ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38d05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466491.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3447 Score = 260 bits (131), Expect = 3e-66 Identities = 266/311 (85%) Strand = Plus / Plus Query: 118 tcgccggcgataaagcctatcggcaaatcagcggtgcaccggatttgctccggccaagtc 177 |||||||||||| ||| |||||||| || |||||||||||||| ||||||||||| ||| Sbjct: 78 tcgccggcgatacggccgatcggcaagtcggcggtgcaccggatctgctccggccaggtc 137 Query: 178 atcttcgacctctcgtccgcagtgaaggagctcgtggagaacagccccgacgccggcgcc 237 |||||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||| Sbjct: 138 atcttcgacctctcctccgccgtcaaggagctcgtcgagaacagcctcgacgccggcgcc 197 Query: 238 accaccgtcgaggtcggcctcaaggcctacggtgaggagtggttcaaggtcgccgataac 297 ||||||||||||||| |||| ||||||| ||||| | |||| |||||||| ||| Sbjct: 198 accaccgtcgaggtcaccctccgctcctacggcgaggactccttcaccgtcgccgacaac 257 Query: 298 ggcagcggcatctcgcccagcaatttccaggcgcttgctctaaagcatcacacgtccaag 357 |||| ||||||||| |||| ||||||||||||||| ||||| ||||| ||||| |||||| Sbjct: 258 ggcaccggcatctcccccaccaatttccaggcgctcgctctgaagcaccacacctccaag 317 Query: 358 atatcggatttctccgatctcaactccgtggtcaccttcgggttccggggggaggcgttg 417 || ||||| ||| ||| ||| |||||| | ||||||||||||||| ||||||||| | Sbjct: 318 atctcggacttcggcgacctcgcctccgtcgccaccttcgggttccgcggggaggcgctc 377 Query: 418 agctccctctg 428 ||||| ||||| Sbjct: 378 agctcgctctg 388
>dbj|AK102601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098M13, full insert sequence Length = 3447 Score = 260 bits (131), Expect = 3e-66 Identities = 266/311 (85%) Strand = Plus / Plus Query: 118 tcgccggcgataaagcctatcggcaaatcagcggtgcaccggatttgctccggccaagtc 177 |||||||||||| ||| |||||||| || |||||||||||||| ||||||||||| ||| Sbjct: 78 tcgccggcgatacggccgatcggcaagtcggcggtgcaccggatctgctccggccaggtc 137 Query: 178 atcttcgacctctcgtccgcagtgaaggagctcgtggagaacagccccgacgccggcgcc 237 |||||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||| Sbjct: 138 atcttcgacctctcctccgccgtcaaggagctcgtcgagaacagcctcgacgccggcgcc 197 Query: 238 accaccgtcgaggtcggcctcaaggcctacggtgaggagtggttcaaggtcgccgataac 297 ||||||||||||||| |||| ||||||| ||||| | |||| |||||||| ||| Sbjct: 198 accaccgtcgaggtcaccctccgctcctacggcgaggactccttcaccgtcgccgacaac 257 Query: 298 ggcagcggcatctcgcccagcaatttccaggcgcttgctctaaagcatcacacgtccaag 357 |||| ||||||||| |||| ||||||||||||||| ||||| ||||| ||||| |||||| Sbjct: 258 ggcaccggcatctcccccaccaatttccaggcgctcgctctgaagcaccacacctccaag 317 Query: 358 atatcggatttctccgatctcaactccgtggtcaccttcgggttccggggggaggcgttg 417 || ||||| ||| ||| ||| |||||| | ||||||||||||||| ||||||||| | Sbjct: 318 atctcggacttcggcgacctcgcctccgtcgccaccttcgggttccgcggggaggcgctc 377 Query: 418 agctccctctg 428 ||||| ||||| Sbjct: 378 agctcgctctg 388
>dbj|AK073685.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060I11, full insert sequence Length = 1518 Score = 260 bits (131), Expect = 3e-66 Identities = 266/311 (85%) Strand = Plus / Plus Query: 118 tcgccggcgataaagcctatcggcaaatcagcggtgcaccggatttgctccggccaagtc 177 |||||||||||| ||| |||||||| || |||||||||||||| ||||||||||| ||| Sbjct: 80 tcgccggcgatacggccgatcggcaagtcggcggtgcaccggatctgctccggccaggtc 139 Query: 178 atcttcgacctctcgtccgcagtgaaggagctcgtggagaacagccccgacgccggcgcc 237 |||||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||| Sbjct: 140 atcttcgacctctcctccgccgtcaaggagctcgtcgagaacagcctcgacgccggcgcc 199 Query: 238 accaccgtcgaggtcggcctcaaggcctacggtgaggagtggttcaaggtcgccgataac 297 ||||||||||||||| |||| ||||||| ||||| | |||| |||||||| ||| Sbjct: 200 accaccgtcgaggtcaccctccgctcctacggcgaggactccttcaccgtcgccgacaac 259 Query: 298 ggcagcggcatctcgcccagcaatttccaggcgcttgctctaaagcatcacacgtccaag 357 |||| ||||||||| |||| ||||||||||||||| ||||| ||||| ||||| |||||| Sbjct: 260 ggcaccggcatctcccccaccaatttccaggcgctcgctctgaagcaccacacctccaag 319 Query: 358 atatcggatttctccgatctcaactccgtggtcaccttcgggttccggggggaggcgttg 417 || ||||| ||| ||| ||| |||||| | ||||||||||||||| ||||||||| | Sbjct: 320 atctcggacttcggcgacctcgcctccgtcgccaccttcgggttccgcggggaggcgctc 379 Query: 418 agctccctctg 428 ||||| ||||| Sbjct: 380 agctcgctctg 390
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 198 bits (100), Expect = 1e-47 Identities = 184/212 (86%) Strand = Plus / Minus Query: 118 tcgccggcgataaagcctatcggcaaatcagcggtgcaccggatttgctccggccaagtc 177 |||||||||||| ||| |||||||| || |||||||||||||| ||||||||||| ||| Sbjct: 22943778 tcgccggcgatacggccgatcggcaagtcggcggtgcaccggatctgctccggccaggtc 22943719 Query: 178 atcttcgacctctcgtccgcagtgaaggagctcgtggagaacagccccgacgccggcgcc 237 |||||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||| Sbjct: 22943718 atcttcgacctctcctccgccgtcaaggagctcgtcgagaacagcctcgacgccggcgcc 22943659 Query: 238 accaccgtcgaggtcggcctcaaggcctacggtgaggagtggttcaaggtcgccgataac 297 ||||||||||||||| |||| ||||||| ||||| | |||| |||||||| ||| Sbjct: 22943658 accaccgtcgaggtcaccctccgctcctacggcgaggactccttcaccgtcgccgacaac 22943599 Query: 298 ggcagcggcatctcgcccagcaatttccaggc 329 |||| ||||||||| |||| |||||||||||| Sbjct: 22943598 ggcaccggcatctcccccaccaatttccaggc 22943567 Score = 71.9 bits (36), Expect = 2e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 325 caggcgcttgctctaaagcatcacacgtccaagatatcggatttctccgatctcaactcc 384 |||||||| ||||| ||||| ||||| |||||||| ||||| ||| ||| ||| |||| Sbjct: 22943489 caggcgctcgctctgaagcaccacacctccaagatctcggacttcggcgacctcgcctcc 22943430 Query: 385 gtggtcaccttcgggttccggggggaggcgttgagctccctctg 428 || | ||||||||||||||| ||||||||| | ||||| ||||| Sbjct: 22943429 gtcgccaccttcgggttccgcggggaggcgctcagctcgctctg 22943386 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 219 cagccccgacgccggcgccaccacc 243 |||||||||||||||||||| |||| Sbjct: 1417108 cagccccgacgccggcgccagcacc 1417084 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 cggcgccaccaccgtcgaggtcggcctc 258 |||||||| |||| |||||||||||||| Sbjct: 2193519 cggcgccatcaccttcgaggtcggcctc 2193492 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 cagccccgacgccggcgcca 238 |||||||||||||||||||| Sbjct: 1417306 cagccccgacgccggcgcca 1417287
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 198 bits (100), Expect = 1e-47 Identities = 184/212 (86%) Strand = Plus / Minus Query: 118 tcgccggcgataaagcctatcggcaaatcagcggtgcaccggatttgctccggccaagtc 177 |||||||||||| ||| |||||||| || |||||||||||||| ||||||||||| ||| Sbjct: 63580 tcgccggcgatacggccgatcggcaagtcggcggtgcaccggatctgctccggccaggtc 63521 Query: 178 atcttcgacctctcgtccgcagtgaaggagctcgtggagaacagccccgacgccggcgcc 237 |||||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||| Sbjct: 63520 atcttcgacctctcctccgccgtcaaggagctcgtcgagaacagcctcgacgccggcgcc 63461 Query: 238 accaccgtcgaggtcggcctcaaggcctacggtgaggagtggttcaaggtcgccgataac 297 ||||||||||||||| |||| ||||||| ||||| | |||| |||||||| ||| Sbjct: 63460 accaccgtcgaggtcaccctccgctcctacggcgaggactccttcaccgtcgccgacaac 63401 Query: 298 ggcagcggcatctcgcccagcaatttccaggc 329 |||| ||||||||| |||| |||||||||||| Sbjct: 63400 ggcaccggcatctcccccaccaatttccaggc 63369 Score = 71.9 bits (36), Expect = 2e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 325 caggcgcttgctctaaagcatcacacgtccaagatatcggatttctccgatctcaactcc 384 |||||||| ||||| ||||| ||||| |||||||| ||||| ||| ||| ||| |||| Sbjct: 63291 caggcgctcgctctgaagcaccacacctccaagatctcggacttcggcgacctcgcctcc 63232 Query: 385 gtggtcaccttcgggttccggggggaggcgttgagctccctctg 428 || | ||||||||||||||| ||||||||| | ||||| ||||| Sbjct: 63231 gtcgccaccttcgggttccgcggggaggcgctcagctcgctctg 63188
