ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl38d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137113.4| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.089
5dbj|AP005007.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.089
6dbj|AP004771.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.089
7dbj|AK101376.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.089
8gb|U26644.1|HSU26644 Human fatty acid synthase (fas) mRNA, compl... 46 0.089
9ref|XM_310879.2| Anopheles gambiae str. PEST ENSANGP00000008051 ... 44 0.35
10gb|AY118081.2| Streptomyces sp. KCTC 0041BP dihydrochalcomyin bi... 42 1.4
11ref|NM_197902.1| Oryza sativa (japonica cultivar-group) hypothet... 42 1.4
12gb|AY368490.1| Suid herpesvirus 1 strain Becker membrane glycopr... 42 1.4
13gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 gen... 42 1.4
14emb|AJ271967.1|PVI271967 Suid herpesvirus 1 strain Kaplan mutant... 42 1.4
15gb|AY249861.1| Pseudorabies virus glycoprotein gE (gE) and 11 kD... 42 1.4
16tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome 42 1.4
17dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
18gb|AF251220.1|AF251220 Pseudorabies virus Ea type II envelope pr... 42 1.4
19dbj|AK119822.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
20ref|XM_315931.2| Anopheles gambiae str. PEST ENSANGP00000013511 ... 42 1.4
21dbj|AK107128.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
22dbj|AK071802.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
23gb|U27487.1|SHU27487 Suid herpesvirus 1 glycoprotein gI mRNA, pa... 42 1.4
24gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
25dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.4
26gb|M16769.1|SH111PA Pseudorabies virus small ORF, complete cds 42 1.4
27ref|XM_468418.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
28ref|XM_465124.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
29ref|NM_196109.1| Oryza sativa (japonica cultivar-group) putative... 40 5.5
30gb|AE007260.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 5.5
31gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 5.5
32emb|AL645608.30| Human DNA sequence from clone RP11-54O7 on chro... 40 5.5
33gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 5.5
34emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ... 40 5.5
35emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete ... 40 5.5
36emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete ... 40 5.5
37emb|AJ417789.1|PSP417789 Polytomella sp. 'Pringsheim 198.80' mRN... 40 5.5
38emb|AJ344068.1|PPU344068 Pseudomonas putida plasmid pWW0 complet... 40 5.5
39gb|AF275673.1| Aedes triseriatus clone ATE-002 unknown mRNA 40 5.5
40gb|AC113335.1| Genomic sequence for Oryza sativa (japonica culti... 40 5.5
41gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar N... 40 5.5
42gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.5
43gb|AF307090.1| Thiobacillus denitrificans CbbR (cbbR) gene, comp... 40 5.5
44gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.5
45gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 5.5
46dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.5
47dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.5
48dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
49dbj|AP005310.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
50dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
51dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
52dbj|AK067524.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
53gb|U27612.2|SVU27612 Stealth virus 1 clone 3B23 40 5.5
54gb|U27878.1|SVU27878 Stealth virus 1 clone 3B23 T7 40 5.5
55gb|M64747.1|PWWXYL Pseudomonas putida plasmid pWW0 meta operon, ... 40 5.5 
>gb|AC137113.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0006N14, complete sequence
          Length = 155730

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                
Query: 352   ctacgacatggaggagtgcatcgaccgcttcatgc 386
             ||||||||||||||| |||||||||||||||||||
Sbjct: 68936 ctacgacatggaggactgcatcgaccgcttcatgc 68902
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 352      ctacgacatggaggagtgcatcgaccgcttcatgc 386
                ||||||||||||||| |||||||||||||||||||
Sbjct: 15213303 ctacgacatggaggactgcatcgaccgcttcatgc 15213269
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 352      ctacgacatggaggagtgcatcgaccgcttcatgc 386
                ||||||||||||||| |||||||||||||||||||
Sbjct: 15294802 ctacgacatggaggactgcatcgaccgcttcatgc 15294768
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 352     ctacgacatggaggagtgcatcgaccgcttc 382
               ||||||||| ||||| |||||||||||||||
Sbjct: 9927055 ctacgacatcgaggattgcatcgaccgcttc 9927025



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 175      cgccaagctcgccgccctgc 194
                ||||||||||||||||||||
Sbjct: 35126877 cgccaagctcgccgccctgc 35126896



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 385      gcgacgcgtcggcggcggcg 404
                ||||||||||||||||||||
Sbjct: 11716074 gcgacgcgtcggcggcggcg 11716093
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>dbj|AP005007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0521F09
          Length = 164823

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 352    ctacgacatggaggagtgcatcgaccgcttc 382
              ||||||||| ||||| |||||||||||||||
Sbjct: 108017 ctacgacatcgaggattgcatcgaccgcttc 107987
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>dbj|AP004771.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0413A11
          Length = 188440

