ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38d01 |
|---|---|
| Clone Library Name | barley_pub |
>XYL1_ARATH (Q9S7Y7) Alpha-xylosidase precursor (EC 3.2.1.-)| Length = 915 Score = 35.4 bits (80), Expect = 0.073 Identities = 16/32 (50%), Positives = 24/32 (75%) Frame = +2 Query: 323 GFGYRLVSLVQRPNGGGLVGLLQVKRRSSTFG 418 G GYRLVS+ + P+ GG +G LQVK+++ +G Sbjct: 32 GKGYRLVSIEESPD-GGFIGYLQVKQKNKIYG 62
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2160 Score = 32.7 bits (73), Expect = 0.47 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 11/68 (16%) Frame = -1 Query: 458 PGLVLTRAEAGMSGRRWRSGASPGGGLRG-----------RRRWVAGRGTPAGTRTRPAW 312 PG+ G G+ SG+S GGG G +R W + + RP Sbjct: 1393 PGMERQNRRPGPGGKAGSSGSSSGGGGAGPGGRTGPGRGDKRSWPSPKNRSRPPEERPPG 1452 Query: 311 VPLPAPWP 288 +PLP P P Sbjct: 1453 LPLPPPPP 1460
>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7| Length = 1303 Score = 32.3 bits (72), Expect = 0.62 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = -1 Query: 416 RRWRSGASPGGGLRGRRRWVAGRGTPAGTRTR 321 RR + G+S G G RGR R GRG+ G+R R Sbjct: 228 RRAKEGSSRGRGSRGRGRGYRGRGSRGGSRGR 259
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2157 Score = 32.3 bits (72), Expect = 0.62 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 11/68 (16%) Frame = -1 Query: 458 PGLVLTRAEAGMSGRRWRSGASPGGGLRG-----------RRRWVAGRGTPAGTRTRPAW 312 PG+ G G+ SG+S GGG G +R W + + RP Sbjct: 1390 PGMERQNRRPGPGGKAGSSGSSSGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPPEERPPG 1449 Query: 311 VPLPAPWP 288 +PLP P P Sbjct: 1450 LPLPPPPP 1457
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 32.3 bits (72), Expect = 0.62 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = -1 Query: 416 RRWRSGASPGGGLRGRRRWVAGRGTPAGTRTR 321 RR + G+S G G RGR R GRG+ G+R R Sbjct: 228 RRAKEGSSRGRGSRGRGRGYRGRGSRGGSRGR 259
>SELU_SALTI (Q8Z8R4) tRNA 2-selenouridine synthase (EC 2.9.1.-)| (Selenophosphate-dependent tRNA 2-selenouridine synthase) Length = 364 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = +2 Query: 353 QRPNGGGLVGLLQVKRRSSTFGLTSPPQLSSARDQDR 463 Q+PNG L GL + R S+FG T PQLS A +++ Sbjct: 161 QQPNGVDLEGL--ARHRGSSFGRTLKPQLSQASFENK 195
>SELU_SALTY (Q8ZR88) tRNA 2-selenouridine synthase (EC 2.9.1.-)| (Selenophosphate-dependent tRNA 2-selenouridine synthase) Length = 364 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = +2 Query: 353 QRPNGGGLVGLLQVKRRSSTFGLTSPPQLSSARDQDR 463 Q+PNG L GL + R S+FG T PQLS A +++ Sbjct: 161 QQPNGVDLEGL--ARHRGSSFGRTLNPQLSQASFENK 195
>SELU_SALPA (Q5PCH1) tRNA 2-selenouridine synthase (EC 2.9.1.-)| (Selenophosphate-dependent tRNA 2-selenouridine synthase) Length = 364 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = +2 Query: 353 QRPNGGGLVGLLQVKRRSSTFGLTSPPQLSSARDQDR 463 Q+PNG L GL + R S+FG T PQLS A +++ Sbjct: 161 QQPNGVDLEGL--ARHRGSSFGRTLNPQLSQASFENK 195
>SELU_SALEN (Q9S4Y8) tRNA 2-selenouridine synthase (EC 2.9.1.-)| (Selenophosphate-dependent tRNA 2-selenouridine synthase) Length = 364 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = +2 Query: 353 QRPNGGGLVGLLQVKRRSSTFGLTSPPQLSSARDQDR 463 Q+PNG L GL + R S+FG T PQLS A +++ Sbjct: 161 QQPNGVDLEGL--ARHRGSSFGRTLNPQLSQASFENK 195
