccaccatgtacgtcgatttcgcgcacgttatgcgcttcaacgacgtcc 301 |||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||| Sbjct: 8212903 cgcgggagtccaccaccatgtacgtcgacttcgcccacgtcatgcgattcaacgacgtcc 8212962 Query: 302 tccagaaggccatctccgaggagta 326 ||||||||||||||||||||||||| Sbjct: 8212963 tccagaaggccatctccgaggagta 8212987 Score = 125 bits (63), Expect = 1e-25 Identities = 69/71 (97%) Strand = Plus / Plus Query: 106 atggaggcgttcggcggcttcttcgtggacgagaaggcggcgcgggtggagaacatcttc 165 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 8212648 atggaggcgttcggcgggttcttcgtggacgagaaggcggcgcgggtggagaacatcttc 8212707 Query: 166 gtcgagttcct 176 |||||||||| Sbjct: 8212708 ctcgagttcct 8212718 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 331 aggtttgagccgtaccttcgcaatgcgtgcaagaggtttgtgatggagcacagagctggc 390 ||||| ||||||||||| || ||||||||||||||||||||||||||||| || ||||| Sbjct: 8213209 aggttcgagccgtacctccggaatgcgtgcaagaggtttgtgatggagcagaggactggc 8213268 Query: 391 gagaaccgcgcgccaataatctctgacgacagccc 425 |||||||| || ||||| |||||||| || ||||| Sbjct: 8213269 gagaaccgtgcaccaatcatctctgatgatagccc 8213303
>ref|XM_544519.2| PREDICTED: Canis familiaris similar to cytidine deaminase (LOC487393), mRNA Length = 823 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 gagaacatcttcgtcgagttc 174 ||||||||||||||||||||| Sbjct: 532 gagaacatcttcgtcgagttc 512
>gb|AC153787.1| Homo sapiens chromosome 2 clone fa0651, complete sequence Length = 40424 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ctagatccagaaggtgccagaagg 95 |||||| ||||||||||||||||| Sbjct: 11561 ctagatgcagaaggtgccagaagg 11538
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gccggatgcggcggagccgt 211 |||||||||||||||||||| Sbjct: 287648 gccggatgcggcggagccgt 287667
>ref|XM_993535.1| PREDICTED: Mus musculus ubiquitin specific peptidase 36 (Usp36), mRNA Length = 5422 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cagaaggtgccagaaggttc 98 |||||||||||||||||||| Sbjct: 4383 cagaaggtgccagaaggttc 4402
>ref|XM_916680.2| PREDICTED: Mus musculus ubiquitin specific peptidase 36, transcript variant 5 (Usp36), mRNA Length = 5422 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cagaaggtgccagaaggttc 98 |||||||||||||||||||| Sbjct: 4383 cagaaggtgccagaaggttc 4402
>ref|XM_126772.6| PREDICTED: Mus musculus ubiquitin specific peptidase 36, transcript variant 1 (Usp36), mRNA Length = 5422 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cagaaggtgccagaaggttc 98 |||||||||||||||||||| Sbjct: 4383 cagaaggtgccagaaggttc 4402
>ref|XM_755972.1| Ustilago maydis 521 hypothetical protein (UM04918.1) partial mRNA Length = 2295 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 gcttcaacgacgtcctccag 306 |||||||||||||||||||| Sbjct: 404 gcttcaacgacgtcctccag 423
>gb|AC124381.4| Mus musculus BAC clone RP24-406E24 from chromosome 15, complete sequence Length = 176561 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 tttgtgatggagcacagagc 386 |||||||||||||||||||| Sbjct: 49288 tttgtgatggagcacagagc 49269
>emb|Z93096.1|HS390B3 Human DNA sequence from clone CTA-390B3 on chromosome 22q12-13, complete sequence Length = 92510 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 tgatggagcacagagctggc 390 |||||||||||||||||||| Sbjct: 10652 tgatggagcacagagctggc 10633
>dbj|AK028915.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732470B18 product:RIKEN cDNA 2700002L06 gene, full insert sequence Length = 3816 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cagaaggtgccagaaggttc 98 |||||||||||||||||||| Sbjct: 2776 cagaaggtgccagaaggttc 2795
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ggaggcgatgcggtcgcggg 247 |||||||||||||||||||| Sbjct: 14047663 ggaggcgatgcggtcgcggg 14047682
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 gtggacgagaaggcggcgcg 149 |||||||||||||||||||| Sbjct: 3034171 gtggacgagaaggcggcgcg 3034190
>gb|AC112228.3| Homo sapiens BAC clone RP13-1027K21 from 2, complete sequence Length = 55818 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ctagatccagaaggtgccagaagg 95 |||||| ||||||||||||||||| Sbjct: 27546 ctagatgcagaaggtgccagaagg 27523
>dbj|AP005732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0014M19 Length = 129270 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ggaggcgatgcggtcgcggg 247 |||||||||||||||||||| Sbjct: 26598 ggaggcgatgcggtcgcggg 26617
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tggacgagaaggcggcgcgg 150 |||||||||||||||||||| Sbjct: 20410 tggacgagaaggcggcgcgg 20429
>emb|AL591404.4| Mouse DNA sequence from clone RP23-394O9 on chromosome 11, complete sequence Length = 203613 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 cagaaggtgccagaaggttc 98 |||||||||||||||||||| Sbjct: 48099 cagaaggtgccagaaggttc 48080
>emb|AL672269.15| Mouse DNA sequence from clone RP23-57F11 on chromosome 11, complete sequence Length = 169954 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 acgtcctccagaaggccatc 315 |||||||||||||||||||| Sbjct: 161881 acgtcctccagaaggccatc 161900 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,435,913 Number of Sequences: 3902068 Number of extensions: 2435913 Number of successful extensions: 43490 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43153 Number of HSP's gapped (non-prelim): 331 length of query: 426 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 404 effective length of database: 17,147,199,772 effective search space: 6927468707888 effective search space used: 6927468707888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)