>ref|NM_116479.2| Arabidopsis thaliana ATP binding AT4G02460 mRNA, complete cds Length = 3099 Score = 63.9 bits (32), Expect = 4e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 166 tccggccaagtcatcttcgacctctcgtccgcagtgaaggagctcgtggagaacagcccc 225 ||||| ||||||||||| |||||||| || || || |||||||| || ||||| || | | Sbjct: 245 tccggtcaagtcatcttagacctctcttcggccgtcaaggagcttgtcgagaatagtctc 304 Query: 226 gacgccggcgccacca 241 |||||||||||||||| Sbjct: 305 gacgccggcgccacca 320
>gb|AY047228.1| Arabidopsis thaliana DNA mismatch repair protein (PMS1) mRNA, complete cds Length = 2772 Score = 63.9 bits (32), Expect = 4e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 166 tccggccaagtcatcttcgacctctcgtccgcagtgaaggagctcgtggagaacagcccc 225 ||||| ||||||||||| |||||||| || || || |||||||| || ||||| || | | Sbjct: 88 tccggtcaagtcatcttagacctctcttcggccgtcaaggagcttgtcgagaatagtctc 147 Query: 226 gacgccggcgccacca 241 |||||||||||||||| Sbjct: 148 gacgccggcgccacca 163
>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6 Length = 194892 Score = 63.9 bits (32), Expect = 4e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 166 tccggccaagtcatcttcgacctctcgtccgcagtgaaggagctcgtggagaacagcccc 225 ||||| ||||||||||| |||||||| || || || |||||||| || ||||| || | | Sbjct: 116073 tccggtcaagtcatcttagacctctcttcggccgtcaaggagcttgtcgagaatagtctc 116014 Query: 226 gacgccggcgccacca 241 |||||||||||||||| Sbjct: 116013 gacgccggcgccacca 115998
>emb|BX827796.1|CNS0A2FZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH22ZF10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2982 Score = 63.9 bits (32), Expect = 4e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 166 tccggccaagtcatcttcgacctctcgtccgcagtgaaggagctcgtggagaacagcccc 225 ||||| ||||||||||| |||||||| || || || |||||||| || ||||| || | | Sbjct: 220 tccggtcaagtcatcttagacctctcttcggccgtcaaggagcttgtcgagaatagtctc 279 Query: 226 gacgccggcgccacca 241 |||||||||||||||| Sbjct: 280 gacgccggcgccacca 295
>gb|AF069298.1|T14P8 Arabidopsis thaliana BAC T14P8 Length = 94536 Score = 63.9 bits (32), Expect = 4e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 166 tccggccaagtcatcttcgacctctcgtccgcagtgaaggagctcgtggagaacagcccc 225 ||||| ||||||||||| |||||||| || || || |||||||| || ||||| || | | Sbjct: 30541 tccggtcaagtcatcttagacctctcttcggccgtcaaggagcttgtcgagaatagtctc 30600 Query: 226 gacgccggcgccacca 241 |||||||||||||||| Sbjct: 30601 gacgccggcgccacca 30616
>dbj|AK117777.1| Arabidopsis thaliana At4g02460 mRNA for putative DNA mismatch repair protein (PMS1), complete cds, clone: RAFL17-46-G07 Length = 3246 Score = 63.9 bits (32), Expect = 4e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 166 tccggccaagtcatcttcgacctctcgtccgcagtgaaggagctcgtggagaacagcccc 225 ||||| ||||||||||| |||||||| || || || |||||||| || ||||| || | | Sbjct: 245 tccggtcaagtcatcttagacctctcttcggccgtcaaggagcttgtcgagaatagtctc 304 Query: 226 gacgccggcgccacca 241 |||||||||||||||| Sbjct: 305 gacgccggcgccacca 320