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 352  ctacgacatggaggagtgcatcgaccgcttc 382
            ||||||||| ||||| |||||||||||||||
Sbjct: 1748 ctacgacatcgaggattgcatcgaccgcttc 1718
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>dbj|AK101376.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036C01, full
           insert sequence
          Length = 2352

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 352 ctacgacatggaggagtgcatcgaccgcttc 382
           ||||||||| ||||| |||||||||||||||
Sbjct: 384 ctacgacatcgaggattgcatcgaccgcttc 414
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>gb|U26644.1|HSU26644 Human fatty acid synthase (fas) mRNA, complete cds
          Length = 7515

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 301  ggggctcgacgccctggccaagg 323
            |||||||||||||||||||||||
Sbjct: 1005 ggggctcgacgccctggccaagg 1027
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>ref|XM_310879.2| Anopheles gambiae str. PEST ENSANGP00000008051
           (ENSANGG00000006072), partial mRNA
          Length = 882

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 188 gccctgctcggcggcgagtaca 209
           ||||||||||||||||||||||
Sbjct: 274 gccctgctcggcggcgagtaca 295
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>gb|AY118081.2| Streptomyces sp. KCTC 0041BP dihydrochalcomyin biosynthesis gene
             cluster, complete sequence
          Length = 75439

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 183   tcgccgccctgctcggcggcg 203
             |||||||||||||||||||||
Sbjct: 57507 tcgccgccctgctcggcggcg 57527
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>ref|NM_197902.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0056G17.17), mRNA
          Length = 1191

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 136 ggacgtgggcgtcgggacgggggcgctgg 164
           ||||||||||| |||||||||| ||||||
Sbjct: 726 ggacgtgggcggcgggacggggacgctgg 754
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>gb|AY368490.1| Suid herpesvirus 1 strain Becker membrane glycoprotein gD (US6) gene,
            partial cds; membrane glycoprotein gI (US7), membrane
            glycoprotein gE (US8), and membrane protein US9 (US9)
            genes, complete cds; and protein US2 (US2) gene, partial
            cds
          Length = 3656

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 145  cgtcgggacgggggcgctggg 165
            |||||||||||||||||||||
Sbjct: 3061 cgtcgggacgggggcgctggg 3041
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>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence,
            complete sequence
          Length = 139999

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 136  ggacgtgggcgtcgggacgggggcgctgg 164
            ||||||||||| |||||||||| ||||||
Sbjct: 8810 ggacgtgggcggcgggacggggacgctgg 8782
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>emb|AJ271967.1|PVI271967 Suid herpesvirus 1 strain Kaplan mutant gDiE gene for hybrid protein
            gDiE
          Length = 1827

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 145  cgtcgggacgggggcgctggg 165
            |||||||||||||||||||||
Sbjct: 1686 cgtcgggacgggggcgctggg 1666
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>gb|AY249861.1| Pseudorabies virus glycoprotein gE (gE) and 11 kDa protein genes,
            complete cds; and 28 kDa protein gene, partial cds
          Length = 2772

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 145  cgtcgggacgggggcgctggg 165
            |||||||||||||||||||||
Sbjct: 1876 cgtcgggacgggggcgctggg 1856
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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 145    cgtcgggacgggggcgctggg 165
              |||||||||||||||||||||
Sbjct: 125328 cgtcgggacgggggcgctggg 125308
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 136      ggacgtgggcgtcgggacgggggcgctgg 164
                ||||||||||| |||||||||| ||||||
Sbjct: 22554141 ggacgtgggcggcgggacggggacgctgg 22554113



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 355      cgacatggaggagtgcatcgaccgcttc 382
                |||||||||||| ||| |||||||||||
Sbjct: 11147249 cgacatggaggactgcgtcgaccgcttc 11147276
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>gb|AF251220.1|AF251220 Pseudorabies virus Ea type II envelope protein US9 gene, complete
           cds
          Length = 614

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 cgtcgggacgggggcgctggg 165
           |||||||||||||||||||||
Sbjct: 96  cgtcgggacgggggcgctggg 76
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>dbj|AK119822.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-D05, full
           insert sequence
          Length = 2183

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 136 ggacgtgggcgtcgggacgggggcgctgg 164
           ||||||||||| |||||||||| ||||||
Sbjct: 726 ggacgtgggcggcgggacggggacgctgg 754
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>ref|XM_315931.2| Anopheles gambiae str. PEST ENSANGP00000013511 (ENSANGG00000011022),
            partial mRNA
          Length = 3201

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 129  agatggcggacgtgggcgtcg 149
            |||||||||||||||||||||
Sbjct: 3175 agatggcggacgtgggcgtcg 3155
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>dbj|AK107128.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C02, full
           insert sequence
          Length = 1468

