Clone Name | bastl38d10 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_186470.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2394 Score = 123 bits (62), Expect = 5e-25 Identities = 104/118 (88%) Strand = Plus / Plus Query: 295 acccgccggtgctcggcacctggctcaactacaccgacttctgctacggcggcgactaca 354 ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 125 acccggcggtgctcggccactggcacaactacaccgacttctgctacggcggcgactaca 184 Query: 355 agaccgcctccgccttggtggagtgctacgaagatagcgtcacgcagctccacatcat 412 ||||| | || || || || |||||||||| || |||||||||||||| |||||||| Sbjct: 185 agaccacgtcggcgttcgtcgagtgctacggcgacagcgtcacgcagctgcacatcat 242
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 123 bits (62), Expect = 5e-25 Identities = 104/118 (88%) Strand = Plus / Plus Query: 295 acccgccggtgctcggcacctggctcaactacaccgacttctgctacggcggcgactaca 354 ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 3616247 acccggcggtgctcggccactggcacaactacaccgacttctgctacggcggcgactaca 3616306 Query: 355 agaccgcctccgccttggtggagtgctacgaagatagcgtcacgcagctccacatcat 412 ||||| | || || || || |||||||||| || |||||||||||||| |||||||| Sbjct: 3616307 agaccacgtcggcgttcgtcgagtgctacggcgacagcgtcacgcagctgcacatcat 3616364
>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1641_C04 Length = 134367 Score = 123 bits (62), Expect = 5e-25 Identities = 104/118 (88%) Strand = Plus / Plus Query: 295 acccgccggtgctcggcacctggctcaactacaccgacttctgctacggcggcgactaca 354 ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 85564 acccggcggtgctcggccactggcacaactacaccgacttctgctacggcggcgactaca 85623 Query: 355 agaccgcctccgccttggtggagtgctacgaagatagcgtcacgcagctccacatcat 412 ||||| | || || || || |||||||||| || |||||||||||||| |||||||| Sbjct: 85624 agaccacgtcggcgttcgtcgagtgctacggcgacagcgtcacgcagctgcacatcat 85681
>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0039H02 Length = 169162 Score = 123 bits (62), Expect = 5e-25 Identities = 104/118 (88%) Strand = Plus / Plus Query: 295 acccgccggtgctcggcacctggctcaactacaccgacttctgctacggcggcgactaca 354 ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 154197 acccggcggtgctcggccactggcacaactacaccgacttctgctacggcggcgactaca 154256 Query: 355 agaccgcctccgccttggtggagtgctacgaagatagcgtcacgcagctccacatcat 412 ||||| | || || || || |||||||||| || |||||||||||||| |||||||| Sbjct: 154257 agaccacgtcggcgttcgtcgagtgctacggcgacagcgtcacgcagctgcacatcat 154314
>gb|AY332473.1| Oryza sativa (japonica cultivar-group) transmembrane protein kinase (PK2) mRNA, complete cds Length = 2690 Score = 115 bits (58), Expect = 1e-22 Identities = 103/118 (87%) Strand = Plus / Plus Query: 295 acccgccggtgctcggcacctggctcaactacaccgacttctgctacggcggcgactaca 354 ||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 241 acccggcggagctcggccactggcacaactacaccgacttctgctacggcggcgactaca 300 Query: 355 agaccgcctccgccttggtggagtgctacgaagatagcgtcacgcagctccacatcat 412 ||||| | || || || || |||||||||| || |||||||||||||| |||||||| Sbjct: 301 agaccacgtcggcgttcgtcgagtgctacggcgacagcgtcacgcagctgcacatcat 358
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 gctacggcggcgactacaaga 357 ||||||||||||||||||||| Sbjct: 800994 gctacggcggcgactacaaga 800974
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 ggcggcgactacaagaccgc 361 |||||||||||||||||||| Sbjct: 6652061 ggcggcgactacaagaccgc 6652080 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,534,497 Number of Sequences: 3902068 Number of extensions: 3534497 Number of successful extensions: 64869 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64760 Number of HSP's gapped (non-prelim): 109 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)