>ref|NM_189340.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2148 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 190 tcgtccgcagtgaaggagctcgtggagaacagccccgacgccggcgccaccaccgtc 246 ||||| || |||||||||||| | |||||||||| |||||| |||||| ||| |||| Sbjct: 115 tcgtcggcggtgaaggagctcatcgagaacagcctcgacgctggcgcctccagcgtc 171
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 190 tcgtccgcagtgaaggagctcgtggagaacagccccgacgccggcgccaccaccgtc 246 ||||| || |||||||||||| | |||||||||| |||||| |||||| ||| |||| Sbjct: 42261487 tcgtcggcggtgaaggagctcatcgagaacagcctcgacgctggcgcctccagcgtc 42261543
>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0401G10 Length = 160704 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 190 tcgtccgcagtgaaggagctcgtggagaacagccccgacgccggcgccaccaccgtc 246 ||||| || |||||||||||| | |||||||||| |||||| |||||| ||| |||| Sbjct: 33444 tcgtcggcggtgaaggagctcatcgagaacagcctcgacgctggcgcctccagcgtc 33500
>dbj|AK103319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125I19, full insert sequence Length = 2602 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 190 tcgtccgcagtgaaggagctcgtggagaacagccccgacgccggcgccaccaccgtc 246 ||||| || |||||||||||| | |||||||||| |||||| |||||| ||| |||| Sbjct: 229 tcgtcggcggtgaaggagctcatcgagaacagcctcgacgctggcgcctccagcgtc 285
>dbj|AK070111.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041N01, full insert sequence Length = 2554 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 190 tcgtccgcagtgaaggagctcgtggagaacagccccgacgccggcgccaccaccgtc 246 ||||| || |||||||||||| | |||||||||| |||||| |||||| ||| |||| Sbjct: 194 tcgtcggcggtgaaggagctcatcgagaacagcctcgacgctggcgcctccagcgtc 250
>gb|AC161032.19| Medicago truncatula clone mth2-21b7, complete sequence Length = 130355 Score = 48.1 bits (24), Expect = 0.024 Identities = 63/76 (82%) Strand = Plus / Plus Query: 166 tccggccaagtcatcttcgacctctcgtccgcagtgaaggagctcgtggagaacagcccc 225 ||||| ||||||||| |||||||||| ||||| || || || ||||| || || ||| Sbjct: 45499 tccggtcaagtcatcctcgacctctcctccgccgttaaagaactcgtcgaaaatagctta 45558 Query: 226 gacgccggcgccacca 241 |||||||||||||||| Sbjct: 45559 gacgccggcgccacca 45574
>emb|AJ720540.1| Gallus gallus mRNA for hypothetical protein, clone 19o6 Length = 2939 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Plus Query: 199 gtgaaggagctcgtggagaacagccccgacgccgg 233 ||||||||||| ||||||||||||| |||||||| Sbjct: 150 gtgaaggagctggtggagaacagcctggacgccgg 184
>ref|XM_474318.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 543 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 229 gccggcgccaccaccgtcgaggtcgg 254 ||||||||||||||| |||||||||| Sbjct: 76 gccggcgccaccaccttcgaggtcgg 101
>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17, complete sequence Length = 159894 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 229 gccggcgccaccaccgtcgaggtcgg 254 ||||||||||||||| |||||||||| Sbjct: 156291 gccggcgccaccaccttcgaggtcgg 156266
>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05, complete sequence Length = 164943 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 229 gccggcgccaccaccgtcgaggtcgg 254 ||||||||||||||| |||||||||| Sbjct: 50702 gccggcgccaccaccttcgaggtcgg 50677
>gb|AC010068.8| Drosophila melanogaster 3L BAC RP98-15K24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 178607 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 91 actggtttagtggggatgggaggagc 116 ||||||||||||||||| |||||||| Sbjct: 113529 actggtttagtggggattggaggagc 113504
