ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl38d12 |
|---|---|
| Clone Library Name | barley_pub |
>SSM4_YEAST (P40318) Protein SSM4| Length = 1319 Score = 75.1 bits (183), Expect = 8e-14 Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 8/110 (7%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSD--------SRQCEVCKHAFS 193 CRICR +++PL +PC C GSIK++H+ CLL+W + +C++C + Sbjct: 39 CRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEWVASKNIDISKPGADVKCDICHYPIQ 98 Query: 194 FSPVYAQNAPSRLPFQELVFGVGMKACHVFQFVLRLAFVLSVWLMIIPFI 343 F +YA+N P ++PF L+ + + L + ++++ +P + Sbjct: 99 FKTIYAENMPEKIPFSLLLSKSILTFFEKARLALTIGLAAVLYIIGVPLV 148
>STATB_CAEEL (Q20977) Signal transducer and activator of transcription b (Zinc| finger protein STAT-B) Length = 966 Score = 50.8 bits (120), Expect = 2e-06 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCKHAFS-----FS 199 +CRIC+ D + PC C+G++ VH++CL +W + S+ + CE+CK ++ F Sbjct: 51 ICRICQMHEGD---MVRPCDCAGTMGDVHEECLTKWVNMSNKKTCEICKSEYTNSGAQFK 107 Query: 200 PVYAQNAP 223 P+ + P Sbjct: 108 PIKQWSKP 115
>MARH4_HUMAN (Q9P2E8) Membrane-associated RING finger protein 4| (Membrane-associated RING-CH protein IV) (MARCH-IV) (RING finger protein 174) Length = 410 Score = 50.8 bits (120), Expect = 2e-06 Identities = 32/108 (29%), Positives = 53/108 (49%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCKHAFSFSPVYAQ 214 +CRIC +G ++ L PC C GS+K HQ CL++W CE+C + + V A Sbjct: 162 LCRICF-QGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYH---VIAI 217 Query: 215 NAPSRLPFQELVFGVGMKACHVFQFVLRLAFVLSVWLMIIPFITYWIW 358 + + L +Q + V K +++A + L +I I++ IW Sbjct: 218 STKNPLQWQAISLTVIEK--------VQVAAAILGSLFLIASISWLIW 257
>MARH4_MOUSE (Q80TE3) Membrane-associated RING finger protein 4| (Membrane-associated RING-CH protein IV) (MARCH-IV) Length = 408 Score = 50.4 bits (119), Expect = 2e-06 Identities = 21/61 (34%), Positives = 33/61 (54%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCKHAFSFSPVYAQ 214 +CRIC +G ++ L PC C GS+K HQ CL++W CE+C + + + + Sbjct: 161 LCRICF-QGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTK 219 Query: 215 N 217 N Sbjct: 220 N 220
>MARH3_MOUSE (Q8BRX9) Membrane-associated RING finger protein 3| (Membrane-associated RING-CH protein III) (MARCH-III) Length = 218 Score = 48.9 bits (115), Expect = 6e-06 Identities = 19/53 (35%), Positives = 31/53 (58%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCKHAFS 193 +CRIC + G + L PC C+G++ +H+ CL W S++ CE+C F+ Sbjct: 70 MCRIC-HEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFA 121
>MARH3_RAT (Q5XIE5) Membrane-associated RING finger protein 3| (Membrane-associated RING-CH protein III) (MARCH-III) Length = 253 Score = 48.9 bits (115), Expect = 6e-06 Identities = 19/53 (35%), Positives = 31/53 (58%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCKHAFS 193 +CRIC + G + L PC C+G++ +H+ CL W S++ CE+C F+ Sbjct: 70 MCRIC-HEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFA 121
>MARH3_HUMAN (Q86UD3) Membrane-associated RING finger protein 3| (Membrane-associated RING-CH protein III) (MARCH-III) (RING finger protein 173) Length = 253 Score = 48.9 bits (115), Expect = 6e-06 Identities = 19/53 (35%), Positives = 31/53 (58%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCKHAFS 193 +CRIC + G + L PC C+G++ +H+ CL W S++ CE+C F+ Sbjct: 70 MCRIC-HEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFA 121
>MARH2_MOUSE (Q99M02) Membrane-associated RING finger protein 2| (Membrane-associated RING-CH protein II) (MARCH-II) Length = 246 Score = 47.8 bits (112), Expect = 1e-05 Identities = 20/52 (38%), Positives = 31/52 (59%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCKHAFS 193 CRIC + E+ L PC C+G++ VH+ CL +W S++ CE+C F+ Sbjct: 64 CRICHEGANGENLLS-PCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFA 114