>SELU_SALCH (Q57S51) tRNA 2-selenouridine synthase (EC 2.9.1.-)| (Selenophosphate-dependent tRNA 2-selenouridine synthase) Length = 364 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = +2 Query: 353 QRPNGGGLVGLLQVKRRSSTFGLTSPPQLSSARDQDR 463 Q+PNG L GL + R S+FG T PQLS A +++ Sbjct: 161 QQPNGVDLEGL--ARHRGSSFGRTLNPQLSQASFENK 195
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 11/68 (16%) Frame = -1 Query: 458 PGLVLTRAEAGMSGRRWRSGASPGGGLRG-----------RRRWVAGRGTPAGTRTRPAW 312 PG+ G G+ G S GGG G +R W + + RP Sbjct: 1386 PGMDRQNRRPGTGGKTGSGGGSSGGGGAGPGGRTGPGRGDKRSWPSPKNRSRPPEERPPG 1445 Query: 311 VPLPAPWP 288 +PLP P P Sbjct: 1446 LPLPPPPP 1453
>FUT4_PANTR (Q659K9) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) Length = 405 Score = 30.8 bits (68), Expect = 1.8 Identities = 24/67 (35%), Positives = 25/67 (37%), Gaps = 14/67 (20%) Frame = -1 Query: 395 SPGGGLRGRRRWVAGRGTP--------AGTR-----TRPAWVPL-PAPWPCDWPSRLRRR 258 SP GRRRW GRG P AG T W L P PW PSR Sbjct: 7 SPTAAAGGRRRWRRGRGLPWTVCVLAAAGLTCTALITYACWGQLPPLPWASPTPSRPVGV 66 Query: 257 HCWCRPW 237 W P+ Sbjct: 67 LLWWEPF 73
>SELU_SHISS (Q3Z4Q0) tRNA 2-selenouridine synthase (EC 2.9.1.-)| (Selenophosphate-dependent tRNA 2-selenouridine synthase) Length = 364 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/32 (53%), Positives = 19/32 (59%) Frame = +2 Query: 353 QRPNGGGLVGLLQVKRRSSTFGLTSPPQLSSA 448 Q+PNG L GL + R S FG T PQLS A Sbjct: 161 QQPNGVDLEGL--ARHRGSAFGRTLQPQLSQA 190
>SELU_SHIFL (Q83SD5) tRNA 2-selenouridine synthase (EC 2.9.1.-)| (Selenophosphate-dependent tRNA 2-selenouridine synthase) Length = 364 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/32 (53%), Positives = 19/32 (59%) Frame = +2 Query: 353 QRPNGGGLVGLLQVKRRSSTFGLTSPPQLSSA 448 Q+PNG L GL + R S FG T PQLS A Sbjct: 161 QQPNGVDLEGL--ARHRGSAFGRTLQPQLSQA 190
>SELU_ECOLI (P33667) tRNA 2-selenouridine synthase (EC 2.9.1.-)| (Selenophosphate-dependent tRNA 2-selenouridine synthase) Length = 364 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/32 (53%), Positives = 19/32 (59%) Frame = +2 Query: 353 QRPNGGGLVGLLQVKRRSSTFGLTSPPQLSSA 448 Q+PNG L GL + R S FG T PQLS A Sbjct: 161 QQPNGVDLEGL--ARHRGSAFGRTLQPQLSQA 190
>SELU_ECO57 (Q8XCZ2) tRNA 2-selenouridine synthase (EC 2.9.1.-)| (Selenophosphate-dependent tRNA 2-selenouridine synthase) Length = 364 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/32 (53%), Positives = 19/32 (59%) Frame = +2 Query: 353 QRPNGGGLVGLLQVKRRSSTFGLTSPPQLSSA 448 Q+PNG L GL + R S FG T PQLS A Sbjct: 161 QQPNGVDLEGL--ARHRGSAFGRTLQPQLSQA 190
>CYCG_RHOS4 (Q53143) Diheme cytochrome c-type| Length = 296 Score = 30.4 bits (67), Expect = 2.3 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = -1 Query: 389 GGGLRGRRRWVAGRGTPAGTRTRPAWVPLPAPW 291 G GLR + RW+AG P G T P P W Sbjct: 211 GLGLRDKSRWLAGGPNPEGRGTIPNITPAKLDW 243
>SELU_ECOL6 (Q8FK67) tRNA 2-selenouridine synthase (EC 2.9.1.-)| (Selenophosphate-dependent tRNA 2-selenouridine synthase) Length = 361 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/32 (53%), Positives = 19/32 (59%) Frame = +2 Query: 353 QRPNGGGLVGLLQVKRRSSTFGLTSPPQLSSA 448 Q+PNG L GL + R S FG T PQLS A Sbjct: 161 QQPNGVDLEGL--ARHRGSAFGRTLQPQLSQA 190
>PO5F1_BOVIN (O97552) POU domain, class 5, transcription factor 1| (Octamer-binding transcription factor 3) (Oct-3) (Oct-4) Length = 360 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Frame = -1 Query: 401 GASPGG---GLRGRRRWVAGRGTPAGTRTRPAWVPLPAPW---PCDWPSRLRRRHCWCRP 240 G PGG G R W++ +G P G+ P VP W PC P L +C P Sbjct: 19 GDGPGGPEPGWVDPRTWMSFQGPPGGSGIGPGVVPGAEVWGLPPCPPPYDLCGGMAYCAP 78