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 289 gccgataacggcagcggcatctcgcc 314 ||||||||||||| |||||||||||| Sbjct: 3680859 gccgataacggcatcggcatctcgcc 3680834 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 gtcgccgataacggcagcggcatc 309 |||||||||||||||| ||||||| Sbjct: 3919577 gtcgccgataacggcatcggcatc 3919600
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 392 ccttcgggttccggggggaggcgttg 417 |||||||||| ||||||||||||||| Sbjct: 4151104 ccttcgggtttcggggggaggcgttg 4151129
>gb|DQ020061.1| Uncultured organism clone CB900P33 glutamine synthetase (glnA) gene, partial cds Length = 684 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 287 tcgccgataacggcagcggcat 308 |||||||||||||||||||||| Sbjct: 149 tcgccgataacggcagcggcat 170
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 229 gccggcgccaccaccgtcgaggtcgg 254 ||||||||||||||| |||||||||| Sbjct: 34433217 gccggcgccaccaccttcgaggtcgg 34433192
>dbj|AK071236.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082A20, full insert sequence Length = 772 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 229 gccggcgccaccaccgtcgaggtcgg 254 ||||||||||||||| |||||||||| Sbjct: 95 gccggcgccaccaccttcgaggtcgg 120
>emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0403D02, complete sequence Length = 138387 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 229 gccggcgccaccaccgtcgaggtcgg 254 ||||||||||||||| |||||||||| Sbjct: 54491 gccggcgccaccaccttcgaggtcgg 54466
>gb|AE003596.5| Drosophila melanogaster chromosome 3L, section 77 of 83 of the complete sequence Length = 249021 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 91 actggtttagtggggatgggaggagc 116 ||||||||||||||||| |||||||| Sbjct: 24577 actggtttagtggggattggaggagc 24552
>ref|XM_482308.1| Oryza sativa (japonica cultivar-group), mRNA Length = 777 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 gcgccaccaccgtcgaggtcg 253 ||||||||||||||||||||| Sbjct: 493 gcgccaccaccgtcgaggtcg 513
>ref|XM_463971.1| Oryza sativa (japonica cultivar-group), mRNA Length = 720 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 219 cagccccgacgccggcgccaccacc 243 |||||||||||||||||||| |||| Sbjct: 388 cagccccgacgccggcgccagcacc 364 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 cagccccgacgccggcgcca 238 |||||||||||||||||||| Sbjct: 586 cagccccgacgccggcgcca 567
>gb|AY440810.1| Armigeres subalbatus ASAP ID: 42401 cytosolic small ribosomal subunit S12 mRNA sequence Length = 596 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 ctcaaggcctacggtgaggag 276 ||||||||||||||||||||| Sbjct: 426 ctcaaggcctacggtgaggag 446
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 237 caccaccgtcgaggtcggcctcaag 261 |||||||||||||||| |||||||| Sbjct: 710193 caccaccgtcgaggtcagcctcaag 710169
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 gcgccaccaccgtcgaggtcg 253 ||||||||||||||||||||| Sbjct: 19359997 gcgccaccaccgtcgaggtcg 19359977
>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0482F12 Length = 147735 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 219 cagccccgacgccggcgccaccacc 243 |||||||||||||||||||| |||| Sbjct: 98380 cagccccgacgccggcgccagcacc 98356 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 cagccccgacgccggcgcca 238 |||||||||||||||||||| Sbjct: 98578 cagccccgacgccggcgcca 98559
>gb|AE004982.1| Halobacterium sp. NRC-1 section 13 of 170 of the complete genome Length = 13571 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 gggttccggggggaggcgttg 417 ||||||||||||||||||||| Sbjct: 4811 gggttccggggggaggcgttg 4791
