ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl38e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor is... 184 1e-43
2gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor i... 184 1e-43
3ref|XM_473052.1| Oryza sativa (japonica cultivar-group), predic... 42 0.92
4emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 0.92
5gb|AY224450.1| Oryza sativa (japonica cultivar-group) isolate 23... 42 0.92
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
7emb|AM156961.1| Oryza glaberrima mRNA for putative eukaryotic tr... 42 0.92
8emb|AM156960.1| Oryza glaberrima mRNA for putative eukaryotic tr... 42 0.92
9emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic tr... 42 0.92
10emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for pu... 42 0.92
11emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for pu... 42 0.92
12ref|XM_481223.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
13ref|XM_477258.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
14gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
15gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
16gb|AC096707.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
17gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, comp... 40 3.7
18gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, com... 40 3.7
19gb|AC010621.7| Homo sapiens chromosome 5 clone CTD-2034J20, comp... 40 3.7
20gb|AF400075.1|AF400075 Homo sapiens coagulation factor II (throm... 40 3.7
21dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
22dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
23dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
24dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
25dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
26dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
27dbj|AP005468.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
28dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
29dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
30dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
31dbj|AP006266.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
32dbj|AP004344.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
33dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
34gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 3.7
35gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
36emb|AL731740.4|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb... 40 3.7
37emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa... 40 3.7
38emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa... 40 3.7
39gb|AC142266.3| Mus musculus BAC clone RP24-380K14 from 14, compl... 40 3.7
40gb|AC114962.2| Homo sapiens chromosome 5 clone RP11-206N2, compl... 40 3.7 
>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA
           sequence
          Length = 2863

 Score =  184 bits (93), Expect = 1e-43
 Identities = 111/117 (94%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 132
           |||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1   ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60

                                                                    
Query: 133 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 189
           |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 117



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 222 cgcctctttgcccccgccttcgccgtcgccgactgagactccggagacttcctccgccc 280
           |||||||| |||||||||||||| ||||||| ||  | |||||| ||||||||||||||
Sbjct: 150 cgcctcttcgcccccgccttcgcggtcgccgcctccggctccggcgacttcctccgccc 208
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>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit
           mRNA, complete cds
          Length = 2887

 Score =  184 bits (93), Expect = 1e-43
 Identities = 111/117 (94%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 132
           |||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1   ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60

                                                                    
Query: 133 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 189
           |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 117



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 222 cgcctctttgcccccgccttcgccgtcgccgactgagactccggagacttcctccgccc 280
           |||||||| |||||||||||||| ||||||| ||  | |||||| ||||||||||||||
Sbjct: 150 cgcctcttcgcccccgccttcgcggtcgccgcctccggctccggcgacttcctccgccc 208
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>ref|XM_473052.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2382

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 222 cgcctctttgcccccgccttcgccgtcgccgactgagactccggagacttcctccgc 278
           ||||||||  ||||||||||||||| ||||| ||  | |||||| ||||| ||||||
Sbjct: 70  cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgc 126
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                      
Query: 222   cgcctctttgcccccgccttcgccgtcgccgactgagactccggagacttcctccgc 278
             ||||||||  ||||||||||||||| ||||| ||  | |||||| ||||| ||||||
Sbjct: 47821 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgc 47765
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>gb|AY224450.1| Oryza sativa (japonica cultivar-group) isolate 23225 eukaryotic
           initiation factor-like protein mRNA, complete cds
          Length = 2379

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 222 cgcctctttgcccccgccttcgccgtcgccgactgagactccggagacttcctccgc 278
           ||||||||  ||||||||||||||| ||||| ||  | |||||| ||||| ||||||
Sbjct: 70  cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgc 126
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                         
Query: 222      cgcctctttgcccccgccttcgccgtcgccgactgagactccggagacttcctccgc 278
                ||||||||  ||||||||||||||| ||||| ||  | |||||| ||||| ||||||
Sbjct: 24927236 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgc 24927180
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>emb|AM156961.1| Oryza glaberrima mRNA for putative eukaryotic translation
           initiation factor 4 gamma (eif(iso)4g gene), cultivar
           Tog5672
          Length = 2558

