ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl38e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NFAC4_HUMAN (Q14934) Nuclear factor of activated T-cells, cytopl... 32 0.76
2Y1163_HAEIN (Q57252) Protein HI1163 32 0.76
3YDIJ_ECOLI (P77748) Hypothetical protein ydiJ 32 0.76
4ZFNL5_ARATH (Q5RJC5) Zinc finger CCCH type domain-containing pro... 30 2.9
5UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (E... 30 2.9
6PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2... 30 2.9
7PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2... 30 2.9
8KAPR_ASPFU (Q96UX3) cAMP-dependent protein kinase regulatory sub... 30 2.9
9BRO1_EMENI (Q6XPR4) Vacuolar protein-sorting protein bro1 (BRO d... 29 4.9
10ADRB1_FELCA (Q9TST6) Beta-1 adrenergic receptor (Beta-1 adrenoce... 29 4.9
11CT055_MOUSE (Q8R184) Protein C20orf55 homolog 28 6.4
12LSB6_YEAST (P42951) Phosphatidylinositol 4-kinase LSB6 (EC 2.7.1... 28 8.3
13QUEA_RHOS4 (Q3J252) S-adenosylmethionine:tRNA ribosyltransferase... 28 8.3
14DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-re... 28 8.3

>NFAC4_HUMAN (Q14934) Nuclear factor of activated T-cells, cytoplasmic 4|
           (NF-ATc4) (NFATc4) (T cell transcription factor NFAT3)
           (NF-AT3)
          Length = 902

 Score = 31.6 bits (70), Expect = 0.76
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
 Frame = +1

Query: 136 PQPGGSSLHSPGFLLQPPDLARSTAIC------FRRAAAR---GWPLAAVDPRSAGTPSW 288
           P PG SSL S  F     D A   A C         AA+R   G PL +  PR++  P W
Sbjct: 169 PSPGSSSLSSWSFFSDASDEAALYAACDEVESELNEAASRFGLGSPLPS--PRASPRP-W 225

Query: 289 SPPVPW 306
           +P  PW
Sbjct: 226 TPEDPW 231



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>Y1163_HAEIN (Q57252) Protein HI1163|
          Length = 1027

 Score = 31.6 bits (70), Expect = 0.76
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 139 QPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDP 264
           +P G ++H  GFL +    A++ A    R A  G PL  VDP
Sbjct: 826 KPNGKAMHIKGFLKRFSKTAQNQAEFLNRMAKLGIPLVGVDP 867



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>YDIJ_ECOLI (P77748) Hypothetical protein ydiJ|
          Length = 1018

 Score = 31.6 bits (70), Expect = 0.76
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 142 PGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDP 264
           P G + H  GFL +    A+ TA    R A  G P+  VDP
Sbjct: 826 PNGKAQHIKGFLNRFAKTAKKTADFLNRMAKLGMPMVGVDP 866



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>ZFNL5_ARATH (Q5RJC5) Zinc finger CCCH type domain-containing protein ZFN-like 5|
          Length = 435

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 283 SWSPPVPWQSXXXXXXXXXXXXXSGAGPAVPSLWRSTRGVGP 408
           S+SP  P Q+             +G  P +PS++  +RGV P
Sbjct: 240 SFSPKAPSQASSTSWSSTRHMNGTGTAPFIPSMFPHSRGVTP 281



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>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 51)
           (Ubiquitin-specific-processing protease 51)
           (Deubiquitinating enzyme 51)
          Length = 711

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +1

Query: 121 KP*PRPQPGGSSLHSPGFLLQPPDLAR 201
           KP PRPQP   S   PG    PP  AR
Sbjct: 103 KPRPRPQPRARSRSQPGLSAPPPPPAR 129



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>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 443

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 305 QGTGGLQEG---VPADLGSTAARGHPLAAARRKQMAVERARSGG 183
           QG GG +E    V  D G+  + GHPL+ A +   A+     GG
Sbjct: 29  QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72