>MARH2_HUMAN (Q9P0N8) Membrane-associated RING finger protein 2| (Membrane-associated RING-CH protein II) (MARCH-II) (RING finger protein 172) Length = 246 Score = 46.6 bits (109), Expect = 3e-05 Identities = 20/52 (38%), Positives = 31/52 (59%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCKHAFS 193 CRIC + G + L PC C+G++ VH+ CL +W S++ CE+C F+ Sbjct: 64 CRIC-HEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFA 114
>VC07_SWPVK (P32225) Hypothetical protein C7| Length = 155 Score = 46.2 bits (108), Expect = 4e-05 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 2/99 (2%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCKHAFSFSPVYAQ 214 VC IC+ DD + C C K VH +C+ +W +S R C++C ++ V Sbjct: 4 VCWICK---DDYSIEKNYCNCKNEYKVVHDECMKKWIQYSRERSCKLCNKEYNIISV--- 57 Query: 215 NAPSRLPFQELVFGVG--MKACHVFQFVLRLAFVLSVWL 325 R PF + VF + K+ ++ + F++S+ L Sbjct: 58 ----RKPFSQWVFSIKDCKKSAILYATLFLCTFIISLVL 92
>MIR2_HHV8 (P90489) Modulator of immune recognition 2 (EC 6.3.2.-) (MIR2)| (IE1A protein) (ORF K5) Length = 256 Score = 42.4 bits (98), Expect = 6e-04 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCK 181 +C ICR +E +PCAC+G + VH CL W S + C++C+ Sbjct: 14 ICWICREEVGNEGI--HPCACTGELDVVHPQCLSTWLTVSRNTACQMCR 60
>MIR1_MHV68 (O41933) Modulator of immune recognition 1 homolog (EC 6.3.2.-)| (MK3) (ORF K3) Length = 201 Score = 42.4 bits (98), Expect = 6e-04 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 7/105 (6%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCKHAFSFSPVYAQN 217 C IC E PL+ C C GS HQDCL W + S + C +C +S Sbjct: 8 CWICHQ---PEGPLKRFCGCKGSCAVSHQDCLRGWLETSRRQTCALCGTPYSMK------ 58 Query: 218 APSRLPFQELVFG-----VGMKACHVFQFV--LRLAFVLSVWLMI 331 P +E +G M+AC + L V+ WL++ Sbjct: 59 -WKTKPLREWTWGEEEVLAAMEACLPLVLIPLAVLMIVMGTWLLV 102
>MIR1_HHV8 (P90495) Modulator of immune recognition 1 (EC 6.3.2.-) (MIR1)| (IE1B protein) (ORF K3) Length = 333 Score = 40.4 bits (93), Expect = 0.002 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 9/109 (8%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCKHAFS----FSP 202 VC IC +E C C+G ++ VH+ CL W S + C++C ++ + P Sbjct: 8 VCWICNEELGNER--FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNTRVVWRP 65 Query: 203 VYAQNAPSRLPFQELVFGVGMKACHVFQFVLR-----LAFVLSVWLMII 334 + RL +QE G++ VF F++ LA VWL I+ Sbjct: 66 LREMTLLPRLTYQE-----GLELI-VFIFIMTLGAAGLAAATWVWLYIV 108
>VIE1_BHV4D (P27426) 32.7 kDa immediate early protein IE1| Length = 285 Score = 40.0 bits (92), Expect = 0.003 Identities = 17/48 (35%), Positives = 28/48 (58%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCK 181 C ICR+ G+ RY C C G +++ H++CL W S ++C+ C+ Sbjct: 132 CWICRD-GESLPEARY-CNCYGDLQYCHEECLKTWISMSGEKKCKFCQ 177
>ATL4D_ARATH (Q9M0R4) Putative RING-H2 finger protein ATL4D precursor| Length = 357 Score = 32.3 bits (72), Expect = 0.63 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCK 181 C IC +DE PLR+ CS + H +C+ +W S C VC+ Sbjct: 120 CAICLCEFEDEEPLRWMPPCSHTF---HANCIDEW--LSSRSTCPVCR 162
>ATL1H_ARATH (Q9C7I1) Putative RING-H2 finger protein ATL1H precursor| Length = 327 Score = 32.0 bits (71), Expect = 0.82 Identities = 20/61 (32%), Positives = 26/61 (42%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCKHAFSFSPVYAQN 217 C IC N +DE LR CS + H C+ W S C VC+ + P QN Sbjct: 128 CAICLNEFEDEETLRLMPPCSHAF---HASCIDVW--LSSRSTCPVCRASLPPKPGSDQN 182 Query: 218 A 220 + Sbjct: 183 S 183
>ZN337_HUMAN (Q9Y3M9) Zinc finger protein 337| Length = 751 Score = 32.0 bits (71), Expect = 0.82 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = -2 Query: 243 SWKGSLLGAF*A*TGEKE---NACLQTSHWRESLWSGHWRRQS 124 +WKG+LL +GEK N C Q W+ SL HWR S Sbjct: 638 NWKGNLLTHQRTHSGEKPFVCNVCGQGFSWKRSLTRHHWRIHS 680