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 222 cgcctctttgcccccgccttcgccgtcgccgactgagactccggagacttcctccgc 278
           ||||||||  ||||||||||||||| ||||| ||  | |||||| ||||| ||||||
Sbjct: 183 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgc 239
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>emb|AM156960.1| Oryza glaberrima mRNA for putative eukaryotic translation
           initiation factor 4 gamma (eif(iso)4g gene), cultivar
           Tog5673
          Length = 2533

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 222 cgcctctttgcccccgccttcgccgtcgccgactgagactccggagacttcctccgc 278
           ||||||||  ||||||||||||||| ||||| ||  | |||||| ||||| ||||||
Sbjct: 183 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgc 239
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>emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic translation
           initiation factor 4 gamma (eif(iso)4g gene), cultivar
           Tog5681
          Length = 2699

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 222 cgcctctttgcccccgccttcgccgtcgccgactgagactccggagacttcctccgc 278
           ||||||||  ||||||||||||||| ||||| ||  | |||||| ||||| ||||||
Sbjct: 183 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgc 239
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>emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
           translation initiation factor 4 gamma (eif(iso)4g gene),
           cultivar Gigante
          Length = 2599

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 222 cgcctctttgcccccgccttcgccgtcgccgactgagactccggagacttcctccgc 278
           ||||||||  ||||||||||||||| ||||| ||  | |||||| ||||| ||||||
Sbjct: 80  cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgc 136
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>emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
           translation initiation factor 4 gamma (eif(iso)4g gene),
           cultivar IR64
          Length = 2599

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 222 cgcctctttgcccccgccttcgccgtcgccgactgagactccggagacttcctccgc 278
           ||||||||  ||||||||||||||| ||||| ||  | |||||| ||||| ||||||
Sbjct: 73  cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgc 129
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>ref|XM_481223.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 606

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 237 gccttcgccgtcgccgactg 256
           ||||||||||||||||||||
Sbjct: 225 gccttcgccgtcgccgactg 206
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>ref|XM_477258.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 945

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 237 gccttcgccgtcgccgactg 256
           ||||||||||||||||||||
Sbjct: 232 gccttcgccgtcgccgactg 251
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>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10,
             complete sequence
          Length = 149870

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   gccttcgccgtcgccgactg 256
             ||||||||||||||||||||
Sbjct: 73492 gccttcgccgtcgccgactg 73511
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>gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OJ1057_C01, complete sequence
          Length = 142752

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   gccttcgccgtcgccgactg 256
             ||||||||||||||||||||
Sbjct: 10043 gccttcgccgtcgccgactg 10062
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>gb|AC096707.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1583_A05,
              complete sequence
          Length = 126987

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    gccttcgccgtcgccgactg 256
              ||||||||||||||||||||
Sbjct: 104196 gccttcgccgtcgccgactg 104215
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>gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, complete sequence
          Length = 147107

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   gacagaccagccagtgatca 180
             ||||||||||||||||||||
Sbjct: 15395 gacagaccagccagtgatca 15376
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>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence
          Length = 142102

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    gacagaccagccagtgatca 180
              ||||||||||||||||||||
Sbjct: 106152 gacagaccagccagtgatca 106133
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>gb|AC010621.7| Homo sapiens chromosome 5 clone CTD-2034J20, complete sequence
          Length = 52368

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   actccggagacttcctccgc 278
             ||||||||||||||||||||
Sbjct: 30530 actccggagacttcctccgc 30549
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>gb|AF400075.1|AF400075 Homo sapiens coagulation factor II (thrombin) receptor-like 1 (F2RL1)
            gene, complete cds
          Length = 18351

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  actccggagacttcctccgc 278
            ||||||||||||||||||||
Sbjct: 3105 actccggagacttcctccgc 3124
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 237      gccttcgccgtcgccgactg 256
                ||||||||||||||||||||
Sbjct: 25895964 gccttcgccgtcgccgactg 25895945



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 237      gccttcgccgtcgccgactg 256
                ||||||||||||||||||||
Sbjct: 18832469 gccttcgccgtcgccgactg 18832450



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 237     gccttcgccgtcgccgactg 256
               ||||||||||||||||||||
Sbjct: 6898679 gccttcgccgtcgccgactg 6898698
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 237      gccttcgccgtcgccgactg 256
                ||||||||||||||||||||
Sbjct: 16188366 gccttcgccgtcgccgactg 16188385