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 136 ggacgtgggcgtcgggacgggggcgctgg 164
           ||||||||||| |||||||||| ||||||
Sbjct: 758 ggacgtgggcggcgggacggggacgctgg 786
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>dbj|AK071802.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112H03, full
           insert sequence
          Length = 1613

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 136 ggacgtgggcgtcgggacgggggcgctgg 164
           ||||||||||| |||||||||| ||||||
Sbjct: 778 ggacgtgggcggcgggacggggacgctgg 750
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>gb|U27487.1|SHU27487 Suid herpesvirus 1 glycoprotein gI mRNA, partial cds, and 11 kDa
           protein mRNA, complete cds
          Length = 1088

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 cgtcgggacgggggcgctggg 165
           |||||||||||||||||||||
Sbjct: 681 cgtcgggacgggggcgctggg 661
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 136      ggacgtgggcgtcgggacgggggcgctgg 164
                ||||||||||| |||||||||| ||||||
Sbjct: 22566609 ggacgtgggcggcgggacggggacgctgg 22566581



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 355      cgacatggaggagtgcatcgaccgcttc 382
                |||||||||||| ||| |||||||||||
Sbjct: 11153689 cgacatggaggactgcgtcgaccgcttc 11153716
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 182    ctcgccgccctgctcggcggc 202
              |||||||||||||||||||||
Sbjct: 404411 ctcgccgccctgctcggcggc 404391
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>gb|M16769.1|SH111PA Pseudorabies virus small ORF, complete cds
          Length = 471

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 cgtcgggacgggggcgctggg 165
           |||||||||||||||||||||
Sbjct: 97  cgtcgggacgggggcgctggg 77
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>ref|XM_468418.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 948

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 175 cgccaagctcgccgccctgc 194
           ||||||||||||||||||||
Sbjct: 702 cgccaagctcgccgccctgc 721
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>ref|XM_465124.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 516

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 385 gcgacgcgtcggcggcggcg 404
           ||||||||||||||||||||
Sbjct: 17  gcgacgcgtcggcggcggcg 36
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>ref|NM_196109.1| Oryza sativa (japonica cultivar-group) putative disease resistance
           protein (OJ1003C07.2), mRNA
          Length = 2997

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 355 cgacatggaggagtgcatcgaccgcttc 382
           |||||||||||| ||| |||||||||||
Sbjct: 231 cgacatggaggactgcgtcgaccgcttc 258
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>gb|AE007260.1| Sinorhizobium meliloti 1021 plasmid pSymA section 66 of 121 of the
            complete plasmid sequence
          Length = 11000

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 299  gaggggctcgacgccctggccaaggactggaa 330
            |||| ||||||||| || ||||||||||||||
Sbjct: 6463 gaggcgctcgacgctctcgccaaggactggaa 6494
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 181     gctcgccgccctgctcggcg 200
               ||||||||||||||||||||
Sbjct: 2497125 gctcgccgccctgctcggcg 2497106
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>emb|AL645608.30| Human DNA sequence from clone RP11-54O7 on chromosome 1 Contains three
             novel genes, a novel gene (MGC45873), a novel gene
             (DKFZP564C186), a novel gene, a novel gene
             (DKFZP434H2010), a novel gene (MGC13275), the gene for
             bHLH factor Hes4 (Hes4), a ribosomal protein L39 (RPL39)
             pseudogene, a novel gene, the G1P2 gene for interferon
             alpha-inducible protein (clone IFI-15K), the AGRN gene for
             agrin, two novel genes and fifteen CpG islands, complete
             sequence
          Length = 186759

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 316   ggccaaggactggaagggcagcat 339
             |||||||||||||||| |||||||
Sbjct: 48764 ggccaaggactggaagcgcagcat 48787
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 181     gctcgccgccctgctcggcg 200
               ||||||||||||||||||||
Sbjct: 1714766 gctcgccgccctgctcggcg 1714747



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 172     catcgccaagctcgccgccctgctcggc 199
               |||||||  |||||||||||||||||||
Sbjct: 1278326 catcgcccggctcgccgccctgctcggc 1278299
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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 181    gctcgccgccctgctcggcggcga 204
              |||||||| |||||||||||||||
Sbjct: 128726 gctcgccgtcctgctcggcggcga 128703
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>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    gctcgacgccctggccaagg 323
              ||||||||||||||||||||
Sbjct: 101135 gctcgacgccctggccaagg 101116
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>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    cgccgccctgctcggcggcg 203
              ||||||||||||||||||||
Sbjct: 169775 cgccgccctgctcggcggcg 169794
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>emb|AJ417789.1|PSP417789 Polytomella sp. 'Pringsheim 198.80' mRNA for aldehyde dehydrogenase
           (aldh gene)
          Length = 2164