>NUCM_ACACA (Q37384) NADH-ubiquinone oxidoreductase 49 kDa subunit (EC 1.6.5.3)| (EC 1.6.99.3) (NADH dehydrogenase subunit 7) Length = 401 Score = 31.6 bits (70), Expect = 1.1 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%) Frame = +2 Query: 230 LPFQELVFGVGMKACHVFQFVLRLAFVLSVWLMIIPFITYWIWRLTFVRSLGEAXRLF-- 403 + F E V G M A ++ + F L +W I+ F+ + WRL V L R++ Sbjct: 149 MEFYERVSGARMHAAYIRPGGVAQDFPLGLWNDIMQFVEQFFWRLVEVEELLNGNRIWKQ 208 Query: 404 ----LSHVSAQLILSDCLHGF 454 + V+A+ LS HGF Sbjct: 209 RLVDVGIVTAEEALS---HGF 226
>ATL4C_ARATH (Q9M0R5) Putative RING-H2 finger protein ATL4C precursor| Length = 345 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCKHAFSFSP 202 C IC + +D+ LR+ CS + H +C+ W S C VC+ S P Sbjct: 123 CAICLSEFEDQETLRWMPPCSHTF---HANCIDVW--LSSWSTCPVCRANLSLKP 172
>SECY_LACLC (P27148) Preprotein translocase secY subunit| Length = 439 Score = 29.6 bits (65), Expect = 4.1 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Frame = +2 Query: 275 HVFQFVLRLAFVLSVWL---MIIPFITYWIWRLTFVRSLGEAXRLFLSHVSAQLILSDCL 445 +V + ++RLA V S++L IIP +W L + +LG L L V+ Q + L Sbjct: 362 YVSRLLMRLATVGSLFLGLISIIPIAAQNVWGLPKIVALGGTSLLILIQVAIQAVKQ--L 419 Query: 446 HGFLL 460 G+LL Sbjct: 420 EGYLL 424
>COX1_LEITA (P14544) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) Length = 549 Score = 29.6 bits (65), Expect = 4.1 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Frame = +2 Query: 203 VYAQNAPSRLPFQELVFGVGMKAC-HVFQFVLRLAFVLSVWLMIIPFITYWIWRLTFVRS 379 V + SR F + +G+ C +F ++ + MII F Y++ F+ Sbjct: 296 VVGMDVDSRAYFGGVSILIGLPTCVKLFNWIYSFLYTD----MIITFEVYFVIMFIFMFL 351 Query: 380 LGEAXRLFLSHVSAQLILSD 439 +G LFLS+V ++L D Sbjct: 352 IGAVTGLFLSNVGIDIMLHD 371
>RHA1A_ARATH (Q9SUS4) RING-H2 zinc finger protein RHA1a| Length = 159 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/60 (25%), Positives = 25/60 (41%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCKHAFSFSPVYAQN 217 C +C + + + +R C H CL +W + +C VC+H F Y Q+ Sbjct: 86 CTVCLSDFESDDKVRQLPKCG---HVFHHYCLDRWIVDYNKMKCPVCRHRFLPKEKYTQS 142
>ASR1_YEAST (Q06834) Alcohol-sensitive RING finger protein 1| Length = 288 Score = 28.9 bits (63), Expect = 6.9 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWPDHSDSRQCEVCK 181 C IC DD+ ++ C KF H +C+ +W +S + +C +C+ Sbjct: 4 CPICL--ADDQEGEQFGCLNVCGHKF-HLNCIREWHKYSINLKCPICR 48
>HCY2E_RAPTH (P83040) Hemocyanin type 2 unit e (RtH2-e)| Length = 413 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Frame = -1 Query: 331 NHEPD*KNKGKPEDKLEHMACFHPNAKHKFLERQPAWSILSI--DGRERERVFTDLALAG 158 N P K KPED ++ FH H L+ + +ER+RVF L G Sbjct: 265 NLNPTTKEHSKPEDTFDYKGHFHYEYDHLELQGMNVQRLHDYINQQKERDRVFAGFLLEG 324 Query: 157 V 155 + Sbjct: 325 I 325
>SECY_LACLA (P58118) Preprotein translocase secY subunit| Length = 439 Score = 28.5 bits (62), Expect = 9.1 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Frame = +2 Query: 275 HVFQFVLRLAFVLSVWL---MIIPFITYWIWRLTFVRSLGEAXRLFLSHVSAQLILSDCL 445 +V + ++RLA V +++L IIP +W L + +LG L L V+ Q + L Sbjct: 362 YVSRLLMRLATVGALFLGLISIIPIAAQNVWGLPKIVALGGTSLLILIQVAIQAVKQ--L 419 Query: 446 HGFLL 460 G+LL Sbjct: 420 EGYLL 424
>LAMA3_MOUSE (Q61789) Laminin alpha-3 chain precursor (Nicein alpha subunit)| Length = 3333 Score = 28.5 bits (62), Expect = 9.1 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +2 Query: 74 PLRYPCACSGSI-KFVHQDCLLQWPDHSDSRQCEVCK-HAFSFSPV 205 P PC C + + V CL P H+ QCEVC+ ++F+F PV Sbjct: 1305 PYCKPCNCGRRLCEEVTGKCLC--PPHTVRPQCEVCEMNSFNFHPV 1348 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,156,357 Number of Sequences: 219361 Number of extensions: 1015380 Number of successful extensions: 2866 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2785 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2863 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