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 237      gccttcgccgtcgccgactg 256
                ||||||||||||||||||||
Sbjct: 10723107 gccttcgccgtcgccgactg 10723126
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 237      gccttcgccgtcgccgactg 256
                ||||||||||||||||||||
Sbjct: 10725561 gccttcgccgtcgccgactg 10725580
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 237     gccttcgccgtcgccgactg 256
               ||||||||||||||||||||
Sbjct: 8206648 gccttcgccgtcgccgactg 8206667
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 237      gccttcgccgtcgccgactg 256
                ||||||||||||||||||||
Sbjct: 18629502 gccttcgccgtcgccgactg 18629483
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 237      gccttcgccgtcgccgactg 256
                ||||||||||||||||||||
Sbjct: 20075167 gccttcgccgtcgccgactg 20075186



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 237      gccttcgccgtcgccgactg 256
                ||||||||||||||||||||
Sbjct: 13326580 gccttcgccgtcgccgactg 13326599
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>dbj|AP005468.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0020P04
          Length = 153894

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   gccttcgccgtcgccgactg 256
             ||||||||||||||||||||
Sbjct: 81605 gccttcgccgtcgccgactg 81586
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>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0085I16
          Length = 141701

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   gccttcgccgtcgccgactg 256
             ||||||||||||||||||||
Sbjct: 59725 gccttcgccgtcgccgactg 59744
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>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1344_B01
          Length = 170912

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  gccttcgccgtcgccgactg 256
            ||||||||||||||||||||
Sbjct: 4882 gccttcgccgtcgccgactg 4901
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>dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0556H01
          Length = 149800

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   gccttcgccgtcgccgactg 256
             ||||||||||||||||||||
Sbjct: 92967 gccttcgccgtcgccgactg 92986
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>dbj|AP006266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0003K21
          Length = 158810

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   gccttcgccgtcgccgactg 256
             ||||||||||||||||||||
Sbjct: 89671 gccttcgccgtcgccgactg 89690
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>dbj|AP004344.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0639B07
          Length = 138780

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  gccttcgccgtcgccgactg 256
            ||||||||||||||||||||
Sbjct: 1760 gccttcgccgtcgccgactg 1779
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>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0091M20
          Length = 132976

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   gccttcgccgtcgccgactg 256
             ||||||||||||||||||||
Sbjct: 22693 gccttcgccgtcgccgactg 22712
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 229     ttgcccccgccttcgccgtcgccg 252
               |||||| |||||||||||||||||
Sbjct: 1991866 ttgccctcgccttcgccgtcgccg 1991889
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 237      gccttcgccgtcgccgactg 256
                ||||||||||||||||||||
Sbjct: 25824140 gccttcgccgtcgccgactg 25824121



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 237      gccttcgccgtcgccgactg 256
                ||||||||||||||||||||
Sbjct: 18758696 gccttcgccgtcgccgactg 18758677



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 237     gccttcgccgtcgccgactg 256
               ||||||||||||||||||||
Sbjct: 6898558 gccttcgccgtcgccgactg 6898577
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>emb|AL731740.4|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb0001P19 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144563

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   gccttcgccgtcgccgactg 256
             ||||||||||||||||||||
Sbjct: 63359 gccttcgccgtcgccgactg 63340
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>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 153064

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    gccttcgccgtcgccgactg 256
              ||||||||||||||||||||
Sbjct: 137910 gccttcgccgtcgccgactg 137929
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>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 137492

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    gccttcgccgtcgccgactg 256
              ||||||||||||||||||||
Sbjct: 117415 gccttcgccgtcgccgactg 117396
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>gb|AC142266.3| Mus musculus BAC clone RP24-380K14 from 14, complete sequence
          Length = 185704

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   ctgagactccggagacttcc 273
             ||||||||||||||||||||
Sbjct: 56524 ctgagactccggagacttcc 56505
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>gb|AC114962.2| Homo sapiens chromosome 5 clone RP11-206N2, complete sequence
          Length = 107278

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    actccggagacttcctccgc 278
              ||||||||||||||||||||
Sbjct: 100588 actccggagacttcctccgc 100569


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,352,957
Number of Sequences: 3902068
Number of extensions: 1352957
Number of successful extensions: 25159
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24710
Number of HSP's gapped (non-prelim): 449
length of query: 280
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 258
effective length of database: 17,147,199,772
effective search space: 4423977541176
effective search space used: 4423977541176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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