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 10/67 (14%) Frame = -1 Query: 458 PGLVLTRAEAGMSGRRWRSGASPGGGL---------RG-RRRWVAGRGTPAGTRTRPAWV 309 PG+ G G+ G+S GGG RG +R W + + RP + Sbjct: 1391 PGMDRQNRRPGAGGKTGGGGSSGGGGAGPGGRTGPGRGDKRSWPSPKNRSRPPEERPPGL 1450 Query: 308 PLPAPWP 288 PLP P P Sbjct: 1451 PLPPPPP 1457
>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor| Length = 1355 Score = 30.0 bits (66), Expect = 3.1 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Frame = -1 Query: 458 PGLVLTRAEAGMSGRRWRSGAS-PGG--GLRGRRRWVAGRGTPAGTRTRPAWVPLPAP 294 PGL+ R G SG G P G G+ GR +G PAG R P + P P Sbjct: 435 PGLLGARGLPGFSGSNGPQGKEGPAGPQGIEGR----SGAAGPAGARGEPGAIGFPGP 488
>NBEA_DROME (Q9W4E2) Protein neurobeachin (Protein rugose) (A-kinase anchor| protein 550) (AKAP 550) (dAKAP550) Length = 3584 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%) Frame = -1 Query: 401 GASPGGGLRGRRRWVAGRGTPAGTRTRPAWVPLPAP-----WPCDWPSR 270 GA GGG+ + G+G P+ R RP +P+ AP P PSR Sbjct: 2458 GAGSGGGVNSGQ----GQGVPSNQRPRPEELPMKAPALVAQLPLTTPSR 2502
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/34 (44%), Positives = 16/34 (47%) Frame = -1 Query: 428 GMSGRRWRSGASPGGGLRGRRRWVAGRGTPAGTR 327 G G RW G GGG+ G RW G G G R Sbjct: 239 GGGGDRWGGG---GGGMGGGDRWGGGGGMGGGDR 269
>FAAH_PIG (Q9TUI8) Fatty-acid amide hydrolase (EC 3.1.-.-) (Oleamide| hydrolase) (Anandamide amidohydrolase) Length = 579 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = -1 Query: 428 GMSGRRWRSGASPGGGLRGRRRWVAGRGTPAGTRT 324 G + W S SPGG G +A G+P G T Sbjct: 202 GQTTNPWMSSKSPGGSSGGEGALIAAGGSPLGLGT 236
>XLNR_ASPNG (O42804) Transcriptional activator xlnR| Length = 875 Score = 28.5 bits (62), Expect = 8.9 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = -1 Query: 320 PAWVPLPAPWPCDWPS 273 P W+PLP+P P ++PS Sbjct: 268 PGWLPLPSPSPANFPS 283
>AVEN_MOUSE (Q9D9K3) Cell death regulator Aven| Length = 342 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/31 (54%), Positives = 18/31 (58%) Frame = -1 Query: 419 GRRWRSGASPGGGLRGRRRWVAGRGTPAGTR 327 GR +R G GGGLRG R GRG A TR Sbjct: 48 GRGFRRGRG-GGGLRGGRWEPGGRGGGASTR 77
>Y4762_ARATH (Q8RY73) Protein At4g17620, chloroplast precursor| Length = 544 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/41 (36%), Positives = 18/41 (43%) Frame = -1 Query: 410 WRSGASPGGGLRGRRRWVAGRGTPAGTRTRPAWVPLPAPWP 288 W + G G GR RW GRG P +P P P+P Sbjct: 142 WSNDNHGGRGGMGRGRWSNGRG-------GPGLLPRPGPYP 175
>FUT4_HUMAN (P22083) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) (ELAM-1 ligand fucosyltransferase) Length = 405 Score = 28.5 bits (62), Expect = 8.9 Identities = 26/75 (34%), Positives = 28/75 (37%), Gaps = 14/75 (18%) Frame = -1 Query: 419 GRRWRSGASPGGGLRGRRRWVAGRGTP--------AGTR-----TRPAWVPL-PAPWPCD 282 G W S + GG RG RR GRG P AG T W L P PW Sbjct: 2 GAPWGSPTAAAGGRRGWRR---GRGLPWTVCVLAAAGLTCTALITYACWGQLPPLPWASP 58 Query: 281 WPSRLRRRHCWCRPW 237 PSR W P+ Sbjct: 59 TPSRPVGVLLWWEPF 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,308,641 Number of Sequences: 219361 Number of extensions: 705280 Number of successful extensions: 2846 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2632 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2826 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