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 tcatcgccaagctcgccgcc 190
           ||||||||||||||||||||
Sbjct: 746 tcatcgccaagctcgccgcc 765
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>emb|AJ344068.1|PPU344068 Pseudomonas putida plasmid pWW0 complete genome
          Length = 116580

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   gctcgccgccctgctcggcg 200
             ||||||||||||||||||||
Sbjct: 53546 gctcgccgccctgctcggcg 53565
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>gb|AF275673.1| Aedes triseriatus clone ATE-002 unknown mRNA
          Length = 609

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 tcggcggcgagtacaagatg 214
           ||||||||||||||||||||
Sbjct: 203 tcggcggcgagtacaagatg 222
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>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OJ1003C07, from chromosome 10, complete
             sequence
          Length = 115188

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 355   cgacatggaggagtgcatcgaccgcttc 382
             |||||||||||| ||| |||||||||||
Sbjct: 11808 cgacatggaggactgcgtcgaccgcttc 11781
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>gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
             OJ1208D02 from chromosome 10, complete sequence
          Length = 120132

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 355   cgacatggaggagtgcatcgaccgcttc 382
             |||||||||||| ||| |||||||||||
Sbjct: 15369 cgacatggaggactgcgtcgaccgcttc 15396
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 304     gctcgacgccctggccaagg 323
               ||||||||||||||||||||
Sbjct: 1461094 gctcgacgccctggccaagg 1461075
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>gb|AF307090.1| Thiobacillus denitrificans CbbR (cbbR) gene, complete cds and
            carboxysome operon, complete sequence
          Length = 6577

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 182  ctcgccgccctgctcggcggcgag 205
            ||||||| ||||||||||||||||
Sbjct: 1976 ctcgccggcctgctcggcggcgag 1953
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 185     gccgccctgctcggcggcga 204
               ||||||||||||||||||||
Sbjct: 5074748 gccgccctgctcggcggcga 5074767



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    gccgccctgctcggcggcga 204
              ||||||||||||||||||||
Sbjct: 259538 gccgccctgctcggcggcga 259557
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 182     ctcgccgccctgctcggcggcgag 205
               ||||||| ||||||||||||||||
Sbjct: 2723909 ctcgccggcctgctcggcggcgag 2723932
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 304    gctcgacgccctggccaaggactggaagggca 335
              |||||||||| ||  |||||||||||||||||
Sbjct: 553325 gctcgacgccatgcgcaaggactggaagggca 553294
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 181     gctcgccgccctgctcggcggcga 204
               |||||||||||||||| |||||||
Sbjct: 2067006 gctcgccgccctgctccgcggcga 2066983
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>dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0010K08
          Length = 184760

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 385    gcgacgcgtcggcggcggcg 404
              ||||||||||||||||||||
Sbjct: 162363 gcgacgcgtcggcggcggcg 162382
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>dbj|AP005310.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0477B05
          Length = 142166

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   gcgacgcgtcggcggcggcg 404
             ||||||||||||||||||||
Sbjct: 23964 gcgacgcgtcggcggcggcg 23983
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>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1202_E07
          Length = 145014

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   cgccaagctcgccgccctgc 194
             ||||||||||||||||||||
Sbjct: 22233 cgccaagctcgccgccctgc 22252
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>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1136_C12
          Length = 103973

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    cgccaagctcgccgccctgc 194
              ||||||||||||||||||||
Sbjct: 100040 cgccaagctcgccgccctgc 100059
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>dbj|AK067524.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108I15, full
           insert sequence
          Length = 3763

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 355 cgacatggaggagtgcatcgaccgcttc 382
           |||||||||||| ||| |||||||||||
Sbjct: 348 cgacatggaggactgcgtcgaccgcttc 375
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>gb|U27612.2|SVU27612 Stealth virus 1 clone 3B23
          Length = 8916

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 gtcatcgccaagctcgccgc 189
           ||||||||||||||||||||
Sbjct: 234 gtcatcgccaagctcgccgc 215
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>gb|U27878.1|SVU27878 Stealth virus 1 clone 3B23 T7
          Length = 839

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 gtcatcgccaagctcgccgc 189
           ||||||||||||||||||||
Sbjct: 234 gtcatcgccaagctcgccgc 215
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>gb|M64747.1|PWWXYL Pseudomonas putida plasmid pWW0 meta operon, 5' genes
          Length = 9037

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  gctcgccgccctgctcggcg 200
            ||||||||||||||||||||
Sbjct: 3037 gctcgccgccctgctcggcg 3018


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,997,329
Number of Sequences: 3902068
Number of extensions: 2997329
Number of successful extensions: 71202
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69252
Number of HSP's gapped (non-prelim): 1949
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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