>dbj|AP004636.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0685B10 Length = 148544 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 gcgccaccaccgtcgaggtcg 253 ||||||||||||||||||||| Sbjct: 89440 gcgccaccaccgtcgaggtcg 89420
>ref|XM_464094.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1080 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 cggcgccaccaccgtcgaggtcggcctc 258 |||||||| |||| |||||||||||||| Sbjct: 997 cggcgccatcaccttcgaggtcggcctc 970
>ref|XM_592213.2| PREDICTED: Bos taurus similar to coiled-coil domain containing 11 (LOC540193), mRNA Length = 1941 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 gaaggagctcgtggagaaca 220 |||||||||||||||||||| Sbjct: 1065 gaaggagctcgtggagaaca 1084
>ref|XM_870447.1| PREDICTED: Bos taurus similar to syncoilin (LOC618122), mRNA Length = 5972 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 345 tcacacgtccaagatatcggatttctcc 372 |||||| ||||||||||| ||||||||| Sbjct: 4812 tcacacttccaagatatctgatttctcc 4785
>emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment 11/24 Length = 303250 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 gcatctcgcccagcaatttc 324 |||||||||||||||||||| Sbjct: 250362 gcatctcgcccagcaatttc 250343
>gb|DQ070881.1| Uncultured cyanobacterium clone LE3472P2 glutamine synthetase (glnA) gene, partial cds Length = 684 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gccgataacggcagcggcat 308 |||||||||||||||||||| Sbjct: 154 gccgataacggcagcggcat 173
>gb|DQ066755.1| Uncultured cyanobacterium clone CB912P10 glutamine synthetase gene, partial cds Length = 684 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gccgataacggcagcggcat 308 |||||||||||||||||||| Sbjct: 154 gccgataacggcagcggcat 173
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 cccgacgccggcgccaccac 242 |||||||||||||||||||| Sbjct: 4556962 cccgacgccggcgccaccac 4556981
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 accgtcgaggtcggcctcaaggcc 264 ||||||||||| |||||||||||| Sbjct: 1076488 accgtcgaggtgggcctcaaggcc 1076465
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 cggcgccaccaccgtcgagg 250 |||||||||||||||||||| Sbjct: 7421986 cggcgccaccaccgtcgagg 7421967
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1679_B08 Length = 142529 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 cggcgccaccaccgtcgaggtcggcctc 258 |||||||| |||| |||||||||||||| Sbjct: 108212 cggcgccatcaccttcgaggtcggcctc 108185
>dbj|AK105278.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B06, full insert sequence Length = 2050 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 cggcgccaccaccgtcgaggtcggcctc 258 |||||||| |||| |||||||||||||| Sbjct: 1712 cggcgccatcaccttcgaggtcggcctc 1685
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 ccgacgccggcgccaccaccgtcg 247 ||||||||||||||| |||||||| Sbjct: 154331 ccgacgccggcgccaacaccgtcg 154308
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 ccgacgccggcgccaccaccgtcg 247 ||||||||||||||| |||||||| Sbjct: 154331 ccgacgccggcgccaacaccgtcg 154308
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 199 gtgaaggagctcgtggagaacagc 222 ||||| |||||||||||||||||| Sbjct: 626928 gtgaaagagctcgtggagaacagc 626951 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,073,094 Number of Sequences: 3902068 Number of extensions: 2073094 Number of successful extensions: 50628 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 50048 Number of HSP's gapped (non-prelim): 577 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