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>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 305 QGTGGLQEG---VPADLGSTAARGHPLAAARRKQMAVERARSGG 183
           QG GG +E    V  D G+  + GHPL+ A +   A+     GG
Sbjct: 29  QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72



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>KAPR_ASPFU (Q96UX3) cAMP-dependent protein kinase regulatory subunit (PKA|
           regulatory subunit)
          Length = 413

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
 Frame = +1

Query: 148 GSSLHSPGFLLQPPDLARSTAICFRRAAARGWP------------LAAVDPRSAGTPSWS 291
           G      G  ++PP  AR TA     AA +G+P              +++P SAG+ SW+
Sbjct: 85  GQGSEGQGEHVEPPGGARPTA-----AANQGFPNNYALGRRTSVSAESLNPTSAGSDSWT 139

Query: 292 PP 297
           PP
Sbjct: 140 PP 141



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>BRO1_EMENI (Q6XPR4) Vacuolar protein-sorting protein bro1 (BRO|
           domain-containing protein 1)
          Length = 1000

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +1

Query: 115 SAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWP-LAAVDPRSAGTPSWS 291
           S +P P   P GSS   P     PP   ++ A     A  +  P  A   P+  GTP   
Sbjct: 791 STEPKPPSVPPGSSTAGPAKAKSPPPPVKAPAYPTNIAPPKASPHFAPTVPQQHGTPVSH 850

Query: 292 PPVPW 306
            P P+
Sbjct: 851 SPAPY 855



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>ADRB1_FELCA (Q9TST6) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 474

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +1

Query: 151 SSLHSPGFLLQPPDLARS--TAICFRRAAARGWPLAAVD-PRSAG-TPSWSPP 297
           +S  +P    + PD  ++    +CF R AARG   AA D PR++G  P   PP
Sbjct: 365 NSAFNPIIYCRSPDFRKAFQRLLCFARRAARGGHAAAGDRPRASGCLPGTRPP 417



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>CT055_MOUSE (Q8R184) Protein C20orf55 homolog|
          Length = 296

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = +1

Query: 106 PFHSAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAIC---FRRAAA---RGWPLAAVDPR 267
           P  ++   P P PG ++  SPG   +PP L RS +     F RAAA   R +    +DP 
Sbjct: 159 PLPASPARPYPSPGTTTTSSPG---RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPE 215

Query: 268 SA 273
            A
Sbjct: 216 EA 217



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>LSB6_YEAST (P42951) Phosphatidylinositol 4-kinase LSB6 (EC 2.7.1.67)|
           (PI4-kinase) (PtdIns-4-kinase)
          Length = 607

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 224 RRKQMAVERARSGGWRRKPGEWRLDPPGW 138
           R K  A++   S  W+  P EWRL P GW
Sbjct: 406 RLKLAAIDNGLSFPWKH-PDEWRLYPYGW 433



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>QUEA_RHOS4 (Q3J252) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 346

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
 Frame = -3

Query: 278 VPADLGSTAARGHPLAAARRKQMAVERARSGGWRR--------KPGE 162
           +PA L  T  RG   A AR +   +E A +GGWR         KPGE
Sbjct: 62  IPARLTGTRTRGE--AEARVEVTLMEPAAAGGWRAMAKPLRKLKPGE 106



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>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 21/66 (31%), Positives = 25/66 (37%)
 Frame = +1

Query: 106 PFHSAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPS 285
           P  +A P P P PGG+ +  P     PP L  S  +        G  L    P   G P 
Sbjct: 666 PGATAIPPPPPLPGGTGIPPP-----PPPLPGSVGVPPPPPLPGGPGLPPPPPPFPGAPG 720

Query: 286 WSPPVP 303
             PP P
Sbjct: 721 IPPPPP 726


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,535,689
Number of Sequences: 219361
Number of extensions: 775667
Number of successful extensions: 2783
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2779
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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